Clc06G12730 (gene) Watermelon (cordophanus) v2

Overview
NameClc06G12730
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
LocationClcChr06: 23644273 .. 23645231 (+)
RNA-Seq ExpressionClc06G12730
SyntenyClc06G12730
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTAAGTCATATGTGCAAGCTTTGGGCGACATCTCCTTTGTCTACGTTCGTTGATGGAATAATGTCTTGGCTCACTCTTTGGCGTCCAAGTCGTTGGAGGATCAAATTTTTGTCCATCTTTTTCTCTTTACTCGGTATGATTTGAGGCTCTTGTTTCTTTTAATGTAGCTCTTAGACTGGTTTGTTGTTGGTTTCCTAGAGGGGGATATAATTTGCTAATTATAAATATATATAAATATATATTGAGGTGAGCAAAGTATATATAGATTATTATCATCATTGTGATTATGAATGTTTTTCATTAAAATTCAGGAAAGAAAAGAAAACTTCATACGTAACTTGTACACTATTATGATTCTATACTTACTCCAAATAAAATCCAAATTTTAGTAACTCCAAAGTCAAAAGTTAACATAAAAAATTGTAGTTTTTATAGCTACCAAACGTTTCCGATTTCCCTATATATCTAAACTACTTGGTCCTAGTTTTCTCCCACAAACCATTTAAAGTTATTCCTTTGAGTATTATAAGAACCTTATTCAATCTTTATCTTTCTTAACCTTCATACTCAATTTAGCACCAACAATGGCAGCATCACCCACCAAGTTACCACTTGTACTCCTACTCTGCATTGTCATTTTAGCATCATTAGTAACGGCTCATCCAGGAACTGTGGCAGCACCGGCGCCTAATCCGTTGGTAACAAAGGATTGCATATCATTTGTTCCTATGGCGACAAAATGTGTGATTGATGTGCTCAAGAATGTAGTTGCTCCTCATCCTTCTTGTTGCGAAGCTATTTCTAAACTCTATGAGTGTTCCTCCGAGTTTCTCAAAGACATTCCCTCTGGCGATATGATTTTGGTTAAGAGTGTTTGTGCTCTGTGGGGAGTTTCTATTTTTTAAACTAAACGTTGTTTGACTTAATTTGATGAAGATGAATAAGAAAGTTATCCATG

mRNA sequence

GTTAAGTCATATGTGCAAGCTTTGGGCGACATCTCCTTTGTCTACGTTCGTTGATGGAATAATGTCTTGGCTCACTCTTTGGCGTCCAAGTCGTTGGAGGATCAAATTTTTGTCCATCTTTTTCTCTTTACTCGCACCAACAATGGCAGCATCACCCACCAAGTTACCACTTGTACTCCTACTCTGCATTGTCATTTTAGCATCATTAGTAACGGCTCATCCAGGAACTGTGGCAGCACCGGCGCCTAATCCGTTGGTAACAAAGGATTGCATATCATTTGTTCCTATGGCGACAAAATGTGTGATTGATGTGCTCAAGAATGTAGTTGCTCCTCATCCTTCTTGTTGCGAAGCTATTTCTAAACTCTATGAGTGTTCCTCCGAGTTTCTCAAAGACATTCCCTCTGGCGATATGATTTTGGTTAAGAGTGTTTGTGCTCTGTGGGGAGTTTCTATTTTTTAAACTAAACGTTGTTTGACTTAATTTGATGAAGATGAATAAGAAAGTTATCCATG

Coding sequence (CDS)

ATGTGCAAGCTTTGGGCGACATCTCCTTTGTCTACGTTCGTTGATGGAATAATGTCTTGGCTCACTCTTTGGCGTCCAAGTCGTTGGAGGATCAAATTTTTGTCCATCTTTTTCTCTTTACTCGCACCAACAATGGCAGCATCACCCACCAAGTTACCACTTGTACTCCTACTCTGCATTGTCATTTTAGCATCATTAGTAACGGCTCATCCAGGAACTGTGGCAGCACCGGCGCCTAATCCGTTGGTAACAAAGGATTGCATATCATTTGTTCCTATGGCGACAAAATGTGTGATTGATGTGCTCAAGAATGTAGTTGCTCCTCATCCTTCTTGTTGCGAAGCTATTTCTAAACTCTATGAGTGTTCCTCCGAGTTTCTCAAAGACATTCCCTCTGGCGATATGATTTTGGTTAAGAGTGTTTGTGCTCTGTGGGGAGTTTCTATTTTTTAA

