Clc06G12200 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc06G12200
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Methyl-CpG-binding domain-containing protein 11-like
Location	ClcChr06: 22862477 .. 22865229 (+)
RNA-Seq Expression	Clc06G12200
Synteny	Clc06G12200

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCATAAATACTTGTGCATCATTTGATTATCGTTATCCGACTGTGTCCAAGAGGAGACACGTGTCGCTCAACCATAGCGCCGTCATGCTTCCAAGAACACCACCGAAAAACGAAACCCAGATCCGGCCGCTCTCCCTCTCTCTGTCTGTCCTTGTCTCGATGGTGCGAGCAAGAGAAAAAAAAGAAAAAAATGGGAACGAAAAAGAAGAATTTGTTGCTCCATCCATCCAACAGCTTAAATGGGTCCCGAATTCCGACCCCAAAAGCCTCTTTTATTGCTCTTTAGGCGTCACAGGTTCGTATTTCTCATCAATTATCCACAACTGATAGCTTTTGGTTGAAACACAGAGAGGGAGAGACGGCGAGAGCTCTGTCTTTTGCTCCCTTTTTCTTCCTTAGTGGGCATCTCGCTTTTTTCCCTCTTCTCTTTTCGCTACTTTTTGATGAGCTTCTCGATTTTCACTTGATTTGGGAAGTTGCAGAACATGGCGAGCACACTGGAAGAACAGGGGTCTAAAGAGGATGTTCTGTTCTTGGAATTGCCTGCTCCTCCTGGTTGGAACAAAAAGGTTTCCGCCATTTCCGCTTTTTACCTTATATTTTTGTCTCTGCTTTAAATTTCCCCTTCCCCATTTGTTGTGCTGTGAATTTGCCGGGACTTCTGTGTTGGAATTTAAGCTTGACTACCCTTATTTGGAGGTTAGGGCTAATGGGTATCCTTGGAATTAAGCATAGTTCTATAACTCTTATGCTTTGGGGTTAGGGGTTTGGGCTCTTTATCTTTATAGATTCTATAGAAATTATCATTTTGTTTGGTACTCATTAGCCAGTTATCTTTTTGGGGTTTGTTGGAAAAAGTTTGTGTTGTTCTGTCTCTTCTCTTTCATCATCATACTTTCTTTTCCTTGTTTTGGTTATACTTGTTGGAATGCCATAAACCAAACCAGTTATCCGGCACTCCAAATGATCAAGTATGGGGTCTGCTACCAGGTCGATAAGTTGGGAGTACAGGAGTGGCTACCTCCGAAACCTAAGTTGTATTCGTATTTATGTTATTTACATTATTTATGATTTTAGCTCAAGGATTTAAAGGAGTGCACTATATAAACTCAGAAGCTCTTCTCTAAATTCATAATTTGATATTTTTCTCTCTAATAATAAACTGCTCTCTCCTTTTATCCATTGATGTAGCTAACATACGTTAGTGAAGCATGTAAATATTTGTCTCGATTGTCTACTATTAATGTTTTCTATTTATCTTTGGTTGTCGATGTCATAACTATACTTCCTTTTTCTCTCGAGTGAATGGTTCTTTCTAATTGGCAGACCTCATTAGTATGCAACTGTTTGGTTCTTAGGTTAATTATAGTGAGGTTGCCTTGGAAGGTCAGTTGTTATTGAAGATGATTTGATTGATGTTAATGAGTTTTGATTAAGTTGAGATAAAATGAGGTGAAAAAATCTTAGTTTATGTGCAGTTTTTGCCCAAGTTAGATGGCGTCACTAAGAAAAATGAAATCATCTTCATAGCTCCTACGGGGGAGGAGATTCATAGCAAAAGGCAGCTGGATCAATATCTGAAATCACACCCTGGTAATCCAGCACCTTCTAAGTTTGATTGGGGAACTGGTGAAACACCTAGAAGATCAGCTAGAATAAGTGAGAAAGCAAAGGCAACTCCCACCACACCTCAAATTGAACGGCCTAAGAAACGAACACGAAAACGAGCTCTTTCGAAGAAGGATGACGATAAAGAGAAAGATGTTGTCCCATATGGTTTCAAGGAGGCAGTAGTTCATAAGGAAGATGAGACCGATGTCGATGGCAAGGTGAAAGAAACATACGTGGAGGGAAATGATGAAAATAGAAAACCAGAAGATGAGAATGTGAAAGCTGAGACTGTCCCCGCCCCTGCTGAAGTGGCTGAAGAGGGGCGGCGAATTGATGGCAACGAATGGGAGAAGCTTGTTGAAAAGGTGCAGGGAAGTGAGGGTCCTGAAGATGCAAGAAAGGATAATCAAAATTTGGAGGGAACAAAAGGGGAAGAGAAGGTGCAACTTCAAGATGATGCAATGGAATCCATTTCTACTTGTTCAAGTGATAAAGCAGCCATTCCAGAAGAAACAACAGTTGAAGTGCAAAGAAACAACCAAGACAAACTTAACCAAAGTTCTACCATATCAGGAGAAATCAAGGTGGAAGAAGTATTAAAAGAGACTAAAGAGGAACATGATGAAAAGGTAGAAAGTTAACACATTTGGAAGTAGTGATGTGAATTTGTGAAATTGATTTACATGTCTAGTTCAAACCATTTTAAACGAGGAAGATACCAGTGTTCGAACGTCAGTTACCCGATTACCCGGTTCATATGTTGAGATATATCTATGTAATTATCATTTTTAGGAGGATAGTCATTTGTATCTGTTTGTACCATCTTTATATATACATTTAATGTGCAGCAATTTCTGTTACATTTACATTACATGACAGTGTAATTAGAAGTCAGTCTTGTGATGATTTTAGAGTACAACAGTTAGATCTCTCTTTATTGAAGTTGTTAACTTGGAAACCTAAGATCTCTCTTTGCTTCAAAATCTTGAAGTCTCTTTCTTAAAATCCTTCTGAAATTAGCTATCAAAAGTATGGAACATAGCAAATGAAATTTATTCTCTAGAATACCAGCCAAGTGGCAATTCAGAATCTCAAGGAATATTTTAAGAAAAATAAACTGTTGAACTTTAGGGGCAAATTGCA

