Clc06G13200 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc06G13200
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Cytochrome c oxidase, subunit VIb
Location	ClcChr06: 24087375 .. 24091667 (-)
RNA-Seq Expression	Clc06G13200
Synteny	Clc06G13200

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGAGACCAAGCAACCATAGCAGCTCCGTCTCTGCAGGAACTATGGCTGTCAAAGCTGACGCGCCTGGAAGCTTAGATGAAGTTCATAGCGACGTTCTAGCGGAATCAAGACAAGCTTGCTACAAGGTTCTCTCTCTCGATCGCTTATTCTCTACCATTTATGTTAGATCAGAACTTTTTTTAGTGTTAATATGGCAATTTGATGCATTTGAACAAGGCTCGCGATGCTTTTTATGCTTGTGTGGAGAAGGAATCGGACAAAAAGCCGACTGAAATTGCTTCTGTTGGTCTTATTTACCCTGCCGAGTGTAAAGCTTTGAGAGCCAATTTTGTCAAACTTTGCAGAGCTTCTTGGGTAAATGTCGTTTCCCGATCACTGGAGATTACAATAACATGTTCCTTCTTTGAATCTATGGTATATTAGGTTTTGATTCATGGTGTTTATGATTTGCTAGGTGAAGCATTTTGATAGGAAGTTTTGTCAGAACAGTAGGGTTCAAAGACTCCTCGATGACAAAGATTCGAGGAGAGGTCCCTTGATACTCCCGCAGCCATACACTTTTAAGCCCCCTAATTAAGCCAAACACCATCCCCTGGAACAACTTTGGGCGGTCAGAGTCTCATTACTATCATTTTTTTTTTCTTTTTTATTTTGTTGTTTTTACTTCTTCTTCTTCTTTTACTCTGTATAGAGATGACTGTGGCAATAGATTTAGTAATAATGTCAATCTTATTACCAACTTACAAAAGCCTATTCCCTCCCTTTTCATACATATAATTTTGGTTATATAGCGTCAAGATGTTTTTCTTGCTTGCTAAAAATCTTATATAGCGTCGAGATGCTAGGGGGGAGGAAAAAAGTATGGTAGTTCTAACTTCTTGCATGACCGTGATGTATGAACCAAATATTCAAGGCCCTAAAAACTTGTAAATTTGTTGCCTAATTAAAAATTACTCAGTCTCAATATCCCTTGTATGTTAGTGACGGTCTTGGTAGTTGATTCACACCATTTGGATGCTTTGTTAGTTTTTAGAACTCAAGGACACAATTGTATGATATATAGAACAAATCTTGTTCAAGTAAGGTCGTATGCGTTGTTAGTTTTTAGAAATACTACACTACTTGACTTCGTTTGTTTTCCATATTGAATTCTTGACTGCATAACTTCTCCAATGTGGGAAGGTTAGTTGATAATGTATGTGCTTGCTTGGCTCATGATATGAGAATTGCTTCATTTGGCTGTATAGAAATGATTTCTCAATCACAATTTGAATAGGAAGAAATGTTAAGTGCATTCAGAATATTGGCTGATTGCATAAGTTTTAGCCTTTAGGAATATATATTCAAATCAATTACATTAGCTTTTAGGAAAAATATTTTTCCTCTGGTCTCTTTGGCCGTGGAAGTTTAAACACTATGGATTGAATTCAAAGAAGGAATCCGAACTTGGCTCTCCCCAAACATTTGCCTTTGTTAATTGTTGTTACAAGCGTGAAGAATCCAACAATCACCTTTTCCTTGAACGTGTGACCTACATTATCAACAGTTTTAATTTTTTTGGTGCCCTCGGAAGAATGTGGAAGATGATCTTTTTGAATGGTTGTCTGGTTGGTGGCTCAAAGAGAAGGTAGGGTTGGCAACGGGGGTGGGGTTTCCCCGTCTCCGCCCCCGCCCCCGTGGGGGGAATTTACTCCCATCCCCGTCGGAGAAACGGGTCCACGCGGGAACCCATTCCTGAGATAGAGCGAAAGCGAGACAACTAAAGTAGGAAGAGCGAGCGAGACTGAGAGAGAGCGAGACTGTGAGAGATCGTGACTGCGAGTTCAAATGAAGGGCCAAATTACTACAATAAGTAAAGCGAGAGAGAGAGAGAGCGAGAGCGATATATATATATATATATATATATATATATATATATATATATATATATTTACGGGGGTGGTCAGGGATACCCTCCCCATCCCCGCCCCGACCTCGGACGGTACCCGTCTAACCCCTGTCCCTGGTCAAACCCCTGTCCCATATAGATTCTTCTCAGACCTCTACTTTCAATGTTTTCATGAAAATATATAGTTCACTGCCTCTCATTTTTTAGATCCCCCCCCCCCCCCCCCCCCCTTTTTTTATTGTATCCTTCTATTCTAGGCTTTGGATCCCTCTTCCCTACGGCCTTTTGCCTGTGGTTCTATTTTTCTTGTTTAATATAAGGTTTCTCCGTTTCTTATCACAAGAGGGAAAAAAAAAAATCTCAGACTGGGAGTGTGGATCATTCATCCTTATGGACACATTAGCTAGTTTTGCTTGGCATATGATATGTGACTCTACAACCTTTTCAGCCATAAATCAGTCCTGCAGAACCTACTAAAAATTCTCAAATCATTGATCATTTTCTTTGTTAGTGTTTTTTTAAAGCTCGAGACACACTAAAGTGCAGGGGCCATAGCCTTTAAGAGTGCGAGGTGCAAAATAAAAAGTGTGATTTATTTATTTATTTTTTGTGAGGTGCACTATATAGGTTTCAAGGATATATATATATTAAGAAAAATACATAACTATAGTGCTAAACATCCTAGAATTAAATGATTATGATAAAGAAAAAGATATAACAGAAGAAACTTAGCGGTAAGCAAGGCTATACTTGATAGAATATTTGGGGGAGAAGAAAAAGAATGGTAGAGAAATAGTAGGGAAAGCAAGGTCTAAACTAGTAATAGTAAAAAACTATTTTACAAAGAAGCCCTAAGGCGAGCACACTTTCTTTTGTGTGCCTAGCACTCAGGTGGCTGCCTCATGGGCTTTCTAAAATACTAGTTTGTAAATCTGTGAAGGAAGATACGCAAGAGAAAGTAAAGGTTTTTTGTTTTTTTGTTTTTTTGTTTTTCTTTGTTTCTTTTATTTTCTCTAAATAATGTGAATTGATCCTTGGAGGTATTGATAAACAGGACCCGGTTCTGTAGGTATCCCTCATTTACCAAAAGATTTCCCTATCAGGAATTACAACTGAACCACAAGTGATGTAATTGAGATGGACATTGATCCTTCCACACTTGTCAGACTAGAACAAAATCACAAAAAAGATGATAGAACAAAAAAGGTGATAGAATAACTCTAAAACTTAACAACATATAGTTCTTTCATTTTTTTCTCGATGAAAGCGGTTTATTTTCATTAAAAAAAAAAAAAAAAAACAAAACAACATATAGGAAAGATAAAACATAATCAACTAAGGAAGCTCTAACTTCCTAGGTCCTATTAAAAAAATATTCTATTGATATCGTCCTATTGAAAAATATAAACAAACATAAAATGGCTGTTGGTTCTTTTAGATTGGAGTCCTTTTCTGCAGGTAAGGTCGAACTTTTTTTGCTGGGACTTTTTTTTTTTTTTCCCTTTTGTTTTTGTATGCCGTTGTATATCCTTTCATACTTCTCCATGAAAGCTCGGTTTGGTTCTGAACAAAAATACTATTATTATTTTCTTGGAAATATCACTCTAGATGAAACTGATTGTCATACCAAAAAATGGGGCTGTAAGTGGTGGAAGTTTATCTCTTCTTCAGTTACCTTGTGAGGAGAGAGCATCGAACCAGGAGAGTCCTTAGTACTGATTGGATGTCTTGGGACTTGGTAGTAAGACTGCTGATTGAAACAGTGGTAAGGGCCCCCTTTGTTAAGGAGAACCATTTGATTAATGAATCTCTTTTTTTTTTTTTACTTGTGGTAAGTCTGATAAAATGCGTTTAGGATTAGAATTCTATCCTTTGGAAAGGCCTTCAAGGAAATGATGAGATGTACTTTAGATGACATGATATGATTGAGATCATTTAATAGGCTAGTCAAACTCAATGCCCTTGAAAAATTCCATGATTACTGTACTATTGAGACACTTGCGAGATTCATCTGACTAACAATCAATAACCTATTAATCACGAGGAGATCCATCAAGTTGATTAATAAATGTATCCATTATATTGTTGGACATTCTCAATATACAAGGATTGATCTTTCACATTGCTGCTTCTTTGTCCGTTTGTGGCTAAGGTTTGGTCATTCAATCTTTCTTCCCAAAAAGATTGAAGACTGTTGTTGGAAGCTTTGTTAGGGACAAGTTTTTGGGGCCAGGCAAATATATTGTGGTGCGTGCTGTGTTGTGAAAGCGATGATTTGGACAACTTGGAAAGAGTCCCCTTGGAATCTTTGAGAATAGTTCAAGTTTGGAAGATTCTTTTATTTATAATATACAAGACATGACATCTTGGTGGTGTTCTCATCGCAAAGAATTTTGGTGTACCT

