Clc06G12300 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc06G12300
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Auxin-responsive protein
Location	ClcChr06: 23004706 .. 23006282 (-)
RNA-Seq Expression	Clc06G12300
Synteny	Clc06G12300

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTATGGAGCTTCAACTTGGCCTTGCTTTAATCCCCACCAATCCCATCAAACCCTTCGACTTAAACACTCATACAAACACTCCCCTCTGTTTGGATTTTGATTCTATCACTCACAAAAAGCGTTCTCTCGACTTTGACTCCTCTGCGGCGTTTCGTCTAACACTTCCTCTGCTTCTATGGAATGACCATCCAAATGATGGCGATGACGACGATGACTCTAATGACCCCCATTCCGCTTCCTCTAATGATTCGTATGCTAATATCTCTTACCCATTTTTCGCTTTTTAATTTGGAATTTGATTTGATTTGATGACTGAAATTTTGTTTGGGTGATGTAACAGAGACGAGGATGAGGAACGGGAGAATGGGCTTGTGGGATGGCCGCCGCTTAAGAAGAGGAGGAAGAGTCTTTTCATGCAGAAACGCGTCGGACGGGGCGCGGTGATAAGGCGTCGACCGGCGGTGGAGAACGGCGGCGGGTTTTACAGAGGACTGAATTCGAATAATTCTCGATACGTGAAGGTGAAGATGGAAGGAGTGGGAATTGCTAGGAAGGTTGATTTGAGCCAATACCATTCTTTTGATGCGCTTAGAGCCACTTTGATGAACATGTTTGGTGAGCTTGTTTTCTCACCCAATCACAAATCATTTTTTTTAAAAAAAAGGAAAAAAAAAATCGGTTCAAAACAATTTGATCACCGAAACAAACTAAATTAGGAATTTTGTCAAAAAAAAAAAAAAAAAATCTAGAAAAAGATAGAATTTAGTTTATGTGGTTTTAAAGTTACAATTTGCATGATTAGTATGGTTAGAAGAAAATTAGAATGTTGTCCTTTAGGTCCAGAAAATTAAAATTTGATCATTGTAGTTTAAAAAAAAGTTAAAATTTAGTCTTTATTTTAAAGACTATTTTGAGTATTTTATCAAATCATGGGGTCTAAATTTTAATTTTAAATATAAGGACTACATTCAAATTTTCTTAAAAATCATTGAGACTAAATTTACAATTTAACCACTCAAATACCTATTTAAGGACAATGATTATGTGTAGACTTTATTACACCAAATCCCTCCGTGACAAGAAAATAATAATTTAACTTAAAAAATAATAATAATAAAGTTACTTCCTACATGACAAATTTTAATTGGATAACCGGTAGGGCTACACTTTTAAACCTATTTTCATAGTATTAAAATTGATTTTTAAGGATTAAAATCATATTTCAAGTGATTTTGAAAACAATAAAAATAATTTTAGCTATTTTAAAATCATTACCAACCATATCATGTACTGATTTTTGAGTTGTTTCGGGTTGTTTGGATAACAGATGAAACGGATTCAGAACGTTACAAGCTCACTTACCAAAATGTCTATGGTGACTGGTTACTTGCTGAGAACTTAACTTGGAGGTAAAGCTAAAGATAATATTTAAACTGTTTGTATTAAAAATTTGAGGGGGGTTTTGATTTGGACAGGGATTTCTTCGGAACTGTTCAACGGATCAAACTGGAAAAGAAGAGCGGCTGATGAGGGGTTACCGGCGGTGGTGGTCAGAGAATCAGATGCTGTCTAA

mRNA sequence

ATGCCTATGGAGCTTCAACTTGGCCTTGCTTTAATCCCCACCAATCCCATCAAACCCTTCGACTTAAACACTCATACAAACACTCCCCTCTGTTTGGATTTTGATTCTATCACTCACAAAAAGCGTTCTCTCGACTTTGACTCCTCTGCGGCGTTTCGTCTAACACTTCCTCTGCTTCTATGGAATGACCATCCAAATGATGGCGATGACGACGATGACTCTAATGACCCCCATTCCGCTTCCTCTAATGATTCAGACGAGGATGAGGAACGGGAGAATGGGCTTGTGGGATGGCCGCCGCTTAAGAAGAGGAGGAAGAGTCTTTTCATGCAGAAACGCGTCGGACGGGGCGCGGTGATAAGGCGTCGACCGGCGGTGGAGAACGGCGGCGGGTTTTACAGAGGACTGAATTCGAATAATTCTCGATACGTGAAGGTGAAGATGGAAGGAGTGGGAATTGCTAGGAAGGTTGATTTGAGCCAATACCATTCTTTTGATGCGCTTAGAGCCACTTTGATGAACATGTTTGATGAAACGGATTCAGAACGTTACAAGCTCACTTACCAAAATGTCTATGGTGACTGGTTACTTGCTGAGAACTTAACTTGGAGGGGGGTTTTGATTTGGACAGGGATTTCTTCGGAACTGTTCAACGGATCAAACTGGAAAAGAAGAGCGGCTGATGAGGGGTTACCGGCGGTGGTGGTCAGAGAATCAGATGCTGTCTAA

Coding sequence (CDS)

ATGCCTATGGAGCTTCAACTTGGCCTTGCTTTAATCCCCACCAATCCCATCAAACCCTTCGACTTAAACACTCATACAAACACTCCCCTCTGTTTGGATTTTGATTCTATCACTCACAAAAAGCGTTCTCTCGACTTTGACTCCTCTGCGGCGTTTCGTCTAACACTTCCTCTGCTTCTATGGAATGACCATCCAAATGATGGCGATGACGACGATGACTCTAATGACCCCCATTCCGCTTCCTCTAATGATTCAGACGAGGATGAGGAACGGGAGAATGGGCTTGTGGGATGGCCGCCGCTTAAGAAGAGGAGGAAGAGTCTTTTCATGCAGAAACGCGTCGGACGGGGCGCGGTGATAAGGCGTCGACCGGCGGTGGAGAACGGCGGCGGGTTTTACAGAGGACTGAATTCGAATAATTCTCGATACGTGAAGGTGAAGATGGAAGGAGTGGGAATTGCTAGGAAGGTTGATTTGAGCCAATACCATTCTTTTGATGCGCTTAGAGCCACTTTGATGAACATGTTTGATGAAACGGATTCAGAACGTTACAAGCTCACTTACCAAAATGTCTATGGTGACTGGTTACTTGCTGAGAACTTAACTTGGAGGGGGGTTTTGATTTGGACAGGGATTTCTTCGGAACTGTTCAACGGATCAAACTGGAAAAGAAGAGCGGCTGATGAGGGGTTACCGGCGGTGGTGGTCAGAGAATCAGATGCTGTCTAA

Protein sequence

MPMELQLGLALIPTNPIKPFDLNTHTNTPLCLDFDSITHKKRSLDFDSSAAFRLTLPLLLWNDHPNDGDDDDDSNDPHSASSNDSDEDEERENGLVGWPPLKKRRKSLFMQKRVGRGAVIRRRPAVENGGGFYRGLNSNNSRYVKVKMEGVGIARKVDLSQYHSFDALRATLMNMFDETDSERYKLTYQNVYGDWLLAENLTWRGVLIWTGISSELFNGSNWKRRAADEGLPAVVVRESDAV

Homology

[Close]

BLAST of Clc06G12300 vs. NCBI nr
Match: XP_038879327.1 (auxin-responsive protein IAA29-like [Benincasa hispida])

HSP 1 Score: 353.2 bits (905), Expect = 1.8e-93
Identity = 180/210 (85.71%), Postives = 189/210 (90.00%), Query Frame = 0


Query: 1   MPMELQLGLALIPTNPIKPFDLNTHTN---TPLCLDFDSITHKKRSLDFDSSAAFRLTLP 60
           M MELQLGLAL PTNPIKPFDLNTH N    PLC DFDSITHKKRS DF+ SAAFR TLP
Sbjct: 1   MAMELQLGLALTPTNPIKPFDLNTHHNNPHNPLCFDFDSITHKKRSRDFNHSAAFRRTLP 60

Query: 61  LLLWNDHPNDGDDDDDSNDPHSASSNDSDEDEERENGLVGWPPLKKRRKSLFMQKRVGRG 120
           LLLWNDHPNDG DDDDSNDPHSASSNDSDE+EERENGLVGWPPLKKRRKSLFM+K VGR 
Sbjct: 61  LLLWNDHPNDG-DDDDSNDPHSASSNDSDEEEERENGLVGWPPLKKRRKSLFMKKHVGRA 120

Query: 121 AVIRRRPAVENGGGFYRGLNSNNSRYVKVKMEGVGIARKVDLSQYHSFDALRATLMNMFD 180
           AVI RRP VENGGGFYRGLNSN SRYVKVKMEGVGIARKVDLSQ+HSFDALRATLMNMFD
Sbjct: 121 AVI-RRPMVENGGGFYRGLNSNYSRYVKVKMEGVGIARKVDLSQHHSFDALRATLMNMFD 180

Query: 181 ETDSERYKLTYQNVYGDWLLAENLTWRGVL 208
           ETDS+ Y+LTYQN+ GDWLLAEN+TWR  +
Sbjct: 181 ETDSDDYRLTYQNIDGDWLLAENVTWRNFI 208

[Close]

BLAST of Clc06G12300 vs. NCBI nr
Match: KGN65132.1 (hypothetical protein Csa_023489 [Cucumis sativus])

HSP 1 Score: 323.6 bits (828), Expect = 1.5e-84
Identity = 165/207 (79.71%), Postives = 179/207 (86.47%), Query Frame = 0


Query: 1   MPMELQLGLALIPTNPIKPFDLNTHTNTPLCLDFDSITHKKRSLDFDSSAAFRLTLPLLL 60
           M MELQLGLALIPTNPIKPFDLNTH N P+ L FDSI HKKRS   DS A FR TLPLLL
Sbjct: 83  MAMELQLGLALIPTNPIKPFDLNTHNNNPISLVFDSINHKKRSRHLDSPATFRQTLPLLL 142

Query: 61  WNDHPNDGDDDDDSNDPHSASSNDSDEDEERENGLVGWPPLKKRRKSLFMQKRVGRGAVI 120
           WNDHPNDG DDDD NDPHSASSNDSDE+EE ENGLVGWPPLKKRRKSLFM++ VGR AVI
Sbjct: 143 WNDHPNDG-DDDDPNDPHSASSNDSDEEEEEENGLVGWPPLKKRRKSLFMKEGVGRRAVI 202

Query: 121 RRRPAVENGGGFYRGLNSNNSRYVKVKMEGVGIARKVDLSQYHSFDALRATLMNMFDETD 180
            RRPAV+N G F+RGL+ NNSRYVKVKMEGVGIARKVDL ++HSFDALRATLM MFDET+
Sbjct: 203 -RRPAVKNDGVFWRGLDLNNSRYVKVKMEGVGIARKVDLREHHSFDALRATLMKMFDETN 262

Query: 181 SERYKLTYQNVYGDWLLAENLTWRGVL 208
           SE YKLT+QN  G+WLLAEN+TWR  +
Sbjct: 263 SEGYKLTFQNTKGEWLLAENVTWRNFI 287

[Close]

BLAST of Clc06G12300 vs. NCBI nr
Match: XP_004150206.2 (auxin-responsive protein IAA29 [Cucumis sativus])

HSP 1 Score: 323.6 bits (828), Expect = 1.5e-84
Identity = 165/207 (79.71%), Postives = 179/207 (86.47%), Query Frame = 0