mRNA sequence

TCATAAATACTTGTGCATCATTTGATTATCGTTATCCGACTGTGTCCAAGAGGAGACACGTGTCGCTCAACCATAGCGCCGTCATGCTTCCAAGAACACCACCGAAAAACGAAACCCAGATCCGGCCGCTCTCCCTCTCTCTGTCTGTCCTTGTCTCGATGGTGCGAGCAAGAGAAAAAAAAGAAAAAAATGGGAACGAAAAAGAAGAATTTGTTGCTCCATCCATCCAACAGCTTAAATGGGTCCCGAATTCCGACCCCAAAAGCCTCTTTTATTGCTCTTTAGGCGTCACAGGTTCGTATTTCTCATCAATTATCCACAACTGATAGCTTTTGGTTGAAACACAGAGAGGGAGAGACGGCGAGAGCTCTGTCTTTTGCTCCCTTTTTCTTCCTTAGTGGGCATCTCGCTTTTTTCCCTCTTCTCTTTTCGCTACTTTTTGATGAGCTTCTCGATTTTCACTTGATTTGGGAAGTTGCAGAACATGGCGAGCACACTGGAAGAACAGGGGTCTAAAGAGGATGTTCTGTTCTTGGAATTGCCTGCTCCTCCTGGTTGGAACAAAAAGTTTTTGCCCAAGTTAGATGGCGTCACTAAGAAAAATGAAATCATCTTCATAGCTCCTACGGGGGAGGAGATTCATAGCAAAAGGCAGCTGGATCAATATCTGAAATCACACCCTGGTAATCCAGCACCTTCTAAGTTTGATTGGGGAACTGGTGAAACACCTAGAAGATCAGCTAGAATAAGTGAGAAAGCAAAGGCAACTCCCACCACACCTCAAATTGAACGGCCTAAGAAACGAACACGAAAACGAGCTCTTTCGAAGAAGGATGACGATAAAGAGAAAGATGTTGTCCCATATGGTTTCAAGGAGGCAGTAGTTCATAAGGAAGATGAGACCGATGTCGATGGCAAGGTGAAAGAAACATACGTGGAGGGAAATGATGAAAATAGAAAACCAGAAGATGAGAATGTGAAAGCTGAGACTGTCCCCGCCCCTGCTGAAGTGGCTGAAGAGGGGCGGCGAATTGATGGCAACGAATGGGAGAAGCTTGTTGAAAAGGTGCAGGGAAGTGAGGGTCCTGAAGATGCAAGAAAGGATAATCAAAATTTGGAGGGAACAAAAGGGGAAGAGAAGGTGCAACTTCAAGATGATGCAATGGAATCCATTTCTACTTGTTCAAGTGATAAAGCAGCCATTCCAGAAGAAACAACAGTTGAAGTGCAAAGAAACAACCAAGACAAACTTAACCAAAGTTCTACCATATCAGGAGAAATCAAGGTGGAAGAAGTATTAAAAGAGACTAAAGAGGAACATGATGAAAAGGTAGAAAGTTAACACATTTGGAAGTAGTGATGTGAATTTGTGAAATTGATTTACATGTCTAGTTCAAACCATTTTAAACGAGGAAGATACCAGTGTTCGAACGTCAGTTACCCGATTACCCGGTTCATATGTTGAGATATATCTATGTAATTATCATTTTTAGGAGGATAGTCATTTGTATCTGTTTGTACCATCTTTATATATACATTTAATGTGCAGCAATTTCTGTTACATTTACATTACATGACAGTGTAATTAGAAGTCAGTCTTGTGATGATTTTAGAGTACAACAGTTAGATCTCTCTTTATTGAAGTTGTTAACTTGGAAACCTAAGATCTCTCTTTGCTTCAAAATCTTGAAGTCTCTTTCTTAAAATCCTTCTGAAATTAGCTATCAAAAGTATGGAACATAGCAAATGAAATTTATTCTCTAGAATACCAGCCAAGTGGCAATTCAGAATCTCAAGGAATATTTTAAGAAAAATAAACTGTTGAACTTTAGGGGCAAATTGCA

Coding sequence (CDS)