Protein sequence

MCKLWATSPLSTFVDGIMSWLTLWRPSRWRIKFLSIFFSLLAPTMAASPTKLPLVLLLCIVILASLVTAHPGTVAAPAPNPLVTKDCISFVPMATKCVIDVLKNVVAPHPSCCEAISKLYECSSEFLKDIPSGDMILVKSVCALWGVSIF
Homology
[Close]
BLAST of Clc06G12730 vs. NCBI nr
Match: KAA0050065.1 (hypothetical protein E6C27_scaffold675G00460 [Cucumis melo var. makuwa])

HSP 1 Score: 144.8 bits (364), Expect = 5.9e-31
Identity = 78/106 (73.58%), Postives = 87/106 (82.08%), Query Frame = 0 

Query: 45  MAASPTKLPLVLLLCIVILASLVTAHPGTVAAPAPNPLVTK-DCISFVPMATKCVIDVLK 104
           MAAS TKLPL LL CI ILAS V A P TVAA AP   ++   C SFVP AT+CVIDVLK
Sbjct: 1   MAASFTKLPLALLFCIFILASSVMARPVTVAAAAPEGDISLFPCKSFVPKATECVIDVLK 60

Query: 105 NVVAPHPSCCEAISKLYECSSEFLKDIPSGDMILVKSVCALWGVSI 150
           N VAPHPSCC+AIS+L++CSS+FLKDIPS DMILVKS+CALWGVSI
Sbjct: 61  NAVAPHPSCCQAISELHDCSSQFLKDIPSVDMILVKSICALWGVSI 106

[Close]
BLAST of Clc06G12730 vs. NCBI nr
Match: TYK10343.1 (hypothetical protein E5676_scaffold367G00180 [Cucumis melo var. makuwa])

HSP 1 Score: 144.4 bits (363), Expect = 7.7e-31
Identity = 78/106 (73.58%), Postives = 86/106 (81.13%), Query Frame = 0 

Query: 45  MAASPTKLPLVLLLCIVILASLVTAHPGTVAAPAP-NPLVTKDCISFVPMATKCVIDVLK 104
           MAAS TKLPL LL CI ILAS V A P TVAA AP   +    C SFVP AT+CVIDVLK
Sbjct: 1   MAASFTKLPLALLFCIFILASSVMARPVTVAAAAPIGDISLFPCKSFVPKATECVIDVLK 60

Query: 105 NVVAPHPSCCEAISKLYECSSEFLKDIPSGDMILVKSVCALWGVSI 150
           N VAPHPSCC+AIS+L++CSS+FLKDIPS DMILVKS+CALWGVSI
Sbjct: 61  NAVAPHPSCCQAISELHDCSSQFLKDIPSVDMILVKSICALWGVSI 106

[Close]
BLAST of Clc06G12730 vs. NCBI nr
Match: TYK10345.1 (hypothetical protein E5676_scaffold367G00210 [Cucumis melo var. makuwa])

HSP 1 Score: 143.7 bits (361), Expect = 1.3e-30
Identity = 76/102 (74.51%), Postives = 82/102 (80.39%), Query Frame = 0 

Query: 50  TKLPLVLLLCIVILASLVTAHPGTVAA--PAPNPLVTKDCISFVPMATKCVIDVLKNVVA 109
           TKLPLVLL+CI ILAS VTA P  VAA  P         CISFVP ATKCVIDVLKN VA
Sbjct: 7   TKLPLVLLVCIAILASSVTARPTIVAAATPTSEDFSLFPCISFVPKATKCVIDVLKNAVA 66

Query: 110 PHPSCCEAISKLYECSSEFLKDIPSGDMILVKSVCALWGVSI 150
           PHPSCCEAIS+L++CSS+FLKDIPS DMILVKS+CA WGVSI
Sbjct: 67  PHPSCCEAISQLHDCSSQFLKDIPSSDMILVKSICASWGVSI 108

[Close]
BLAST of Clc06G12730 vs. NCBI nr
Match: KAA0050063.1 (hypothetical protein E6C27_scaffold675G00440 [Cucumis melo var. makuwa])