Query: 1   MPMELQLGLALIPTNPIKPFDLNTHTNTPLCLDFDSITHKKRSLDFDSSAAFRLTLPLLL 60
           M MELQLGLALIPTNPIKPFDLNTH N P+ L FDSI HKKRS   DS A FR TLPLLL
Sbjct: 1   MAMELQLGLALIPTNPIKPFDLNTHNNNPISLVFDSINHKKRSRHLDSPATFRQTLPLLL 60

Query: 61  WNDHPNDGDDDDDSNDPHSASSNDSDEDEERENGLVGWPPLKKRRKSLFMQKRVGRGAVI 120
           WNDHPNDG DDDD NDPHSASSNDSDE+EE ENGLVGWPPLKKRRKSLFM++ VGR AVI
Sbjct: 61  WNDHPNDG-DDDDPNDPHSASSNDSDEEEEEENGLVGWPPLKKRRKSLFMKEGVGRRAVI 120

Query: 121 RRRPAVENGGGFYRGLNSNNSRYVKVKMEGVGIARKVDLSQYHSFDALRATLMNMFDETD 180
            RRPAV+N G F+RGL+ NNSRYVKVKMEGVGIARKVDL ++HSFDALRATLM MFDET+
Sbjct: 121 -RRPAVKNDGVFWRGLDLNNSRYVKVKMEGVGIARKVDLREHHSFDALRATLMKMFDETN 180

Query: 181 SERYKLTYQNVYGDWLLAENLTWRGVL 208
           SE YKLT+QN  G+WLLAEN+TWR  +
Sbjct: 181 SEGYKLTFQNTKGEWLLAENVTWRNFI 205

[Close]

BLAST of Clc06G12300 vs. NCBI nr
Match: XP_008443966.1 (PREDICTED: auxin-responsive protein IAA29-like [Cucumis melo])

HSP 1 Score: 316.2 bits (809), Expect = 2.4e-82
Identity = 166/209 (79.43%), Postives = 181/209 (86.60%), Query Frame = 0


Query: 1   MPMELQLGLALIPTNPIKPFDLNTHTNTPLCLDFDSITHKKRSLDFDSSAAF-RLTLPLL 60
           M MELQLGLALIPTNPIKPFDLNTH N P+ L FDSI HKKRS   DSS  F R TLPLL
Sbjct: 1   MAMELQLGLALIPTNPIKPFDLNTHNNNPISLVFDSINHKKRSRHLDSSPTFPRTTLPLL 60

Query: 61  LWNDHPNDGDDDDDSNDPHSASSNDSD-EDEERENGLVGWPPLKKRRKSLFMQKRVGRGA 120
           LWNDHPNDG D DDSNDP SASSNDSD E+EERENGLVGWPPLKKRRKSLFM++ VGR A
Sbjct: 61  LWNDHPNDG-DGDDSNDPLSASSNDSDEEEEERENGLVGWPPLKKRRKSLFMKEGVGRRA 120

Query: 121 VIRRRPAVENGGGFYRGLNSNNSRYVKVKMEGVGIARKVDLSQYHSFDALRATLMNMFDE 180
           VI RRPAV+N GGF+RGL+ NNSRYVKVKMEGVGIARKVDL ++HSFDALRATLMNMFDE
Sbjct: 121 VI-RRPAVKNDGGFWRGLDLNNSRYVKVKMEGVGIARKVDLREHHSFDALRATLMNMFDE 180

Query: 181 TDSERYKLTYQNVYGDWLLAENLTWRGVL 208
           T+SE Y+LT+QN  G+WLLAEN+TWR  +
Sbjct: 181 TNSEGYRLTFQNTNGEWLLAENVTWRNFI 207

[Close]

BLAST of Clc06G12300 vs. NCBI nr
Match: XP_022987761.1 (uncharacterized protein LOC111485214 isoform X2 [Cucurbita maxima])

HSP 1 Score: 288.1 bits (736), Expect = 7.0e-74
Identity = 148/204 (72.55%), Postives = 167/204 (81.86%), Query Frame = 0


Query: 1   MPMELQLGLALIPTNPIKPFDLNTHTNTPLCLDFDSITHKKRSLDFDSSAAFRLTLPLLL 60
           M MELQLGLAL PTNP KPF LNTH     CLDFDSI+ KKR LD D S+AFR TLPLLL
Sbjct: 79  MAMELQLGLALFPTNPTKPFHLNTHHRALPCLDFDSISGKKRPLDIDPSSAFRRTLPLLL 138

Query: 61  WNDHPNDGDDDDDSNDPHSASSNDSDEDEERENGLVGWPPLKKRRKSLFMQKRVGRGAVI 120
           WNDHPNDG  DDD NDP+SASSN  D  +E+E  LVGWPPLKKRRK+LF+QKR+ R AV+
Sbjct: 139 WNDHPNDG--DDDPNDPNSASSNHPDNPKEQEIELVGWPPLKKRRKTLFVQKRI-RRAVV 198

Query: 121 RRRPAVENGGGFYRGLNSNNSRYVKVKMEGVGIARKVDLSQYHSFDALRATLMNMFDETD 180
            RRPA+ENGGG +R LNSNNS YVKVKMEGVGI RKVD+ Q+H FDALRATLMNMFD+ D
Sbjct: 199 IRRPAMENGGGVHRELNSNNSLYVKVKMEGVGIGRKVDIRQHHCFDALRATLMNMFDKPD 258

Query: 181 SERYKLTYQNVYGDWLLAENLTWR 205
           S+ Y LTYQ+  GDWLLA+++TWR
Sbjct: 259 SDGYNLTYQDTDGDWLLADDVTWR 279

[Close]

BLAST of Clc06G12300 vs. ExPASy Swiss-Prot
Match: Q93WC4 (Auxin-responsive protein IAA29 OS=Arabidopsis thaliana OX=3702 GN=IAA29 PE=1 SV=2)