mRNA sequence

AAGAGACCAAGCAACCATAGCAGCTCCGTCTCTGCAGGAACTATGGCTGTCAAAGCTGACGCGCCTGGAAGCTTAGATGAAGTTCATAGCGACGTTCTAGCGGAATCAAGACAAGCTTGCTACAAGGCTCGCGATGCTTTTTATGCTTGTGTGGAGAAGGAATCGGACAAAAAGCCGACTGAAATTGCTTCTGTTGGTCTTATTTACCCTGCCGAGTGTAAAGCTTTGAGAGCCAATTTTGTCAAACTTTGCAGAGCTTCTTGGGTGAAGCATTTTGATAGGAAGTTTTGTCAGAACAGTAGGGTTCAAAGACTCCTCGATGACAAAGATTCGAGGAGAGGTCCCTTGATACTCCCGCAGCCATACACTTTTAAGCCCCCTAATTAAGCCAAACACCATCCCCTGGAACAACTTTGGGCGTTACCTTGTGAGGAGAGAGCATCGAACCAGGAGAGTCCTTAGTACTGATTGGATGTCTTGGGACTTGGTAGTAAGACTGCTGATTGAAACAGTGGTTTGGTCATTCAATCTTTCTTCCCAAAAAGATTGAAGACTGTTGTTGGAAGCTTTGTTAGGGACAAGTTTTTGGGGCCAGGCAAATATATTGTGGTGCGTGCTGTGTTGTGAAAGCGATGATTTGGACAACTTGGAAAGAGTCCCCTTGGAATCTTTGAGAATAGTTCAAGTTTGGAAGATTCTTTTATTTATAATATACAAGACATGACATCTTGGTGGTGTTCTCATCGCAAAGAATTTTGGTGTACCT

Coding sequence (CDS)

ATGGCTGTCAAAGCTGACGCGCCTGGAAGCTTAGATGAAGTTCATAGCGACGTTCTAGCGGAATCAAGACAAGCTTGCTACAAGGCTCGCGATGCTTTTTATGCTTGTGTGGAGAAGGAATCGGACAAAAAGCCGACTGAAATTGCTTCTGTTGGTCTTATTTACCCTGCCGAGTGTAAAGCTTTGAGAGCCAATTTTGTCAAACTTTGCAGAGCTTCTTGGGTGAAGCATTTTGATAGGAAGTTTTGTCAGAACAGTAGGGTTCAAAGACTCCTCGATGACAAAGATTCGAGGAGAGGTCCCTTGATACTCCCGCAGCCATACACTTTTAAGCCCCCTAATTAA

Protein sequence

MAVKADAPGSLDEVHSDVLAESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECKALRANFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLILPQPYTFKPPN

Homology

[Close]

BLAST of Clc06G13200 vs. NCBI nr
Match: XP_038878579.1 (uncharacterized protein LOC120070767 [Benincasa hispida])

HSP 1 Score: 224.9 bits (572), Expect = 3.4e-55
Identity = 109/114 (95.61%), Postives = 110/114 (96.49%), Query Frame = 0


Query: 1   MAVKADAPGSLDEVHSDVLAESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60
           MAV+ADA G LDEVHSDVLAESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK
Sbjct: 1   MAVEADASGGLDEVHSDVLAESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60

Query: 61  ALRANFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLILPQPYTFKPPN 115
           ALRA FVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLILPQPYTFKP N
Sbjct: 61  ALRAYFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLILPQPYTFKPTN 114

[Close]