ATGGCGAGCACACTGGAAGAACAGGGGTCTAAAGAGGATGTTCTGTTCTTGGAATTGCCTGCTCCTCCTGGTTGGAACAAAAAGTTTTTGCCCAAGTTAGATGGCGTCACTAAGAAAAATGAAATCATCTTCATAGCTCCTACGGGGGAGGAGATTCATAGCAAAAGGCAGCTGGATCAATATCTGAAATCACACCCTGGTAATCCAGCACCTTCTAAGTTTGATTGGGGAACTGGTGAAACACCTAGAAGATCAGCTAGAATAAGTGAGAAAGCAAAGGCAACTCCCACCACACCTCAAATTGAACGGCCTAAGAAACGAACACGAAAACGAGCTCTTTCGAAGAAGGATGACGATAAAGAGAAAGATGTTGTCCCATATGGTTTCAAGGAGGCAGTAGTTCATAAGGAAGATGAGACCGATGTCGATGGCAAGGTGAAAGAAACATACGTGGAGGGAAATGATGAAAATAGAAAACCAGAAGATGAGAATGTGAAAGCTGAGACTGTCCCCGCCCCTGCTGAAGTGGCTGAAGAGGGGCGGCGAATTGATGGCAACGAATGGGAGAAGCTTGTTGAAAAGGTGCAGGGAAGTGAGGGTCCTGAAGATGCAAGAAAGGATAATCAAAATTTGGAGGGAACAAAAGGGGAAGAGAAGGTGCAACTTCAAGATGATGCAATGGAATCCATTTCTACTTGTTCAAGTGATAAAGCAGCCATTCCAGAAGAAACAACAGTTGAAGTGCAAAGAAACAACCAAGACAAACTTAACCAAAGTTCTACCATATCAGGAGAAATCAAGGTGGAAGAAGTATTAAAAGAGACTAAAGAGGAACATGATGAAAAGGTAGAAAGTTAA

Protein sequence

MASTLEEQGSKEDVLFLELPAPPGWNKKFLPKLDGVTKKNEIIFIAPTGEEIHSKRQLDQYLKSHPGNPAPSKFDWGTGETPRRSARISEKAKATPTTPQIERPKKRTRKRALSKKDDDKEKDVVPYGFKEAVVHKEDETDVDGKVKETYVEGNDENRKPEDENVKAETVPAPAEVAEEGRRIDGNEWEKLVEKVQGSEGPEDARKDNQNLEGTKGEEKVQLQDDAMESISTCSSDKAAIPEETTVEVQRNNQDKLNQSSTISGEIKVEEVLKETKEEHDEKVES

Homology

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BLAST of Clc06G12200 vs. NCBI nr
Match: XP_038880161.1 (methyl-CpG-binding domain-containing protein 11-like isoform X2 [Benincasa hispida])

HSP 1 Score: 408.3 bits (1048), Expect = 5.5e-110
Identity = 212/257 (82.49%), Postives = 233/257 (90.66%), Query Frame = 0


Query: 1   MASTLEEQGSKEDVLFLELPAPPGWNKKFLPKLDGVTKKNEIIFIAPTGEEIHSKRQLDQ 60
           MAST E+QGSKEDVLF+ELPAPPGWNKKFLPKLDG+TKKNEIIFIAPTGEEIHSKRQLDQ
Sbjct: 1   MASTWEKQGSKEDVLFVELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEEIHSKRQLDQ 60

Query: 61  YLKSHPGNPAPSKFDWGTGETPRRSARISEKAKATPTTPQIERPKKRTRKRALSKKDDDK 120
           YLKSHPGNPA S+FDWGTGETPRRSARISEKAKA P +PQIERPKKRTRK+ LS+KDD+K
Sbjct: 61  YLKSHPGNPASSEFDWGTGETPRRSARISEKAKAAPPSPQIERPKKRTRKQPLSRKDDNK 120

Query: 121 EKDVVPYGFKEAVVHKEDETDVDGKVKETYVEGNDENRKPEDENVKAETVPAPAEVAEEG 180
           E DVVP GF+E  VHKE+ET+VDGKVK+ YVEGNDEN K ++ENVK ET+P P EVAEEG
Sbjct: 121 EADVVPDGFEEKGVHKENETEVDGKVKKIYVEGNDENSKLKEENVKDETIPTPIEVAEEG 180

Query: 181 RRIDGNEWEKLVEKVQGSEGPEDARKDNQNLEGTKGEEKVQLQDDAMESISTCSSDKAAI 240
           R IDG+E EKL E  Q SEG E+ARK+NQ+LEGTKGEE+VQLQDDA ESISTCS DKAAI
Sbjct: 181 RGIDGDECEKLAETEQASEGSENARKENQSLEGTKGEEEVQLQDDAKESISTCSKDKAAI 240

Query: 241 PEETTVEVQRNNQDKLN 258
           PEETTVEVQRNNQD+LN
Sbjct: 241 PEETTVEVQRNNQDQLN 257

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BLAST of Clc06G12200 vs. NCBI nr
Match: XP_038880160.1 (methyl-CpG-binding domain-containing protein 11-like isoform X1 [Benincasa hispida])

HSP 1 Score: 408.3 bits (1048), Expect = 5.5e-110
Identity = 212/257 (82.49%), Postives = 233/257 (90.66%), Query Frame = 0


Query: 1   MASTLEEQGSKEDVLFLELPAPPGWNKKFLPKLDGVTKKNEIIFIAPTGEEIHSKRQLDQ 60
           MAST E+QGSKEDVLF+ELPAPPGWNKKFLPKLDG+TKKNEIIFIAPTGEEIHSKRQLDQ
Sbjct: 37  MASTWEKQGSKEDVLFVELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEEIHSKRQLDQ 96

Query: 61  YLKSHPGNPAPSKFDWGTGETPRRSARISEKAKATPTTPQIERPKKRTRKRALSKKDDDK 120
           YLKSHPGNPA S+FDWGTGETPRRSARISEKAKA P +PQIERPKKRTRK+ LS+KDD+K
Sbjct: 97  YLKSHPGNPASSEFDWGTGETPRRSARISEKAKAAPPSPQIERPKKRTRKQPLSRKDDNK 156

Query: 121 EKDVVPYGFKEAVVHKEDETDVDGKVKETYVEGNDENRKPEDENVKAETVPAPAEVAEEG 180
           E DVVP GF+E  VHKE+ET+VDGKVK+ YVEGNDEN K ++ENVK ET+P P EVAEEG
Sbjct: 157 EADVVPDGFEEKGVHKENETEVDGKVKKIYVEGNDENSKLKEENVKDETIPTPIEVAEEG 216