HSP 1 Score: 82.8 bits (203), Expect = 5.8e-15
Identity = 73/235 (31.06%), Postives = 108/235 (45.96%), Query Frame = 0


Query: 3   MELQLGLALIPTNPIK---PFDLNTH---TNTPLCLDFDSITHKKR-SLDFDSSAAFRLT 62
           MEL LGL+L P    K    FDLN H        CL  + +  +    L       +   
Sbjct: 1   MELDLGLSLSPHKSSKLGFNFDLNKHCAIEGAASCLGTEKLRFEATFGLGNVEENCYMPK 60

Query: 63  LPLLLWNDHPNDGDDDDDSNDPHSASSNDSDEDEERENGLVGWPPLK--KRRKSLFMQKR 122
             L   N  PN+ D+     DP  + S+   +DEE  + +VGWPP+K    +   +  + 
Sbjct: 61  QRLFALNGQPNEEDE-----DPLESESSIVYDDEEENSEVVGWPPVKTCMIKYGSYHHRH 120

Query: 123 V---------GRGAVIRRRPAVEN----------GGGFYRGLNSNNSRYVKVKMEGVGIA 182
           +          RG   RR  A+ N          G      ++S +S YVKVKM+GV IA
Sbjct: 121 IRNHHHCPYHHRG---RRITAMNNNISNPTTATVGSSSSSSISSRSSMYVKVKMDGVAIA 180

Query: 183 RKVDLSQYHSFDALRATLMNMFDE-----TDSERYKLTYQNVYGDWLLAENLTWR 205
           RKVD+  ++S+++L  +L+ MF E      +   Y  T+Q   GDWLL  ++TW+
Sbjct: 181 RKVDIKLFNSYESLTNSLITMFTEYEDCDREDTNYTFTFQGKEGDWLLRGDVTWK 227

[Close]

BLAST of Clc06G12300 vs. ExPASy Swiss-Prot
Match: Q69TU6 (Auxin-responsive protein IAA22 OS=Oryza sativa subsp. japonica OX=39947 GN=IAA22 PE=2 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 4.1e-08
Identity = 42/149 (28.19%), Postives = 71/149 (47.65%), Query Frame = 0


Query: 80  ASSNDSDEDEERENG-LVGWPPLKKRRKSLFMQKRVGRGAVIRR-RPAVENGGGFYRGLN 139
           A  N+S E+    +  LVGWPP++  RK+L   K      ++ + +P  + G G      
Sbjct: 25  AGWNESGENRAASSAQLVGWPPVRTFRKNLSTPKPADADDLMNKMKPCSDEGHGSRDAAQ 84

Query: 140 S---NNSRYVKVKMEGVGIARKVDLSQYHSFDALRATLMNMF------------------ 199
               +++ +VKV +EG  + RK+DL  + S+D+L   L +MF                  
Sbjct: 85  ERRPSSTMFVKVNLEGYAVGRKIDLKAHRSYDSLSQALQSMFHGFLSDGIATRDNELQRM 144

Query: 200 DETDSERYKLTYQNVYGDWLLAENLTWRG 206
           +E   +RY L Y++  GD +L  ++ W G
Sbjct: 145 EEGSKKRYVLVYEDNEGDRMLVGDVPWDG 173

[Close]

BLAST of Clc06G12300 vs. ExPASy Swiss-Prot
Match: A2XLV9 (Auxin-responsive protein IAA13 OS=Oryza sativa subsp. indica OX=39946 GN=IAA13 PE=2 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 5.3e-08
Identity = 40/143 (27.97%), Postives = 68/143 (47.55%), Query Frame = 0


Query: 77  PHSASSNDSDEDEERENGLVGWPPLKKRRKSLF-----MQKRVGRGAVIRRRPAVENGGG 136
           P  A++ D+++    +   VGWPP++  R+++        K+       +++PA    G 
Sbjct: 69  PAEAAAADAEKPPAPKAQAVGWPPVRSFRRNIMTVQSVKSKKEEEADKQQQQPAANASG- 128

Query: 137 FYRGLNSNNSRYVKVKMEGVGIARKVDLSQYHSFDALRATLMNMF----------DETDS 196
                 SN+S +VKV M+G    RKVDL  Y+S+  L   L  MF          +E + 
Sbjct: 129 ------SNSSAFVKVSMDGAPYLRKVDLKMYNSYKDLSLALQKMFGTFTATGNNMNEVNG 188

Query: 197 ERYKLTYQNVYGDWLLAENLTWR 205
                TY++  GDW+L  ++ W+
Sbjct: 189 SDAVTTYEDKDGDWMLVGDVPWQ 204

[Close]

BLAST of Clc06G12300 vs. ExPASy Swiss-Prot
Match: Q10D34 (Auxin-responsive protein IAA13 OS=Oryza sativa subsp. japonica OX=39947 GN=IAA13 PE=2 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 5.3e-08
Identity = 40/143 (27.97%), Postives = 68/143 (47.55%), Query Frame = 0


Query: 77  PHSASSNDSDEDEERENGLVGWPPLKKRRKSLF-----MQKRVGRGAVIRRRPAVENGGG 136
           P  A++ D+++    +   VGWPP++  R+++        K+       +++PA    G 
Sbjct: 69  PAEAAAADAEKPPAPKAQAVGWPPVRSFRRNIMTVQSVKSKKEEEADKQQQQPAANASG- 128

Query: 137 FYRGLNSNNSRYVKVKMEGVGIARKVDLSQYHSFDALRATLMNMF----------DETDS 196
                 SN+S +VKV M+G    RKVDL  Y+S+  L   L  MF          +E + 
Sbjct: 129 ------SNSSAFVKVSMDGAPYLRKVDLKMYNSYKDLSLALQKMFGTFTATGNNMNEVNG 188

