Clc06G12710 (gene) Watermelon (cordophanus) v2

Overview
NameClc06G12710
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
LocationClcChr06: 23631432 .. 23631779 (-)
RNA-Seq ExpressionClc06G12710
SyntenyClc06G12710
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GTACCAACAATGGCATCATCACCCACCAAGTTACCACTTGTACTACTAGTTTGCTTTGCCATTTTAGCACTATCATCGGTAACGGCTCGTTCAGAAACAGTGCCAACAGCAGCTCCTGATTCGTTCGTAACTGAGGATTTCTCTTTATTCCCTTTCATATCATTTGTTCCCGAGGCGACGAAGTGTGTGATTGATGTGCTTAAACAGGCGGTTGCTCCTCATCCTTCTTGTTGCAAAGCCATTTCTAAACTCTATGATTGTTCATCCGAGTTTCTCAAAGACATTCCCTCCACCGATATGATTTTGATTAAGGGTGTTTGTGCTATGTGGGGAGTTTCTATTTCTTAG

mRNA sequence

GTACCAACAATGGCATCATCACCCACCAAGTTACCACTTGTACTACTAGTTTGCTTTGCCATTTTAGCACTATCATCGGTAACGGCTCGTTCAGAAACAGTGCCAACAGCAGCTCCTGATTCGTTCGTAACTGAGGATTTCTCTTTATTCCCTTTCATATCATTTGTTCCCGAGGCGACGAAGTGTGTGATTGATGTGCTTAAACAGGCGGTTGCTCCTCATCCTTCTTGTTGCAAAGCCATTTCTAAACTCTATGATTGTTCATCCGAGTTTCTCAAAGACATTCCCTCCACCGATATGATTTTGATTAAGGGTGTTTGTGCTATGTGGGGAGTTTCTATTTCTTAG

Coding sequence (CDS)

ATGGCATCATCACCCACCAAGTTACCACTTGTACTACTAGTTTGCTTTGCCATTTTAGCACTATCATCGGTAACGGCTCGTTCAGAAACAGTGCCAACAGCAGCTCCTGATTCGTTCGTAACTGAGGATTTCTCTTTATTCCCTTTCATATCATTTGTTCCCGAGGCGACGAAGTGTGTGATTGATGTGCTTAAACAGGCGGTTGCTCCTCATCCTTCTTGTTGCAAAGCCATTTCTAAACTCTATGATTGTTCATCCGAGTTTCTCAAAGACATTCCCTCCACCGATATGATTTTGATTAAGGGTGTTTGTGCTATGTGGGGAGTTTCTATTTCTTAG

Protein sequence

MASSPTKLPLVLLVCFAILALSSVTARSETVPTAAPDSFVTEDFSLFPFISFVPEATKCVIDVLKQAVAPHPSCCKAISKLYDCSSEFLKDIPSTDMILIKGVCAMWGVSIS
Homology
[Close]
BLAST of Clc06G12710 vs. NCBI nr
Match: TYK10345.1 (hypothetical protein E5676_scaffold367G00210 [Cucumis melo var. makuwa])

HSP 1 Score: 157.5 bits (397), Expect = 6.6e-35
Identity = 84/110 (76.36%), Postives = 93/110 (84.55%), Query Frame = 0 

Query: 3   SSPTKLPLVLLVCFAILALSSVTARSETVPTAAPDSFVTEDFSLFPFISFVPEATKCVID 62
           S+ TKLPLVLLVC AILA SSVTAR   V  A P S   EDFSLFP ISFVP+ATKCVID
Sbjct: 4   SAITKLPLVLLVCIAILA-SSVTARPTIVAAATPTS---EDFSLFPCISFVPKATKCVID 63