Query: 181 RRIDGNEWEKLVEKVQGSEGPEDARKDNQNLEGTKGEEKVQLQDDAMESISTCSSDKAAI 240
           R IDG+E EKL E  Q SEG E+ARK+NQ+LEGTKGEE+VQLQDDA ESISTCS DKAAI
Sbjct: 217 RGIDGDECEKLAETEQASEGSENARKENQSLEGTKGEEEVQLQDDAKESISTCSKDKAAI 276

Query: 241 PEETTVEVQRNNQDKLN 258
           PEETTVEVQRNNQD+LN
Sbjct: 277 PEETTVEVQRNNQDQLN 293

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BLAST of Clc06G12200 vs. NCBI nr
Match: XP_004150031.1 (methyl-CpG-binding domain-containing protein 11 [Cucumis sativus] >KAE8653112.1 hypothetical protein Csa_019891 [Cucumis sativus])

HSP 1 Score: 361.3 bits (926), Expect = 7.6e-96
Identity = 196/257 (76.26%), Postives = 215/257 (83.66%), Query Frame = 0


Query: 1   MASTLEEQGSKEDVLFLELPAPPGWNKKFLPKLDGVTKKNEIIFIAPTGEEIHSKRQLDQ 60
           MASTLE+QGSKE +LFLELPAPPGWNKKFLPKLDG+TKKNEIIFIAPTGE IH+KRQLDQ
Sbjct: 1   MASTLEKQGSKEGILFLELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEAIHNKRQLDQ 60

Query: 61  YLKSHPGNPAPSKFDWGTGETPRRSARISEKAKATPTTPQIERPKKRTRKRALSKKDDDK 120
           YLKSHPGNPA S+FDW TGETPRRSARISEKAKATP +PQIER KKRTRK+ALSKK + K
Sbjct: 61  YLKSHPGNPASSEFDWRTGETPRRSARISEKAKATPPSPQIERRKKRTRKQALSKKVEVK 120

Query: 121 EKDVVPYGFKEAVVHKEDETDVDGKVKETYVEGNDENRKPEDENVKAETVPAPAEVAEEG 180
           E  VVPYG +E  VHKEDET+VD +VKE + E   ENRK EDEN KAET P PAE+AEEG
Sbjct: 121 ETVVVPYGLEEVGVHKEDETNVDSEVKEIHEEEKYENRKLEDENGKAETTPTPAEMAEEG 180

Query: 181 RRIDGNEWEKLVEKVQGSEGPEDARKDNQNLEGTKGEEKVQLQDDAMESISTCSSDKAAI 240
            RIDG+EWEKL +  QGSEG EDARK+NQNLEGT GEEKVQLQ+DA ESIS         
Sbjct: 181 WRIDGDEWEKLAKTKQGSEGSEDARKENQNLEGTNGEEKVQLQNDAKESIS--------- 240

Query: 241 PEETTVEVQRNNQDKLN 258
            EE T EVQRNNQD+L+
Sbjct: 241 -EEITAEVQRNNQDELS 247

[Close]

BLAST of Clc06G12200 vs. NCBI nr
Match: XP_008443980.1 (PREDICTED: methyl-CpG-binding domain-containing protein 11-like [Cucumis melo] >XP_008443981.1 PREDICTED: methyl-CpG-binding domain-containing protein 11-like [Cucumis melo] >KAA0050154.1 methyl-CpG-binding domain-containing protein 11-like [Cucumis melo var. makuwa] >TYK06410.1 methyl-CpG-binding domain-containing protein 11-like [Cucumis melo var. makuwa])

HSP 1 Score: 330.9 bits (847), Expect = 1.1e-86
Identity = 174/217 (80.18%), Postives = 191/217 (88.02%), Query Frame = 0


Query: 1   MASTLEEQGSKEDVLFLELPAPPGWNKKFLPKLDGVTKKNEIIFIAPTGEEIHSKRQLDQ 60
           MASTLE+QGSKEDVLFLELPAPPGWNKKFLPKLDG+TKKNEIIFIAPTGEEIH+KRQLDQ
Sbjct: 1   MASTLEKQGSKEDVLFLELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEEIHNKRQLDQ 60

Query: 61  YLKSHPGNPAPSKFDWGTGETPRRSARISEKAKATPTTPQIERPKKRTRKRALSKKDDDK 120
           YLKSHPGN A S+FDWGTGETPRRSARISEKAKATP +P IERPKKRTRK+AL KK +DK
Sbjct: 61  YLKSHPGNLASSEFDWGTGETPRRSARISEKAKATPPSPHIERPKKRTRKQALLKKFEDK 120

Query: 121 EKDVVPYGFKEAVVHKEDETDVDGKVKETYVEGNDENRKPEDENVKAETVPAPAEVAEEG 180
           E  VVP GF+EA VHKEDET+VD +VKE  VEG  ENRK EDE +KAET P PAE+AEEG
Sbjct: 121 ETVVVPDGFEEAGVHKEDETNVDSEVKEIQVEGKYENRKLEDEKLKAETTPTPAEMAEEG 180

Query: 181 RRIDGNEWEKLVEKVQGSEGPEDARKDNQNLEGTKGE 218
           R+ D +E +KL +  QGSEG EDARK+NQNLEGTKGE
Sbjct: 181 RQSDDDECKKLAKTKQGSEGSEDARKENQNLEGTKGE 217

[Close]

BLAST of Clc06G12200 vs. NCBI nr
Match: XP_022144823.1 (methyl-CpG-binding domain-containing protein 11-like [Momordica charantia])

HSP 1 Score: 290.4 bits (742), Expect = 1.7e-74
Identity = 187/318 (58.81%), Postives = 223/318 (70.13%), Query Frame = 0