Query: 197 ERYKLTYQNVYGDWLLAENLTWR 205
                TY++  GDW+L  ++ W+
Sbjct: 189 SDAVTTYEDKDGDWMLVGDVPWQ 204

[Close]

BLAST of Clc06G12300 vs. ExPASy Swiss-Prot
Match: O24543 (Auxin-induced protein 22E OS=Vigna radiata var. radiata OX=3916 GN=AUX22E PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 6.9e-08
Identity = 43/143 (30.07%), Postives = 66/143 (46.15%), Query Frame = 0


Query: 71  DDDSNDPHSASSNDSDEDEERENGLVGWPPLKKRRKSLFMQKRVGRGAVIRRRPAVENGG 130
           + DS+D  + S ++ D  +  +  +VGWPP++  RK+   QK+V +G          +G 
Sbjct: 57  NSDSSDSTTTSDHNEDSVQPAKVQVVGWPPIRSFRKNSLQQKKVEQG----------DGT 116

Query: 131 GFYRGLNSNNSRYVKVKMEGVGIARKVDLSQYHSFDALRATLMNMFDETDSE-------- 190
           G           Y+KV M G    RK+DL  Y S+  L   L N+F  T  E        
Sbjct: 117 GM----------YLKVSMAGAPYLRKIDLKVYKSYPELLKALQNLFKCTFGEYSEREGYN 176

Query: 191 --RYKLTYQNVYGDWLLAENLTW 204
              Y  TY++  GDW+L  ++ W
Sbjct: 177 GSEYAPTYEDKDGDWMLVGDVPW 179

[Close]

BLAST of Clc06G12300 vs. ExPASy TrEMBL
Match: A0A0A0LWC5 (Auxin-responsive protein OS=Cucumis sativus OX=3659 GN=Csa_1G231530 PE=3 SV=1)

HSP 1 Score: 323.6 bits (828), Expect = 7.3e-85
Identity = 165/207 (79.71%), Postives = 179/207 (86.47%), Query Frame = 0


Query: 1   MPMELQLGLALIPTNPIKPFDLNTHTNTPLCLDFDSITHKKRSLDFDSSAAFRLTLPLLL 60
           M MELQLGLALIPTNPIKPFDLNTH N P+ L FDSI HKKRS   DS A FR TLPLLL
Sbjct: 83  MAMELQLGLALIPTNPIKPFDLNTHNNNPISLVFDSINHKKRSRHLDSPATFRQTLPLLL 142

Query: 61  WNDHPNDGDDDDDSNDPHSASSNDSDEDEERENGLVGWPPLKKRRKSLFMQKRVGRGAVI 120
           WNDHPNDG DDDD NDPHSASSNDSDE+EE ENGLVGWPPLKKRRKSLFM++ VGR AVI
Sbjct: 143 WNDHPNDG-DDDDPNDPHSASSNDSDEEEEEENGLVGWPPLKKRRKSLFMKEGVGRRAVI 202

Query: 121 RRRPAVENGGGFYRGLNSNNSRYVKVKMEGVGIARKVDLSQYHSFDALRATLMNMFDETD 180
            RRPAV+N G F+RGL+ NNSRYVKVKMEGVGIARKVDL ++HSFDALRATLM MFDET+
Sbjct: 203 -RRPAVKNDGVFWRGLDLNNSRYVKVKMEGVGIARKVDLREHHSFDALRATLMKMFDETN 262

Query: 181 SERYKLTYQNVYGDWLLAENLTWRGVL 208
           SE YKLT+QN  G+WLLAEN+TWR  +
Sbjct: 263 SEGYKLTFQNTKGEWLLAENVTWRNFI 287

[Close]

BLAST of Clc06G12300 vs. ExPASy TrEMBL
Match: A0A1S3B8T8 (Auxin-responsive protein OS=Cucumis melo OX=3656 GN=LOC103487427 PE=3 SV=1)

HSP 1 Score: 316.2 bits (809), Expect = 1.2e-82
Identity = 166/209 (79.43%), Postives = 181/209 (86.60%), Query Frame = 0


Query: 1   MPMELQLGLALIPTNPIKPFDLNTHTNTPLCLDFDSITHKKRSLDFDSSAAF-RLTLPLL 60
           M MELQLGLALIPTNPIKPFDLNTH N P+ L FDSI HKKRS   DSS  F R TLPLL
Sbjct: 1   MAMELQLGLALIPTNPIKPFDLNTHNNNPISLVFDSINHKKRSRHLDSSPTFPRTTLPLL 60

Query: 61  LWNDHPNDGDDDDDSNDPHSASSNDSD-EDEERENGLVGWPPLKKRRKSLFMQKRVGRGA 120
           LWNDHPNDG D DDSNDP SASSNDSD E+EERENGLVGWPPLKKRRKSLFM++ VGR A
Sbjct: 61  LWNDHPNDG-DGDDSNDPLSASSNDSDEEEEERENGLVGWPPLKKRRKSLFMKEGVGRRA 120

Query: 121 VIRRRPAVENGGGFYRGLNSNNSRYVKVKMEGVGIARKVDLSQYHSFDALRATLMNMFDE 180
           VI RRPAV+N GGF+RGL+ NNSRYVKVKMEGVGIARKVDL ++HSFDALRATLMNMFDE
Sbjct: 121 VI-RRPAVKNDGGFWRGLDLNNSRYVKVKMEGVGIARKVDLREHHSFDALRATLMNMFDE 180

Query: 181 TDSERYKLTYQNVYGDWLLAENLTWRGVL 208
           T+SE Y+LT+QN  G+WLLAEN+TWR  +
Sbjct: 181 TNSEGYRLTFQNTNGEWLLAENVTWRNFI 207

[Close]

BLAST of Clc06G12300 vs. ExPASy TrEMBL
Match: A0A6J1JF88 (Auxin-responsive protein OS=Cucurbita maxima OX=3661 GN=LOC111485214 PE=3 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 3.4e-74
Identity = 148/204 (72.55%), Postives = 167/204 (81.86%), Query Frame = 0