Query: 63  VLKQAVAPHPSCCKAISKLYDCSSEFLKDIPSTDMILIKGVCAMWGVSIS 113
           VLK AVAPHPSCC+AIS+L+DCSS+FLKDIPS+DMIL+K +CA WGVSIS
Sbjct: 64  VLKNAVAPHPSCCEAISQLHDCSSQFLKDIPSSDMILVKSICASWGVSIS 109

[Close]
BLAST of Clc06G12710 vs. NCBI nr
Match: KAA0050063.1 (hypothetical protein E6C27_scaffold675G00440 [Cucumis melo var. makuwa])

HSP 1 Score: 149.1 bits (375), Expect = 2.3e-32
Identity = 80/110 (72.73%), Postives = 91/110 (82.73%), Query Frame = 0 

Query: 3   SSPTKLPLVLLVCFAILALSSVTARSETVPTAAPDSFVTEDFSLFPFISFVPEATKCVID 62
           S+ TKLPL+LLVC AILA SSVTAR   V  A P   +++DFSLFP ISFVP ATK VID
Sbjct: 4   SAITKLPLILLVCIAILA-SSVTARPTIVAAATP---ISKDFSLFPCISFVPMATKRVID 63

Query: 63  VLKQAVAPHPSCCKAISKLYDCSSEFLKDIPSTDMILIKGVCAMWGVSIS 113
           VLK AVAPHPSCC+AIS+L+DCSS+FLKDIPS DMIL+K +CA WGVSIS
Sbjct: 64  VLKNAVAPHPSCCEAISQLHDCSSQFLKDIPSDDMILVKSICASWGVSIS 109

[Close]
BLAST of Clc06G12710 vs. NCBI nr
Match: KAA0050079.1 (hypothetical protein E6C27_scaffold675G00630 [Cucumis melo var. makuwa])

HSP 1 Score: 148.3 bits (373), Expect = 4.0e-32
Identity = 80/110 (72.73%), Postives = 89/110 (80.91%), Query Frame = 0 

Query: 3   SSPTKLPLVLLVCFAILALSSVTARSETVPTAAPDSFVTEDFSLFPFISFVPEATKCVID 62
           S+ TKLPLVL VC AILA SSVTA    V  A P S   EDFSLFP ISFVP+ATKCVID
Sbjct: 4   SAITKLPLVLRVCIAILA-SSVTACPTIVAAATPTS---EDFSLFPCISFVPKATKCVID 63

Query: 63  VLKQAVAPHPSCCKAISKLYDCSSEFLKDIPSTDMILIKGVCAMWGVSIS 113
           VLK  VAPHPSCC+AI++L+DCSS+FLKDIPS DMIL+K +CA WGVSIS
Sbjct: 64  VLKNVVAPHPSCCEAITQLHDCSSQFLKDIPSGDMILVKSICASWGVSIS 109

[Close]
BLAST of Clc06G12710 vs. NCBI nr
Match: KAA0050065.1 (hypothetical protein E6C27_scaffold675G00460 [Cucumis melo var. makuwa])

HSP 1 Score: 146.7 bits (369), Expect = 1.2e-31
Identity = 79/112 (70.54%), Postives = 90/112 (80.36%), Query Frame = 0 

Query: 1   MASSPTKLPLVLLVCFAILALSSVTARSETVPTAAPDSFVTEDFSLFPFISFVPEATKCV 60
           MA+S TKLPL LL C  ILA SSV AR  TV  AAP+     D SLFP  SFVP+AT+CV
Sbjct: 1   MAASFTKLPLALLFCIFILA-SSVMARPVTVAAAAPEG----DISLFPCKSFVPKATECV 60

Query: 61  IDVLKQAVAPHPSCCKAISKLYDCSSEFLKDIPSTDMILIKGVCAMWGVSIS 113
           IDVLK AVAPHPSCC+AIS+L+DCSS+FLKDIPS DMIL+K +CA+WGVSIS
Sbjct: 61  IDVLKNAVAPHPSCCQAISELHDCSSQFLKDIPSVDMILVKSICALWGVSIS 107