Query: 1   MASTLEEQGSKEDVLFLELPAPPGWNKKFLPKLDGVTKKNEIIFIAPTGEEIHSKRQLDQ 60
           MAST++E GS ED+LFLELPAPPGW KKFLPKLDG+TKK EIIF+APTGEEI+ KRQL Q
Sbjct: 18  MASTVKE-GSNEDLLFLELPAPPGWKKKFLPKLDGITKKKEIIFLAPTGEEINGKRQLHQ 77

Query: 61  YLKSHPGNPAPSKFDWGTGETPRRSARISEKAKATPTTPQIERPKKRTRKRALSKKDDDK 120
           YLKSHPGNPA S+FDWGTGETPR+SARISE+ KA P  P+IE PKKRTRK A+SKK DDK
Sbjct: 78  YLKSHPGNPASSEFDWGTGETPRKSARISERVKAAP-LPRIEWPKKRTRKLAVSKK-DDK 137

Query: 121 EKDVVPYGFKEA-VVHKEDETDVDGKVKETYVEGNDENRKPEDENVKAETVPAP----AE 180
           E DVV  G +EA  VHK+D    +  V  T  +GN ENR  +DE+V+    PAP    +E
Sbjct: 138 EADVVLDGSEEARAVHKQDADKYESGV--TDGKGNQENRTLQDEDVETAPAPAPVLASSE 197

Query: 181 VAEEGRRIDGNEWEKLVEKVQGS-------EGPEDARKDNQNLEGTKGEEKVQLQDDAME 240
            AEEG+++DG E E   E   GS       EG EDA K ++NL+GTKGEEKVQLQDDA E
Sbjct: 198 PAEEGQQLDGEECENPAEIEWGSAEGNKETEGSEDATKGSRNLDGTKGEEKVQLQDDAKE 257

Query: 241 SI-------------------STCSSDKAAIPEET--TVEVQRNNQDKLNQSSTISGEIK 286
           +I                   +T   DKAAI +ET  +VEVQ N  ++ N SST SGEIK
Sbjct: 258 TIESEDKESILGEKEFENAKQATSPGDKAAICKETMVSVEVQVNEPNEFNPSSTKSGEIK 317

[Close]

BLAST of Clc06G12200 vs. ExPASy Swiss-Prot
Match: Q9LW00 (Methyl-CpG-binding domain-containing protein 11 OS=Arabidopsis thaliana OX=3702 GN=MBD11 PE=1 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 5.2e-31
Identity = 103/274 (37.59%), Postives = 139/274 (50.73%), Query Frame = 0


Query: 9   GSKEDVLFLELPAPPGWNKKFLPKLDGVTKKNEIIFIAPTGEEIHSKRQLDQYLKSHPGN 68
           G +E+V+ +ELPAP  W K F P   G  KK E++F+APTGEEI +++QL+QYLKSHPGN
Sbjct: 2   GGEEEVVSVELPAPSSWKKLFYPNKVGSVKKTEVVFVAPTGEEISNRKQLEQYLKSHPGN 61

Query: 69  PAPSKFDWGTGETPRRSARISEKAKATPTTPQIERPKKRTR-KRALSKKDDDKEKDV--- 128
           PA ++FDW T  TPRRSARISEK KATP +P  E PKKR R K  +SKKD + EK     
Sbjct: 62  PAIAEFDWTTSGTPRRSARISEKTKATP-SPDKEPPKKRGRTKSPVSKKDAEGEKSEGGG 121

Query: 129 --------VPYGFKEAVVHKEDETDVDGKVKETYVEGNDENRKPEDENVKAETVPAPAEV 188
                         E +   E+ TD +G        G  E      EN+ AE  P  A V
Sbjct: 122 EENSHVKDTEMNPPEGIAENENVTDKNG-------SGETERVNDAKENIVAEETPNAAPV 181

Query: 189 AEEGRRIDGNEWEKLVEKVQGSEGPEDARKDNQNLEGTKGEEKVQLQDDAMESISTCSSD 248
            EEG  +     EK ++ V       D  KD  ++E    +  V ++   +E        
Sbjct: 182 QEEGESMK----EKALDSVDDKSKETDKEKDTGSIE----KNSVDVEKKTVE-------- 241

Query: 249 KAAIPEETTVEVQRNNQDKLNQSSTISGEIKVEE 271
             A  E+   E +  N ++   ++   G+ K  E
Sbjct: 242 --ASDEKKNSEAETRNHEENGLTTEAEGKEKTAE 249

[Close]

BLAST of Clc06G12200 vs. ExPASy Swiss-Prot
Match: Q9XI36 (Methyl-CpG-binding domain-containing protein 10 OS=Arabidopsis thaliana OX=3702 GN=MBD10 PE=1 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.3e-29
Identity = 103/281 (36.65%), Postives = 157/281 (55.87%), Query Frame = 0


Query: 12  EDVLFLELPAPPGWNKKFLPKLDGVTKKNEIIFIAPTGEEIHSKRQLDQYLKSHPGNPAP 71
           ++++ +ELPAP  W K F PK  G  +K EI+F+APTGEEI S++QL+QYLK+HPGNP  
Sbjct: 5   DELVSIELPAPASWKKLFYPKRAGTPRKTEIVFVAPTGEEISSRKQLEQYLKAHPGNPVI 64

Query: 72  SKFDWGTGETPRRSARISEKAKATPTTPQIERPKKRTRKRALSKKDDDK--EKDVVPYGF 131
           S+F+W TGETPRRS+RIS+K KAT  TP  E P  + R+ +L+KKD+ +  EK+      
Sbjct: 65  SEFEWTTGETPRRSSRISQKVKATTPTPDKE-PLLKKRRSSLTKKDNKEAAEKN------ 124