BLAST of Clc06G13200 vs. NCBI nr
Match: XP_022134674.1 (uncharacterized protein LOC111006886 [Momordica charantia] >XP_022134675.1 uncharacterized protein LOC111006886 [Momordica charantia])

HSP 1 Score: 219.2 bits (557), Expect = 1.9e-53
Identity = 106/112 (94.64%), Postives = 107/112 (95.54%), Query Frame = 0


Query: 1   MAVKADAPGSLDEVHSDVLAESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60
           MAV+ADA G LDEVHSDVLA SRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK
Sbjct: 1   MAVEADASGGLDEVHSDVLAGSRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60

Query: 61  ALRANFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLILPQPYTFKP 113
           ALRA FVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPL LPQPYTFKP
Sbjct: 61  ALRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLSLPQPYTFKP 112

[Close]

BLAST of Clc06G13200 vs. NCBI nr
Match: XP_008443871.1 (PREDICTED: uncharacterized protein LOC103487365 isoform X1 [Cucumis melo] >XP_008443872.1 PREDICTED: uncharacterized protein LOC103487365 isoform X1 [Cucumis melo] >KAA0035060.1 cytochrome c oxidase assembly factor 6 isoform X3 [Cucumis melo var. makuwa] >TYK03618.1 cytochrome c oxidase assembly factor 6 isoform X3 [Cucumis melo var. makuwa])

HSP 1 Score: 216.9 bits (551), Expect = 9.3e-53
Identity = 103/114 (90.35%), Postives = 109/114 (95.61%), Query Frame = 0


Query: 1   MAVKADAPGSLDEVHSDVLAESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60
           MAV+AD+ G  DEVH+DVL+ESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK
Sbjct: 1   MAVEADSSGGSDEVHTDVLSESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60

Query: 61  ALRANFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLILPQPYTFKPPN 115
           ALRA++VKLCRASWVKHFDRKFCQNSRVQRLLDDKD RRGPLILPQPYTFKP N
Sbjct: 61  ALRADYVKLCRASWVKHFDRKFCQNSRVQRLLDDKDLRRGPLILPQPYTFKPTN 114

[Close]

BLAST of Clc06G13200 vs. NCBI nr
Match: XP_011655945.1 (uncharacterized protein LOC101212489 isoform X1 [Cucumis sativus])

HSP 1 Score: 212.2 bits (539), Expect = 2.3e-51
Identity = 100/114 (87.72%), Postives = 107/114 (93.86%), Query Frame = 0


Query: 1   MAVKADAPGSLDEVHSDVLAESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60
           MA +AD+ G  DEVH+DVL+ESRQACYKARDAFYAC+EKESDKKPTEIASVGLIYPAECK
Sbjct: 1   MAFEADSSGGSDEVHTDVLSESRQACYKARDAFYACMEKESDKKPTEIASVGLIYPAECK 60

Query: 61  ALRANFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLILPQPYTFKPPN 115
           ALRA++ KLCRASWVKHFDRKFCQNSRVQRLLDDKD RRGPLILPQPYTFKP N
Sbjct: 61  ALRADYAKLCRASWVKHFDRKFCQNSRVQRLLDDKDLRRGPLILPQPYTFKPTN 114

[Close]

BLAST of Clc06G13200 vs. NCBI nr
Match: XP_022973432.1 (cytochrome c oxidase assembly factor 6 [Cucurbita maxima])

HSP 1 Score: 208.8 bits (530), Expect = 2.5e-50
Identity = 98/112 (87.50%), Postives = 104/112 (92.86%), Query Frame = 0


Query: 1   MAVKADAPGSLDEVHSDVLAESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60
           MA++ D  G  +EVH+DVLAE RQACYKARDAFYACVEKESDKKPTEIASVGL+YPAECK
Sbjct: 1   MALETDPSGGSEEVHTDVLAEFRQACYKARDAFYACVEKESDKKPTEIASVGLLYPAECK 60

Query: 61  ALRANFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLILPQPYTFKP 113
           A RA FVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPL+LPQPYTFKP
Sbjct: 61  ASRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLVLPQPYTFKP 112

[Close]

BLAST of Clc06G13200 vs. ExPASy TrEMBL
Match: A0A6J1BZF0 (uncharacterized protein LOC111006886 OS=Momordica charantia OX=3673 GN=LOC111006886 PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 9.1e-54
Identity = 106/112 (94.64%), Postives = 107/112 (95.54%), Query Frame = 0