HSP 1 Score: 142.9 bits (359), Expect = 2.2e-30
Identity = 77/105 (73.33%), Postives = 86/105 (81.90%), Query Frame = 0 

Query: 50  TKLPLVLLLCIVILASLVTAHPGTVAAPAPNPLVTKD-----CISFVPMATKCVIDVLKN 109
           TKLPL+LL+CI ILAS VTA P  VAA  P   ++KD     CISFVPMATK VIDVLKN
Sbjct: 7   TKLPLILLVCIAILASSVTARPTIVAAATP---ISKDFSLFPCISFVPMATKRVIDVLKN 66

Query: 110 VVAPHPSCCEAISKLYECSSEFLKDIPSGDMILVKSVCALWGVSI 150
            VAPHPSCCEAIS+L++CSS+FLKDIPS DMILVKS+CA WGVSI
Sbjct: 67  AVAPHPSCCEAISQLHDCSSQFLKDIPSDDMILVKSICASWGVSI 108

[Close]
BLAST of Clc06G12730 vs. NCBI nr
Match: KAA0050079.1 (hypothetical protein E6C27_scaffold675G00630 [Cucumis melo var. makuwa])

HSP 1 Score: 142.9 bits (359), Expect = 2.2e-30
Identity = 76/102 (74.51%), Postives = 83/102 (81.37%), Query Frame = 0 

Query: 50  TKLPLVLLLCIVILASLVTAHPGTVAA--PAPNPLVTKDCISFVPMATKCVIDVLKNVVA 109
           TKLPLVL +CI ILAS VTA P  VAA  P         CISFVP ATKCVIDVLKNVVA
Sbjct: 7   TKLPLVLRVCIAILASSVTACPTIVAAATPTSEDFSLFPCISFVPKATKCVIDVLKNVVA 66

Query: 110 PHPSCCEAISKLYECSSEFLKDIPSGDMILVKSVCALWGVSI 150
           PHPSCCEAI++L++CSS+FLKDIPSGDMILVKS+CA WGVSI
Sbjct: 67  PHPSCCEAITQLHDCSSQFLKDIPSGDMILVKSICASWGVSI 108

[Close]
BLAST of Clc06G12730 vs. ExPASy TrEMBL
Match: A0A5A7U8Y3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00460 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 2.9e-31
Identity = 78/106 (73.58%), Postives = 87/106 (82.08%), Query Frame = 0 

Query: 45  MAASPTKLPLVLLLCIVILASLVTAHPGTVAAPAPNPLVTK-DCISFVPMATKCVIDVLK 104
           MAAS TKLPL LL CI ILAS V A P TVAA AP   ++   C SFVP AT+CVIDVLK
Sbjct: 1   MAASFTKLPLALLFCIFILASSVMARPVTVAAAAPEGDISLFPCKSFVPKATECVIDVLK 60

Query: 105 NVVAPHPSCCEAISKLYECSSEFLKDIPSGDMILVKSVCALWGVSI 150
           N VAPHPSCC+AIS+L++CSS+FLKDIPS DMILVKS+CALWGVSI
Sbjct: 61  NAVAPHPSCCQAISELHDCSSQFLKDIPSVDMILVKSICALWGVSI 106

[Close]
BLAST of Clc06G12730 vs. ExPASy TrEMBL
Match: A0A5D3CEQ4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00180 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 3.7e-31
Identity = 78/106 (73.58%), Postives = 86/106 (81.13%), Query Frame = 0 

Query: 45  MAASPTKLPLVLLLCIVILASLVTAHPGTVAAPAP-NPLVTKDCISFVPMATKCVIDVLK 104
           MAAS TKLPL LL CI ILAS V A P TVAA AP   +    C SFVP AT+CVIDVLK
Sbjct: 1   MAASFTKLPLALLFCIFILASSVMARPVTVAAAAPIGDISLFPCKSFVPKATECVIDVLK 60

Query: 105 NVVAPHPSCCEAISKLYECSSEFLKDIPSGDMILVKSVCALWGVSI 150
           N VAPHPSCC+AIS+L++CSS+FLKDIPS DMILVKS+CALWGVSI
Sbjct: 61  NAVAPHPSCCQAISELHDCSSQFLKDIPSVDMILVKSICALWGVSI 106