Query: 132 KEAVVHKEDETDVDGKV------KETYVEGNDENRKPEDENVKAETVPAPAEVAEEGRRI 191
           +EA V +  + D DGK       KE   EG  E  + E EN + E   A  +V +EG + 
Sbjct: 125 EEAAVKENMDVDKDGKTENAEAEKEKEKEGVTEIAEAEKENNEGEKTEA-EKVNKEGEKT 184

Query: 192 D-GNEWEKLVEKVQGSEGPEDARKDNQNLEGTKGEEKVQLQDDAMESISTCSSDKAAIPE 251
           + G E +  + + +  +  E A  +N+  E  + ++K  ++ D  E      S + A   
Sbjct: 185 EAGKEGQTEIAEAEKEKEGEKAEAENKEAEVVR-DKKESMEVDTSELEKKAGSGEGA--- 244

Query: 252 ETTVEVQRNNQDKLNQSSTISGEIKVEEVLKETKEEHDEKV 284
           E   +V+     ++ ++  +  E  VE+   E K E+   V
Sbjct: 245 EEPSKVEGLKDTEMKEAQEVVTEADVEKKPAEEKTENKGSV 273

[Close]

BLAST of Clc06G12200 vs. ExPASy TrEMBL
Match: A0A1S3B9A2 (methyl-CpG-binding domain-containing protein 11-like OS=Cucumis melo OX=3656 GN=LOC103487437 PE=4 SV=1)

HSP 1 Score: 330.9 bits (847), Expect = 5.4e-87
Identity = 174/217 (80.18%), Postives = 191/217 (88.02%), Query Frame = 0


Query: 1   MASTLEEQGSKEDVLFLELPAPPGWNKKFLPKLDGVTKKNEIIFIAPTGEEIHSKRQLDQ 60
           MASTLE+QGSKEDVLFLELPAPPGWNKKFLPKLDG+TKKNEIIFIAPTGEEIH+KRQLDQ
Sbjct: 1   MASTLEKQGSKEDVLFLELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEEIHNKRQLDQ 60

Query: 61  YLKSHPGNPAPSKFDWGTGETPRRSARISEKAKATPTTPQIERPKKRTRKRALSKKDDDK 120
           YLKSHPGN A S+FDWGTGETPRRSARISEKAKATP +P IERPKKRTRK+AL KK +DK
Sbjct: 61  YLKSHPGNLASSEFDWGTGETPRRSARISEKAKATPPSPHIERPKKRTRKQALLKKFEDK 120

Query: 121 EKDVVPYGFKEAVVHKEDETDVDGKVKETYVEGNDENRKPEDENVKAETVPAPAEVAEEG 180
           E  VVP GF+EA VHKEDET+VD +VKE  VEG  ENRK EDE +KAET P PAE+AEEG
Sbjct: 121 ETVVVPDGFEEAGVHKEDETNVDSEVKEIQVEGKYENRKLEDEKLKAETTPTPAEMAEEG 180

Query: 181 RRIDGNEWEKLVEKVQGSEGPEDARKDNQNLEGTKGE 218
           R+ D +E +KL +  QGSEG EDARK+NQNLEGTKGE
Sbjct: 181 RQSDDDECKKLAKTKQGSEGSEDARKENQNLEGTKGE 217

[Close]

BLAST of Clc06G12200 vs. ExPASy TrEMBL
Match: A0A5A7U4J5 (Methyl-CpG-binding domain-containing protein 11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold163G001110 PE=4 SV=1)

HSP 1 Score: 330.9 bits (847), Expect = 5.4e-87
Identity = 174/217 (80.18%), Postives = 191/217 (88.02%), Query Frame = 0


Query: 1   MASTLEEQGSKEDVLFLELPAPPGWNKKFLPKLDGVTKKNEIIFIAPTGEEIHSKRQLDQ 60
           MASTLE+QGSKEDVLFLELPAPPGWNKKFLPKLDG+TKKNEIIFIAPTGEEIH+KRQLDQ
Sbjct: 1   MASTLEKQGSKEDVLFLELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEEIHNKRQLDQ 60

Query: 61  YLKSHPGNPAPSKFDWGTGETPRRSARISEKAKATPTTPQIERPKKRTRKRALSKKDDDK 120
           YLKSHPGN A S+FDWGTGETPRRSARISEKAKATP +P IERPKKRTRK+AL KK +DK
Sbjct: 61  YLKSHPGNLASSEFDWGTGETPRRSARISEKAKATPPSPHIERPKKRTRKQALLKKFEDK 120

Query: 121 EKDVVPYGFKEAVVHKEDETDVDGKVKETYVEGNDENRKPEDENVKAETVPAPAEVAEEG 180
           E  VVP GF+EA VHKEDET+VD +VKE  VEG  ENRK EDE +KAET P PAE+AEEG
Sbjct: 121 ETVVVPDGFEEAGVHKEDETNVDSEVKEIQVEGKYENRKLEDEKLKAETTPTPAEMAEEG 180

Query: 181 RRIDGNEWEKLVEKVQGSEGPEDARKDNQNLEGTKGE 218
           R+ D +E +KL +  QGSEG EDARK+NQNLEGTKGE
Sbjct: 181 RQSDDDECKKLAKTKQGSEGSEDARKENQNLEGTKGE 217

[Close]

BLAST of Clc06G12200 vs. ExPASy TrEMBL
Match: A0A6J1CUB2 (methyl-CpG-binding domain-containing protein 11-like OS=Momordica charantia OX=3673 GN=LOC111014413 PE=4 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 8.0e-75
Identity = 187/318 (58.81%), Postives = 223/318 (70.13%), Query Frame = 0