Query: 1   MPMELQLGLALIPTNPIKPFDLNTHTNTPLCLDFDSITHKKRSLDFDSSAAFRLTLPLLL 60
           M MELQLGLAL PTNP KPF LNTH     CLDFDSI+ KKR LD D S+AFR TLPLLL
Sbjct: 79  MAMELQLGLALFPTNPTKPFHLNTHHRALPCLDFDSISGKKRPLDIDPSSAFRRTLPLLL 138

Query: 61  WNDHPNDGDDDDDSNDPHSASSNDSDEDEERENGLVGWPPLKKRRKSLFMQKRVGRGAVI 120
           WNDHPNDG  DDD NDP+SASSN  D  +E+E  LVGWPPLKKRRK+LF+QKR+ R AV+
Sbjct: 139 WNDHPNDG--DDDPNDPNSASSNHPDNPKEQEIELVGWPPLKKRRKTLFVQKRI-RRAVV 198

Query: 121 RRRPAVENGGGFYRGLNSNNSRYVKVKMEGVGIARKVDLSQYHSFDALRATLMNMFDETD 180
            RRPA+ENGGG +R LNSNNS YVKVKMEGVGI RKVD+ Q+H FDALRATLMNMFD+ D
Sbjct: 199 IRRPAMENGGGVHRELNSNNSLYVKVKMEGVGIGRKVDIRQHHCFDALRATLMNMFDKPD 258

Query: 181 SERYKLTYQNVYGDWLLAENLTWR 205
           S+ Y LTYQ+  GDWLLA+++TWR
Sbjct: 259 SDGYNLTYQDTDGDWLLADDVTWR 279

[Close]

BLAST of Clc06G12300 vs. ExPASy TrEMBL
Match: A0A6J1HA19 (Auxin-responsive protein OS=Cucurbita moschata OX=3662 GN=LOC111461467 PE=3 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 7.5e-74
Identity = 148/204 (72.55%), Postives = 165/204 (80.88%), Query Frame = 0


Query: 1   MPMELQLGLALIPTNPIKPFDLNTHTNTPLCLDFDSITHKKRSLDFDSSAAFRLTLPLLL 60
           M MELQL LAL PTNP KPFDLNTH     CLDFDSI+ KKR LD D S+AFR TLPLLL
Sbjct: 1   MAMELQLSLALFPTNPTKPFDLNTHHRALPCLDFDSISRKKRPLDIDPSSAFRRTLPLLL 60

Query: 61  WNDHPNDGDDDDDSNDPHSASSNDSDEDEERENGLVGWPPLKKRRKSLFMQKRVGRGAVI 120
           WNDHPN+G  DDD  +P+SASSN  D  EE+E  LVGWPPLKKRRK+LF+QKR+GR AV 
Sbjct: 61  WNDHPNNG--DDDPKNPNSASSNHPDNPEEQEIELVGWPPLKKRRKTLFVQKRIGR-AVA 120

Query: 121 RRRPAVENGGGFYRGLNSNNSRYVKVKMEGVGIARKVDLSQYHSFDALRATLMNMFDETD 180
            RRPA+EN GG YR LNSNNSRYVKVKMEGVGI RKVD+ Q+H  DALRATLMNMFD+ D
Sbjct: 121 IRRPAMENDGGVYRELNSNNSRYVKVKMEGVGIGRKVDIRQHHCLDALRATLMNMFDKPD 180

Query: 181 SERYKLTYQNVYGDWLLAENLTWR 205
           S+ Y LTYQ+  GDWLLAE++TWR
Sbjct: 181 SDGYNLTYQDTDGDWLLAEDVTWR 201

[Close]

BLAST of Clc06G12300 vs. ExPASy TrEMBL
Match: A0A6J1CTH1 (Auxin-responsive protein OS=Momordica charantia OX=3673 GN=LOC111014437 PE=3 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 3.6e-60
Identity = 140/217 (64.52%), Postives = 157/217 (72.35%), Query Frame = 0


Query: 1   MPMELQLGLALIPTNPIKPFDLNTHTN--TPLCLDFDSITHKKRSLDFDSSAAFRLTLPL 60
           M MELQLGLALIPT   K FDLNTH +   P     D +  KKR+LDFD  +AFR TLPL
Sbjct: 1   MAMELQLGLALIPT---KGFDLNTHVHETAPSFEYLDPVCAKKRALDFDPCSAFRRTLPL 60

Query: 61  LLWNDHPNDGDDDDDSNDPHSASS-NDSDEDEERENGLVGWPPLKKRRKSLFMQKR---- 120
           LLWN HPNDG  DDD  D H +S+   +  D E  NGLVGWPPLKKRRK LFM+KR    
Sbjct: 61  LLWNHHPNDG--DDDPKDIHRSSAFRPNRRDAEEGNGLVGWPPLKKRRKRLFMEKRGHGR 120

Query: 121 ---VGRGAVIRRRPAVENGGGFYRGLNS--NNSRYVKVKMEGVGIARKVDLSQYHSFDAL 180
               GRG     R  VENGGGFYRG NS  +NSRYVKVKMEGVGIARKVDLS +HSF AL
Sbjct: 121 GRGRGRGPAAENRRPVENGGGFYRGSNSSTSNSRYVKVKMEGVGIARKVDLSLHHSFAAL 180

Query: 181 RATLMNMFDETDS-ERYKLTYQNVYGDWLLAENLTWR 205
            ATLMNMFDETDS + Y+LTYQ++ GDWLLA+++TWR
Sbjct: 181 TATLMNMFDETDSADAYRLTYQDIDGDWLLAQDVTWR 212

[Close]

BLAST of Clc06G12300 vs. TAIR 10
Match: AT4G32280.1 (indole-3-acetic acid inducible 29 )