[Close]
BLAST of Clc06G12730 vs. ExPASy TrEMBL
Match: A0A5D3CFS6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00210 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 6.4e-31
Identity = 76/102 (74.51%), Postives = 82/102 (80.39%), Query Frame = 0 

Query: 50  TKLPLVLLLCIVILASLVTAHPGTVAA--PAPNPLVTKDCISFVPMATKCVIDVLKNVVA 109
           TKLPLVLL+CI ILAS VTA P  VAA  P         CISFVP ATKCVIDVLKN VA
Sbjct: 7   TKLPLVLLVCIAILASSVTARPTIVAAATPTSEDFSLFPCISFVPKATKCVIDVLKNAVA 66

Query: 110 PHPSCCEAISKLYECSSEFLKDIPSGDMILVKSVCALWGVSI 150
           PHPSCCEAIS+L++CSS+FLKDIPS DMILVKS+CA WGVSI
Sbjct: 67  PHPSCCEAISQLHDCSSQFLKDIPSSDMILVKSICASWGVSI 108

[Close]
BLAST of Clc06G12730 vs. ExPASy TrEMBL
Match: A0A5A7U2D8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00440 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 1.1e-30
Identity = 77/105 (73.33%), Postives = 86/105 (81.90%), Query Frame = 0 

Query: 50  TKLPLVLLLCIVILASLVTAHPGTVAAPAPNPLVTKD-----CISFVPMATKCVIDVLKN 109
           TKLPL+LL+CI ILAS VTA P  VAA  P   ++KD     CISFVPMATK VIDVLKN
Sbjct: 7   TKLPLILLVCIAILASSVTARPTIVAAATP---ISKDFSLFPCISFVPMATKRVIDVLKN 66

Query: 110 VVAPHPSCCEAISKLYECSSEFLKDIPSGDMILVKSVCALWGVSI 150
            VAPHPSCCEAIS+L++CSS+FLKDIPS DMILVKS+CA WGVSI
Sbjct: 67  AVAPHPSCCEAISQLHDCSSQFLKDIPSDDMILVKSICASWGVSI 108

[Close]
BLAST of Clc06G12730 vs. ExPASy TrEMBL
Match: A0A5A7U9B0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00630 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 1.1e-30
Identity = 76/102 (74.51%), Postives = 83/102 (81.37%), Query Frame = 0 

Query: 50  TKLPLVLLLCIVILASLVTAHPGTVAA--PAPNPLVTKDCISFVPMATKCVIDVLKNVVA 109
           TKLPLVL +CI ILAS VTA P  VAA  P         CISFVP ATKCVIDVLKNVVA
Sbjct: 7   TKLPLVLRVCIAILASSVTACPTIVAAATPTSEDFSLFPCISFVPKATKCVIDVLKNVVA 66

Query: 110 PHPSCCEAISKLYECSSEFLKDIPSGDMILVKSVCALWGVSI 150
           PHPSCCEAI++L++CSS+FLKDIPSGDMILVKS+CA WGVSI
Sbjct: 67  PHPSCCEAITQLHDCSSQFLKDIPSGDMILVKSICASWGVSI 108

The following BLAST results are available for this feature:
BLAST of Clc06G12730 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0050065.15.9e-3173.58hypothetical protein E6C27_scaffold675G00460 [Cucumis melo var. makuwa][more]
TYK10343.17.7e-3173.58hypothetical protein E5676_scaffold367G00180 [Cucumis melo var. makuwa][more]
TYK10345.11.3e-3074.51hypothetical protein E5676_scaffold367G00210 [Cucumis melo var. makuwa][more]
KAA0050063.12.2e-3073.33hypothetical protein E6C27_scaffold675G00440 [Cucumis melo var. makuwa][more]
KAA0050079.12.2e-3074.51hypothetical protein E6C27_scaffold675G00630 [Cucumis melo var. makuwa][more]
BLAST of Clc06G12730 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Clc06G12730 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7U8Y32.9e-3173.58Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3CEQ43.7e-3173.58Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3CFS66.4e-3174.51Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7U2D81.1e-3073.33Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7U9B01.1e-3074.51Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of Clc06G12730 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc06G12730.1Clc06G12730.1mRNA