Query: 1   MASTLEEQGSKEDVLFLELPAPPGWNKKFLPKLDGVTKKNEIIFIAPTGEEIHSKRQLDQ 60
           MAST++E GS ED+LFLELPAPPGW KKFLPKLDG+TKK EIIF+APTGEEI+ KRQL Q
Sbjct: 18  MASTVKE-GSNEDLLFLELPAPPGWKKKFLPKLDGITKKKEIIFLAPTGEEINGKRQLHQ 77

Query: 61  YLKSHPGNPAPSKFDWGTGETPRRSARISEKAKATPTTPQIERPKKRTRKRALSKKDDDK 120
           YLKSHPGNPA S+FDWGTGETPR+SARISE+ KA P  P+IE PKKRTRK A+SKK DDK
Sbjct: 78  YLKSHPGNPASSEFDWGTGETPRKSARISERVKAAP-LPRIEWPKKRTRKLAVSKK-DDK 137

Query: 121 EKDVVPYGFKEA-VVHKEDETDVDGKVKETYVEGNDENRKPEDENVKAETVPAP----AE 180
           E DVV  G +EA  VHK+D    +  V  T  +GN ENR  +DE+V+    PAP    +E
Sbjct: 138 EADVVLDGSEEARAVHKQDADKYESGV--TDGKGNQENRTLQDEDVETAPAPAPVLASSE 197

Query: 181 VAEEGRRIDGNEWEKLVEKVQGS-------EGPEDARKDNQNLEGTKGEEKVQLQDDAME 240
            AEEG+++DG E E   E   GS       EG EDA K ++NL+GTKGEEKVQLQDDA E
Sbjct: 198 PAEEGQQLDGEECENPAEIEWGSAEGNKETEGSEDATKGSRNLDGTKGEEKVQLQDDAKE 257

Query: 241 SI-------------------STCSSDKAAIPEET--TVEVQRNNQDKLNQSSTISGEIK 286
           +I                   +T   DKAAI +ET  +VEVQ N  ++ N SST SGEIK
Sbjct: 258 TIESEDKESILGEKEFENAKQATSPGDKAAICKETMVSVEVQVNEPNEFNPSSTKSGEIK 317

[Close]

BLAST of Clc06G12200 vs. ExPASy TrEMBL
Match: A0A7N2L1T6 (MBD domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 1.1e-47
Identity = 141/305 (46.23%), Postives = 188/305 (61.64%), Query Frame = 0


Query: 1   MASTLEEQGSKEDVLFLELPAPPGWNKKFLPKLDGVTKKNEIIFIAPTGEEIHSKRQLDQ 60
           MAS++EE G +E+V+ +ELPAPPGW KKFLPK  G  KKNEIIF +PTGEEI SKRQL+Q
Sbjct: 1   MASSVEEAG-REEVVSVELPAPPGWKKKFLPKQSGTPKKNEIIFTSPTGEEIVSKRQLEQ 60

Query: 61  YLKSHPGNPAPSKFDWGTGETPRRSARISEKAKATPTTPQIERPKKRTRKRALSKKDDDK 120
           YLK+HPG P  S+FDWGTGETPRRSARISEK KATP  P+ E PKKR+RK   S K DDK
Sbjct: 61  YLKAHPGGPTASEFDWGTGETPRRSARISEKTKATP-PPESETPKKRSRKS--SAKKDDK 120

Query: 121 EKDVVPYGFKEA-VVHKED-----ETDVDGKVKETYVEGNDENRKPEDENVKAETVPAPA 180
           EK+  P G +E   VH ED     + +VD K ++  V+ N E+ K +D + K E +P P 
Sbjct: 121 EKETAPEGTEETKEVHMEDAEKSEKDNVDAKTEKVDVKQNQEDNKAQDTDTKTEAIP-PE 180

Query: 181 E-----------VAEEGRRIDGNEWEKLVEKVQG--SEGPEDARKDNQNLEGTKGEEKVQ 240
           E            AEE ++    E E   E + G  +EG +  + +N+ LEG K +EK Q
Sbjct: 181 EGKVGLEGNIPNDAEESKKTSEAELESSKETLVGKEAEGSKVTQNENEKLEGEKVQEKAQ 240

Query: 241 LQD-DAMESISTCSSDK--AAIPEETTVEVQRNNQDKLNQSSTISGEIKVEEVLKETKEE 284
             + +A +   +   DK  AAI  E  +EV+   +++ N+S+ +S     E+ +KE   E
Sbjct: 241 QPECEAEKEDGSGDQDKADAAIAGEKKIEVEGEEKERDNRSTLVSEGEDKEKSVKENDAE 300

[Close]

BLAST of Clc06G12200 vs. ExPASy TrEMBL
Match: A0A6P4BG52 (methyl-CpG-binding domain-containing protein 11-like OS=Ziziphus jujuba OX=326968 GN=LOC107434930 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 8.1e-43
Identity = 144/309 (46.60%), Postives = 180/309 (58.25%), Query Frame = 0


Query: 1   MASTLEEQGSKEDVLFLELPAPPGWNKKFLPKLDGVTKKNEIIFIAPTGEEIHSKRQLDQ 60
           MAS++ ++ +KEDV  LELPAPPGW KKFLPK  G  KKNEIIF APTGEEI ++RQL+Q
Sbjct: 1   MASSVGKEAAKEDVFSLELPAPPGWKKKFLPKQGGTPKKNEIIFTAPTGEEISNRRQLEQ 60