Query: 1   MAVKADAPGSLDEVHSDVLAESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60
           MAV+ADA G LDEVHSDVLA SRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK
Sbjct: 1   MAVEADASGGLDEVHSDVLAGSRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60

Query: 61  ALRANFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLILPQPYTFKP 113
           ALRA FVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPL LPQPYTFKP
Sbjct: 61  ALRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLSLPQPYTFKP 112

[Close]

BLAST of Clc06G13200 vs. ExPASy TrEMBL
Match: A0A1S3B9T5 (uncharacterized protein LOC103487365 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487365 PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 4.5e-53
Identity = 103/114 (90.35%), Postives = 109/114 (95.61%), Query Frame = 0


Query: 1   MAVKADAPGSLDEVHSDVLAESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60
           MAV+AD+ G  DEVH+DVL+ESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK
Sbjct: 1   MAVEADSSGGSDEVHTDVLSESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60

Query: 61  ALRANFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLILPQPYTFKPPN 115
           ALRA++VKLCRASWVKHFDRKFCQNSRVQRLLDDKD RRGPLILPQPYTFKP N
Sbjct: 61  ALRADYVKLCRASWVKHFDRKFCQNSRVQRLLDDKDLRRGPLILPQPYTFKPTN 114

[Close]

BLAST of Clc06G13200 vs. ExPASy TrEMBL
Match: A0A5A7SVN2 (Cytochrome c oxidase assembly factor 6 isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1369G00450 PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 4.5e-53
Identity = 103/114 (90.35%), Postives = 109/114 (95.61%), Query Frame = 0


Query: 1   MAVKADAPGSLDEVHSDVLAESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60
           MAV+AD+ G  DEVH+DVL+ESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK
Sbjct: 1   MAVEADSSGGSDEVHTDVLSESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60

Query: 61  ALRANFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLILPQPYTFKPPN 115
           ALRA++VKLCRASWVKHFDRKFCQNSRVQRLLDDKD RRGPLILPQPYTFKP N
Sbjct: 61  ALRADYVKLCRASWVKHFDRKFCQNSRVQRLLDDKDLRRGPLILPQPYTFKPTN 114

[Close]

BLAST of Clc06G13200 vs. ExPASy TrEMBL
Match: A0A0A0LTX1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G269850 PE=4 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 1.1e-51
Identity = 100/114 (87.72%), Postives = 107/114 (93.86%), Query Frame = 0


Query: 1   MAVKADAPGSLDEVHSDVLAESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60
           MA +AD+ G  DEVH+DVL+ESRQACYKARDAFYAC+EKESDKKPTEIASVGLIYPAECK
Sbjct: 1   MAFEADSSGGSDEVHTDVLSESRQACYKARDAFYACMEKESDKKPTEIASVGLIYPAECK 60

Query: 61  ALRANFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLILPQPYTFKPPN 115
           ALRA++ KLCRASWVKHFDRKFCQNSRVQRLLDDKD RRGPLILPQPYTFKP N
Sbjct: 61  ALRADYAKLCRASWVKHFDRKFCQNSRVQRLLDDKDLRRGPLILPQPYTFKPTN 114

[Close]

BLAST of Clc06G13200 vs. ExPASy TrEMBL
Match: A0A6J1I7I2 (cytochrome c oxidase assembly factor 6 OS=Cucurbita maxima OX=3661 GN=LOC111471973 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 1.2e-50
Identity = 98/112 (87.50%), Postives = 104/112 (92.86%), Query Frame = 0


Query: 1   MAVKADAPGSLDEVHSDVLAESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60
           MA++ D  G  +EVH+DVLAE RQACYKARDAFYACVEKESDKKPTEIASVGL+YPAECK
Sbjct: 1   MALETDPSGGSEEVHTDVLAEFRQACYKARDAFYACVEKESDKKPTEIASVGLLYPAECK 60

Query: 61  ALRANFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLILPQPYTFKP 113
           A RA FVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPL+LPQPYTFKP
Sbjct: 61  ASRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLVLPQPYTFKP 112

[Close]

BLAST of Clc06G13200 vs. TAIR 10
Match: AT5G58005.1 (Cytochrome c oxidase, subunit Vib family protein )

HSP 1 Score: 165.6 bits (418), Expect = 2.3e-41
Identity = 75/112 (66.96%), Postives = 90/112 (80.36%), Query Frame = 0