HSP 1 Score: 82.8 bits (203), Expect = 4.2e-16
Identity = 73/235 (31.06%), Postives = 108/235 (45.96%), Query Frame = 0


Query: 3   MELQLGLALIPTNPIK---PFDLNTH---TNTPLCLDFDSITHKKR-SLDFDSSAAFRLT 62
           MEL LGL+L P    K    FDLN H        CL  + +  +    L       +   
Sbjct: 1   MELDLGLSLSPHKSSKLGFNFDLNKHCAIEGAASCLGTEKLRFEATFGLGNVEENCYMPK 60

Query: 63  LPLLLWNDHPNDGDDDDDSNDPHSASSNDSDEDEERENGLVGWPPLK--KRRKSLFMQKR 122
             L   N  PN+ D+     DP  + S+   +DEE  + +VGWPP+K    +   +  + 
Sbjct: 61  QRLFALNGQPNEEDE-----DPLESESSIVYDDEEENSEVVGWPPVKTCMIKYGSYHHRH 120

Query: 123 V---------GRGAVIRRRPAVEN----------GGGFYRGLNSNNSRYVKVKMEGVGIA 182
           +          RG   RR  A+ N          G      ++S +S YVKVKM+GV IA
Sbjct: 121 IRNHHHCPYHHRG---RRITAMNNNISNPTTATVGSSSSSSISSRSSMYVKVKMDGVAIA 180

Query: 183 RKVDLSQYHSFDALRATLMNMFDE-----TDSERYKLTYQNVYGDWLLAENLTWR 205
           RKVD+  ++S+++L  +L+ MF E      +   Y  T+Q   GDWLL  ++TW+
Sbjct: 181 RKVDIKLFNSYESLTNSLITMFTEYEDCDREDTNYTFTFQGKEGDWLLRGDVTWK 227

[Close]

BLAST of Clc06G12300 vs. TAIR 10
Match: AT2G33310.1 (auxin-induced protein 13 )

HSP 1 Score: 54.3 bits (129), Expect = 1.6e-07
Identity = 45/172 (26.16%), Postives = 76/172 (44.19%), Query Frame = 0


Query: 58  LLLWNDHPNDGDDDDDSNDPHSASSNDSDEDEERENGLVGWPPLKKRRKSLFMQKRVGRG 117
           LL   D P+ G      +  H+ SS        R + +VGWPP+   R +  +  +  + 
Sbjct: 45  LLTAKDFPSVGSKRAADSASHAGSS------PPRSSQVVGWPPIGSHRMNSLVNNQATKS 104

Query: 118 A-----VIRRRPAVENGGGFYRGLNSN-NSRYVKVKMEGVGIARKVDLSQYHSFDALRAT 177
           A       +++   +      + +N      ++KV M+GV I RKVDL+ + S++ L  T
Sbjct: 105 AREEEEAGKKKVKDDEPKDVTKKVNGKVQVGFIKVNMDGVAIGRKVDLNAHSSYENLAQT 164

Query: 178 LMNMFDETD-------------------SERYKLTYQNVYGDWLLAENLTWR 205
           L +MF  T+                   S  + LTY++  GDW+L  ++ WR
Sbjct: 165 LEDMFFRTNPGTVGLTSQFTKPLRLLDGSSEFVLTYEDKEGDWMLVGDVPWR 210

[Close]

BLAST of Clc06G12300 vs. TAIR 10
Match: AT2G33310.3 (auxin-induced protein 13 )

HSP 1 Score: 54.3 bits (129), Expect = 1.6e-07
Identity = 45/172 (26.16%), Postives = 76/172 (44.19%), Query Frame = 0


Query: 58  LLLWNDHPNDGDDDDDSNDPHSASSNDSDEDEERENGLVGWPPLKKRRKSLFMQKRVGRG 117
           LL   D P+ G      +  H+ SS        R + +VGWPP+   R +  +  +  + 
Sbjct: 45  LLTAKDFPSVGSKRAADSASHAGSS------PPRSSQVVGWPPIGSHRMNSLVNNQATKS 104

Query: 118 A-----VIRRRPAVENGGGFYRGLNSN-NSRYVKVKMEGVGIARKVDLSQYHSFDALRAT 177
           A       +++   +      + +N      ++KV M+GV I RKVDL+ + S++ L  T
Sbjct: 105 AREEEEAGKKKVKDDEPKDVTKKVNGKVQVGFIKVNMDGVAIGRKVDLNAHSSYENLAQT 164

Query: 178 LMNMFDETD-------------------SERYKLTYQNVYGDWLLAENLTWR 205
           L +MF  T+                   S  + LTY++  GDW+L  ++ WR
Sbjct: 165 LEDMFFRTNPGTVGLTSQFTKPLRLLDGSSEFVLTYEDKEGDWMLVGDVPWR 210

[Close]

BLAST of Clc06G12300 vs. TAIR 10
Match: AT1G04550.2 (AUX/IAA transcriptional regulator family protein )

HSP 1 Score: 53.1 bits (126), Expect = 3.5e-07
Identity = 47/177 (26.55%), Postives = 75/177 (42.37%), Query Frame = 0


Query: 58  LLLWNDHPNDGDDDDDSNDPHSASSNDSDEDEERENGLVGWPPLKKRRKSLFMQKRVGRG 117
           +L   D P+ G      +  H  +S        R + +VGWPP+   R +  +  +  + 
Sbjct: 39  ILTAKDFPSVGSKRSAESSSHQGAS------PPRSSQVVGWPPIGLHRMNSLVNNQAMKA 98

Query: 118 AVIRRRPAVENGGGFYRGLNSNNSR--------------YVKVKMEGVGIARKVDLSQYH 177
           A        E G G  + + ++  +              +VKV M+GVGI RKVD+  + 
Sbjct: 99  A------RAEEGDGEKKVVKNDELKDVSMKVNPKVQGLGFVKVNMDGVGIGRKVDMRAHS 158