[Close]
BLAST of Clc06G12710 vs. NCBI nr
Match: TYK10343.1 (hypothetical protein E5676_scaffold367G00180 [Cucumis melo var. makuwa])

HSP 1 Score: 144.8 bits (364), Expect = 4.4e-31
Identity = 79/112 (70.54%), Postives = 89/112 (79.46%), Query Frame = 0 

Query: 1   MASSPTKLPLVLLVCFAILALSSVTARSETVPTAAPDSFVTEDFSLFPFISFVPEATKCV 60
           MA+S TKLPL LL C  ILA SSV AR  TV  AAP      D SLFP  SFVP+AT+CV
Sbjct: 1   MAASFTKLPLALLFCIFILA-SSVMARPVTVAAAAP----IGDISLFPCKSFVPKATECV 60

Query: 61  IDVLKQAVAPHPSCCKAISKLYDCSSEFLKDIPSTDMILIKGVCAMWGVSIS 113
           IDVLK AVAPHPSCC+AIS+L+DCSS+FLKDIPS DMIL+K +CA+WGVSIS
Sbjct: 61  IDVLKNAVAPHPSCCQAISELHDCSSQFLKDIPSVDMILVKSICALWGVSIS 107

[Close]
BLAST of Clc06G12710 vs. ExPASy TrEMBL
Match: A0A5D3CFS6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00210 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 3.2e-35
Identity = 84/110 (76.36%), Postives = 93/110 (84.55%), Query Frame = 0 

Query: 3   SSPTKLPLVLLVCFAILALSSVTARSETVPTAAPDSFVTEDFSLFPFISFVPEATKCVID 62
           S+ TKLPLVLLVC AILA SSVTAR   V  A P S   EDFSLFP ISFVP+ATKCVID
Sbjct: 4   SAITKLPLVLLVCIAILA-SSVTARPTIVAAATPTS---EDFSLFPCISFVPKATKCVID 63

Query: 63  VLKQAVAPHPSCCKAISKLYDCSSEFLKDIPSTDMILIKGVCAMWGVSIS 113
           VLK AVAPHPSCC+AIS+L+DCSS+FLKDIPS+DMIL+K +CA WGVSIS
Sbjct: 64  VLKNAVAPHPSCCEAISQLHDCSSQFLKDIPSSDMILVKSICASWGVSIS 109

[Close]
BLAST of Clc06G12710 vs. ExPASy TrEMBL
Match: A0A5A7U2D8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00440 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 1.1e-32
Identity = 80/110 (72.73%), Postives = 91/110 (82.73%), Query Frame = 0 

Query: 3   SSPTKLPLVLLVCFAILALSSVTARSETVPTAAPDSFVTEDFSLFPFISFVPEATKCVID 62
           S+ TKLPL+LLVC AILA SSVTAR   V  A P   +++DFSLFP ISFVP ATK VID
Sbjct: 4   SAITKLPLILLVCIAILA-SSVTARPTIVAAATP---ISKDFSLFPCISFVPMATKRVID 63

Query: 63  VLKQAVAPHPSCCKAISKLYDCSSEFLKDIPSTDMILIKGVCAMWGVSIS 113
           VLK AVAPHPSCC+AIS+L+DCSS+FLKDIPS DMIL+K +CA WGVSIS
Sbjct: 64  VLKNAVAPHPSCCEAISQLHDCSSQFLKDIPSDDMILVKSICASWGVSIS 109

[Close]
BLAST of Clc06G12710 vs. ExPASy TrEMBL
Match: A0A5A7U9B0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00630 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.9e-32
Identity = 80/110 (72.73%), Postives = 89/110 (80.91%), Query Frame = 0 

Query: 3   SSPTKLPLVLLVCFAILALSSVTARSETVPTAAPDSFVTEDFSLFPFISFVPEATKCVID 62
           S+ TKLPLVL VC AILA SSVTA    V  A P S   EDFSLFP ISFVP+ATKCVID
Sbjct: 4   SAITKLPLVLRVCIAILA-SSVTACPTIVAAATPTS---EDFSLFPCISFVPKATKCVID 63

