Clc06G12520 (gene) Watermelon (cordophanus) v2

Overview
NameClc06G12520
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
LocationClcChr06: 23342295 .. 23342931 (-)
RNA-Seq ExpressionClc06G12520
SyntenyClc06G12520
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGTTTTCCGAGCAGTCAACTTTGTCCAACCCCATTCTTTTGCAAAAAGTTGACTCTGACTTCCCCTTCTTCAACCAAATTCAACTCTCTTCATCCCTTCCAACCGGATTTCTCTCGATGATTCTTTCTTATTTCTGTCGGCTACTGCCTTCCAATTCGTTCTTATCCACATTTTTGTCTGCTTCCCCGGCGATGCCTCTCTTGCTGCTGTTCTTCTGATCGGAACTTCAATTGGTTGGGTTCTCAGTTTTGGGCGATTCGTGAAAGCGAGTTTCGATCGTCTCCGACTTCGTGGAATCTTGCGCAATTTTGAGAGTTACATTGGAAATTTGTTGCTATTTTTGATATCGGATTTTCCCCCCTCTGATGTAAATGGACTGATTTTGAAAGGAGAATTTTGATGGGATTTTGCTGGCAGTAAGAGAAATAAATGCTTCACTGTATAGAGTTCGTGTAATTTTCTCATTGGTTGCTGTTTGAAGTCATAGTTGCTATATCATTTGATTTTTTGGCCTCTTGTTTACCTTACGATTCTGTTGCGTCTTGTTAGTCATTTGATGAACTGGACATCATAGAATTTGGCTTTGCGCTTACCGCGCCGGCGAATGACCGTACTCGCTTGTTGAAATTTTGA

mRNA sequence

ATGGTGTTTTCCGAGCAGTCAACTTTGTCCAACCCCATTCTTTTGCAAAAAGTTGACTCTGACTTCCCCTTCTTCAACCAAATTCAACTCTCTTCATCCCTTCCAACCGGATTTCTCTCGATGATTCTTTCTTATTTCTGTCGGCTACTGCCTTCCAATTCTTTTGGGCGATTCGTGAAAGCGAGTTTCGATCGTCTCCGACTTCGTGGAATCTTGCGCAATTTTGAGAGTTACATTGGAAATTTGTTGCTATTTTTGATATCGGATTTTCCCCCCTCTGATTCATTTGATGAACTGGACATCATAGAATTTGGCTTTGCGCTTACCGCGCCGGCGAATGACCGTACTCGCTTGTTGAAATTTTGA

Coding sequence (CDS)

ATGGTGTTTTCCGAGCAGTCAACTTTGTCCAACCCCATTCTTTTGCAAAAAGTTGACTCTGACTTCCCCTTCTTCAACCAAATTCAACTCTCTTCATCCCTTCCAACCGGATTTCTCTCGATGATTCTTTCTTATTTCTGTCGGCTACTGCCTTCCAATTCTTTTGGGCGATTCGTGAAAGCGAGTTTCGATCGTCTCCGACTTCGTGGAATCTTGCGCAATTTTGAGAGTTACATTGGAAATTTGTTGCTATTTTTGATATCGGATTTTCCCCCCTCTGATTCATTTGATGAACTGGACATCATAGAATTTGGCTTTGCGCTTACCGCGCCGGCGAATGACCGTACTCGCTTGTTGAAATTTTGA

Protein sequence

MVFSEQSTLSNPILLQKVDSDFPFFNQIQLSSSLPTGFLSMILSYFCRLLPSNSFGRFVKASFDRLRLRGILRNFESYIGNLLLFLISDFPPSDSFDELDIIEFGFALTAPANDRTRLLKF
Homology
[Close]
BLAST of Clc06G12520 vs. NCBI nr
Match: KAG6589819.1 (hypothetical protein SDJN03_15242, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 66.6 bits (161), Expect = 1.7e-07
Identity = 42/69 (60.87%), Postives = 48/69 (69.57%), Query Frame = 0 

Query: 1  MVFSEQSTLSNPILLQKVDSDFPFFNQIQLSSSLPTGFLSMI---LSYFCRLLPSN--SF 60
          MVF EQSTLSNPILLQ VD DF   NQ+QLSSSLP+GFLS+    LS +  LL S+  +F
Sbjct: 3  MVFYEQSTLSNPILLQNVDFDFALHNQVQLSSSLPSGFLSLTLPSLSLYDSLLFSSATAF 62

Query: 61 GRFVKASFD 65
          G  V  S D
Sbjct: 63 GIVVIYSID 71

The following BLAST results are available for this feature:
BLAST of Clc06G12520 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6589819.11.7e-0760.87hypothetical protein SDJN03_15242, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Clc06G12520 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Clc06G12520 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Clc06G12520 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc06G12520.2Clc06G12520.2mRNA