Query: 178 SFDALRATLMNMF----DETDSERYK------------LTYQNVYGDWLLAENLTWR 205
           S++ L  TL  MF      T  E+ K            LTY++  GDW+L  ++ WR
Sbjct: 159 SYENLAQTLEEMFFGMTGTTCREKVKPLRLLDGSSDFVLTYEDKEGDWMLVGDVPWR 203

[Close]

BLAST of Clc06G12300 vs. TAIR 10
Match: AT2G33310.2 (auxin-induced protein 13 )

HSP 1 Score: 50.8 bits (120), Expect = 1.7e-06
Identity = 44/172 (25.58%), Postives = 75/172 (43.60%), Query Frame = 0


Query: 58  LLLWNDHPNDGDDDDDSNDPHSASSNDSDEDEERENGLVGWPPLKKRRKSLFMQKRVGRG 117
           LL   D P+ G      +  H+ SS      +     +VGWPP+   R +  +  +  + 
Sbjct: 45  LLTAKDFPSVGSKRAADSASHAGSSPPRSSSQ-----VVGWPPIGSHRMNSLVNNQATKS 104

Query: 118 A-----VIRRRPAVENGGGFYRGLNSN-NSRYVKVKMEGVGIARKVDLSQYHSFDALRAT 177
           A       +++   +      + +N      ++KV M+GV I RKVDL+ + S++ L  T
Sbjct: 105 AREEEEAGKKKVKDDEPKDVTKKVNGKVQVGFIKVNMDGVAIGRKVDLNAHSSYENLAQT 164

Query: 178 LMNMFDETD-------------------SERYKLTYQNVYGDWLLAENLTWR 205
           L +MF  T+                   S  + LTY++  GDW+L  ++ WR
Sbjct: 165 LEDMFFRTNPGTVGLTSQFTKPLRLLDGSSEFVLTYEDKEGDWMLVGDVPWR 211

The following BLAST results are available for this feature:

BLAST of Clc06G12300 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038879327.1	1.8e-93	85.71	auxin-responsive protein IAA29-like [Benincasa hispida]	[more]
KGN65132.1	1.5e-84	79.71	hypothetical protein Csa_023489 [Cucumis sativus]	[more]
XP_004150206.2	1.5e-84	79.71	auxin-responsive protein IAA29 [Cucumis sativus]	[more]
XP_008443966.1	2.4e-82	79.43	PREDICTED: auxin-responsive protein IAA29-like [Cucumis melo]	[more]
XP_022987761.1	7.0e-74	72.55	uncharacterized protein LOC111485214 isoform X2 [Cucurbita maxima]	[more]

BLAST of Clc06G12300 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93WC4	5.8e-15	31.06	Auxin-responsive protein IAA29 OS=Arabidopsis thaliana OX=3702 GN=IAA29 PE=1 SV=...	[more]
Q69TU6	4.1e-08	28.19	Auxin-responsive protein IAA22 OS=Oryza sativa subsp. japonica OX=39947 GN=IAA22...	[more]
A2XLV9	5.3e-08	27.97	Auxin-responsive protein IAA13 OS=Oryza sativa subsp. indica OX=39946 GN=IAA13 P...	[more]
Q10D34	5.3e-08	27.97	Auxin-responsive protein IAA13 OS=Oryza sativa subsp. japonica OX=39947 GN=IAA13...	[more]
O24543	6.9e-08	30.07	Auxin-induced protein 22E OS=Vigna radiata var. radiata OX=3916 GN=AUX22E PE=2 S...	[more]

BLAST of Clc06G12300 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LWC5	7.3e-85	79.71	Auxin-responsive protein OS=Cucumis sativus OX=3659 GN=Csa_1G231530 PE=3 SV=1	[more]
A0A1S3B8T8	1.2e-82	79.43	Auxin-responsive protein OS=Cucumis melo OX=3656 GN=LOC103487427 PE=3 SV=1	[more]
A0A6J1JF88	3.4e-74	72.55	Auxin-responsive protein OS=Cucurbita maxima OX=3661 GN=LOC111485214 PE=3 SV=1	[more]
A0A6J1HA19	7.5e-74	72.55	Auxin-responsive protein OS=Cucurbita moschata OX=3662 GN=LOC111461467 PE=3 SV=1	[more]
A0A6J1CTH1	3.6e-60	64.52	Auxin-responsive protein OS=Momordica charantia OX=3673 GN=LOC111014437 PE=3 SV=...	[more]

BLAST of Clc06G12300 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G32280.1	4.2e-16	31.06	indole-3-acetic acid inducible 29	[more]
AT2G33310.1	1.6e-07	26.16	auxin-induced protein 13	[more]
AT2G33310.3	1.6e-07	26.16	auxin-induced protein 13	[more]
AT1G04550.2	3.5e-07	26.55	AUX/IAA transcriptional regulator family protein	[more]
AT2G33310.2	1.7e-06	25.58	auxin-induced protein 13	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR033389	AUX/IAA domain	PFAM	PF02309	AUX_IAA	coord: 74..178 e-value: 8.2E-17 score: 61.9
None	No IPR available	GENE3D	3.10.20.90		coord: 136..210 e-value: 4.0E-15 score: 57.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..98
None	No IPR available	PANTHER	PTHR31734:SF44	AUXIN-RESPONSIVE PROTEIN IAA29	coord: 3..205
None	No IPR available	SUPERFAMILY	54277	CAD & PB1 domains	coord: 134..201
IPR003311	AUX/IAA protein	PANTHER	PTHR31734	AUXIN-RESPONSIVE PROTEIN IAA17	coord: 3..205
IPR000270	PB1 domain	PROSITE	PS51745	PB1	coord: 141..217 score: 13.076891

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc06G12300.2	Clc06G12300.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009734	auxin-activated signaling pathway
biological_process	GO:0006487	protein N-linked glycosylation
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016020	membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003830	beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity
molecular_function	GO:0005515	protein binding