Query: 1   MAVKADAPGSLDEVHSDVLAESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60
           MA+   A  + ++VH DVL ++R ACYKARDAFYAC+EKES KKPTEIA+VGL+YP EC 
Sbjct: 1   MALDTYASSNPNDVHEDVLLKARDACYKARDAFYACLEKESGKKPTEIATVGLLYPKECS 60

Query: 61  ALRANFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLILPQPYTFKP 113
             R  FV  CR+SWVKHFDR++C+N RVQRLLDD D R+GP+ LPQPYTFKP
Sbjct: 61  NSRTQFVNNCRSSWVKHFDREYCRNKRVQRLLDDGDERKGPMSLPQPYTFKP 112

[Close]

BLAST of Clc06G13200 vs. TAIR 10
Match: AT5G58005.2 (Cytochrome c oxidase, subunit Vib family protein )

HSP 1 Score: 165.6 bits (418), Expect = 2.3e-41
Identity = 75/112 (66.96%), Postives = 90/112 (80.36%), Query Frame = 0


Query: 1   MAVKADAPGSLDEVHSDVLAESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60
           MA+   A  + ++VH DVL ++R ACYKARDAFYAC+EKES KKPTEIA+VGL+YP EC 
Sbjct: 1   MALDTYASSNPNDVHEDVLLKARDACYKARDAFYACLEKESGKKPTEIATVGLLYPKECS 60

Query: 61  ALRANFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLILPQPYTFKP 113
             R  FV  CR+SWVKHFDR++C+N RVQRLLDD D R+GP+ LPQPYTFKP
Sbjct: 61  NSRTQFVNNCRSSWVKHFDREYCRNKRVQRLLDDGDERKGPMSLPQPYTFKP 112

The following BLAST results are available for this feature:

BLAST of Clc06G13200 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038878579.1	3.4e-55	95.61	uncharacterized protein LOC120070767 [Benincasa hispida]	[more]
XP_022134674.1	1.9e-53	94.64	uncharacterized protein LOC111006886 [Momordica charantia] >XP_022134675.1 uncha...	[more]
XP_008443871.1	9.3e-53	90.35	PREDICTED: uncharacterized protein LOC103487365 isoform X1 [Cucumis melo] >XP_00...	[more]
XP_011655945.1	2.3e-51	87.72	uncharacterized protein LOC101212489 isoform X1 [Cucumis sativus]	[more]
XP_022973432.1	2.5e-50	87.50	cytochrome c oxidase assembly factor 6 [Cucurbita maxima]	[more]

BLAST of Clc06G13200 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc06G13200 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BZF0	9.1e-54	94.64	uncharacterized protein LOC111006886 OS=Momordica charantia OX=3673 GN=LOC111006...	[more]
A0A1S3B9T5	4.5e-53	90.35	uncharacterized protein LOC103487365 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A5A7SVN2	4.5e-53	90.35	Cytochrome c oxidase assembly factor 6 isoform X3 OS=Cucumis melo var. makuwa OX...	[more]
A0A0A0LTX1	1.1e-51	87.72	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G269850 PE=4 SV=1	[more]
A0A6J1I7I2	1.2e-50	87.50	cytochrome c oxidase assembly factor 6 OS=Cucurbita maxima OX=3661 GN=LOC1114719...	[more]

BLAST of Clc06G13200 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G58005.1	2.3e-41	66.96	Cytochrome c oxidase, subunit Vib family protein	[more]
AT5G58005.2	2.3e-41	66.96	Cytochrome c oxidase, subunit Vib family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003213	Cytochrome c oxidase, subunit VIb	PFAM	PF02297	COX6B	coord: 21..92 e-value: 6.8E-19 score: 67.9
IPR036549	Cytochrome c oxidase, subunit VIb superfamily	GENE3D	1.10.10.140	Cytochrome c oxidase, subunit VIb	coord: 17..91 e-value: 3.1E-9 score: 38.6
IPR036549	Cytochrome c oxidase, subunit VIb superfamily	SUPERFAMILY	47694	Cytochrome c oxidase subunit h	coord: 22..82
None	No IPR available	PANTHER	PTHR47445	OS08G0441400 PROTEIN	coord: 1..112
None	No IPR available	PANTHER	PTHR47445:SF1	OS08G0441400 PROTEIN	coord: 1..112

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc06G13200.1	Clc06G13200.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0045277	respiratory chain complex IV