Query: 63  VLKQAVAPHPSCCKAISKLYDCSSEFLKDIPSTDMILIKGVCAMWGVSIS 113
           VLK  VAPHPSCC+AI++L+DCSS+FLKDIPS DMIL+K +CA WGVSIS
Sbjct: 64  VLKNVVAPHPSCCEAITQLHDCSSQFLKDIPSGDMILVKSICASWGVSIS 109

[Close]
BLAST of Clc06G12710 vs. ExPASy TrEMBL
Match: A0A5A7U8Y3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00460 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 5.6e-32
Identity = 79/112 (70.54%), Postives = 90/112 (80.36%), Query Frame = 0 

Query: 1   MASSPTKLPLVLLVCFAILALSSVTARSETVPTAAPDSFVTEDFSLFPFISFVPEATKCV 60
           MA+S TKLPL LL C  ILA SSV AR  TV  AAP+     D SLFP  SFVP+AT+CV
Sbjct: 1   MAASFTKLPLALLFCIFILA-SSVMARPVTVAAAAPEG----DISLFPCKSFVPKATECV 60

Query: 61  IDVLKQAVAPHPSCCKAISKLYDCSSEFLKDIPSTDMILIKGVCAMWGVSIS 113
           IDVLK AVAPHPSCC+AIS+L+DCSS+FLKDIPS DMIL+K +CA+WGVSIS
Sbjct: 61  IDVLKNAVAPHPSCCQAISELHDCSSQFLKDIPSVDMILVKSICALWGVSIS 107

[Close]
BLAST of Clc06G12710 vs. ExPASy TrEMBL
Match: A0A5D3CEQ4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00180 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 2.1e-31
Identity = 79/112 (70.54%), Postives = 89/112 (79.46%), Query Frame = 0 

Query: 1   MASSPTKLPLVLLVCFAILALSSVTARSETVPTAAPDSFVTEDFSLFPFISFVPEATKCV 60
           MA+S TKLPL LL C  ILA SSV AR  TV  AAP      D SLFP  SFVP+AT+CV
Sbjct: 1   MAASFTKLPLALLFCIFILA-SSVMARPVTVAAAAP----IGDISLFPCKSFVPKATECV 60

Query: 61  IDVLKQAVAPHPSCCKAISKLYDCSSEFLKDIPSTDMILIKGVCAMWGVSIS 113
           IDVLK AVAPHPSCC+AIS+L+DCSS+FLKDIPS DMIL+K +CA+WGVSIS
Sbjct: 61  IDVLKNAVAPHPSCCQAISELHDCSSQFLKDIPSVDMILVKSICALWGVSIS 107

The following BLAST results are available for this feature:
BLAST of Clc06G12710 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK10345.16.6e-3576.36hypothetical protein E5676_scaffold367G00210 [Cucumis melo var. makuwa][more]
KAA0050063.12.3e-3272.73hypothetical protein E6C27_scaffold675G00440 [Cucumis melo var. makuwa][more]
KAA0050079.14.0e-3272.73hypothetical protein E6C27_scaffold675G00630 [Cucumis melo var. makuwa][more]
KAA0050065.11.2e-3170.54hypothetical protein E6C27_scaffold675G00460 [Cucumis melo var. makuwa][more]
TYK10343.14.4e-3170.54hypothetical protein E5676_scaffold367G00180 [Cucumis melo var. makuwa][more]
BLAST of Clc06G12710 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Clc06G12710 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CFS63.2e-3576.36Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7U2D81.1e-3272.73Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7U9B01.9e-3272.73Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7U8Y35.6e-3270.54Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3CEQ42.1e-3170.54Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of Clc06G12710 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc06G12710.1Clc06G12710.1mRNA