Query: 61  YLKSHPGNPAPSKFDWGTGETPRRSARISEKAKATPTTPQIERPKKRTRKRALSKKDDDK 120
           YLK+HPG PA S+FDWGTGETPRRSARISEKAKATP TP+ E PKKR+RK + SKK D K
Sbjct: 61  YLKAHPGGPAVSEFDWGTGETPRRSARISEKAKATP-TPESEPPKKRSRKSSASKK-DGK 120

Query: 121 EKDVVPYGFKEAVV--------HKEDETDVDGKVKETYVEGNDENRKPEDENVKAETVPA 180
           EK+    G +E+ V         ++D  D D K K+   E  DE  K +D   K E   A
Sbjct: 121 EKEAASGGTEESKVTDIQEDQKTEKDSEDADAK-KDVVKENQDE--KAQDAGTKIEA--A 180

Query: 181 PAEVAEEGRRID-GNEWEKLVEKVQG-SEGPEDARK---------DNQNLEGTKGEEKVQ 240
           PA  A  G+  D  N  EK  E  QG SEG    +K         ++ N E  K  EKV+
Sbjct: 181 PAGEAAAGKESDLPNNSEKATESEQGNSEGITVGKKVEVSGIIQNESGNTEAAKLPEKVE 240

Query: 241 LQDDAMESISTCSSDKAAIPEETTVEVQRN-----NQDKLNQSSTIS-GEIKVEEV--LK 283
            Q D  E           I  +T  + +RN      ++K  + +T S GEI  +E   +K
Sbjct: 241 QQQDETEKNIVAGEQ---IKVDTNADKKRNETEGEEKEKYEKKATESEGEINEKEKHDIK 299

[Close]

BLAST of Clc06G12200 vs. TAIR 10
Match: AT3G15790.1 (methyl-CPG-binding domain 11 )

HSP 1 Score: 136.3 bits (342), Expect = 3.7e-32
Identity = 103/274 (37.59%), Postives = 139/274 (50.73%), Query Frame = 0


Query: 9   GSKEDVLFLELPAPPGWNKKFLPKLDGVTKKNEIIFIAPTGEEIHSKRQLDQYLKSHPGN 68
           G +E+V+ +ELPAP  W K F P   G  KK E++F+APTGEEI +++QL+QYLKSHPGN
Sbjct: 2   GGEEEVVSVELPAPSSWKKLFYPNKVGSVKKTEVVFVAPTGEEISNRKQLEQYLKSHPGN 61

Query: 69  PAPSKFDWGTGETPRRSARISEKAKATPTTPQIERPKKRTR-KRALSKKDDDKEKDV--- 128
           PA ++FDW T  TPRRSARISEK KATP +P  E PKKR R K  +SKKD + EK     
Sbjct: 62  PAIAEFDWTTSGTPRRSARISEKTKATP-SPDKEPPKKRGRTKSPVSKKDAEGEKSEGGG 121

Query: 129 --------VPYGFKEAVVHKEDETDVDGKVKETYVEGNDENRKPEDENVKAETVPAPAEV 188
                         E +   E+ TD +G        G  E      EN+ AE  P  A V
Sbjct: 122 EENSHVKDTEMNPPEGIAENENVTDKNG-------SGETERVNDAKENIVAEETPNAAPV 181

Query: 189 AEEGRRIDGNEWEKLVEKVQGSEGPEDARKDNQNLEGTKGEEKVQLQDDAMESISTCSSD 248
            EEG  +     EK ++ V       D  KD  ++E    +  V ++   +E        
Sbjct: 182 QEEGESMK----EKALDSVDDKSKETDKEKDTGSIE----KNSVDVEKKTVE-------- 241

Query: 249 KAAIPEETTVEVQRNNQDKLNQSSTISGEIKVEE 271
             A  E+   E +  N ++   ++   G+ K  E
Sbjct: 242 --ASDEKKNSEAETRNHEENGLTTEAEGKEKTAE 249

[Close]

BLAST of Clc06G12200 vs. TAIR 10
Match: AT1G15340.1 (methyl-CPG-binding domain 10 )

HSP 1 Score: 131.7 bits (330), Expect = 9.2e-31
Identity = 103/281 (36.65%), Postives = 157/281 (55.87%), Query Frame = 0


Query: 12  EDVLFLELPAPPGWNKKFLPKLDGVTKKNEIIFIAPTGEEIHSKRQLDQYLKSHPGNPAP 71
           ++++ +ELPAP  W K F PK  G  +K EI+F+APTGEEI S++QL+QYLK+HPGNP  
Sbjct: 5   DELVSIELPAPASWKKLFYPKRAGTPRKTEIVFVAPTGEEISSRKQLEQYLKAHPGNPVI 64

Query: 72  SKFDWGTGETPRRSARISEKAKATPTTPQIERPKKRTRKRALSKKDDDK--EKDVVPYGF 131
           S+F+W TGETPRRS+RIS+K KAT  TP  E P  + R+ +L+KKD+ +  EK+      
Sbjct: 65  SEFEWTTGETPRRSSRISQKVKATTPTPDKE-PLLKKRRSSLTKKDNKEAAEKN------ 124

Query: 132 KEAVVHKEDETDVDGKV------KETYVEGNDENRKPEDENVKAETVPAPAEVAEEGRRI 191
           +EA V +  + D DGK       KE   EG  E  + E EN + E   A  +V +EG + 
Sbjct: 125 EEAAVKENMDVDKDGKTENAEAEKEKEKEGVTEIAEAEKENNEGEKTEA-EKVNKEGEKT 184

Query: 192 D-GNEWEKLVEKVQGSEGPEDARKDNQNLEGTKGEEKVQLQDDAMESISTCSSDKAAIPE 251
           + G E +  + + +  +  E A  +N+  E  + ++K  ++ D  E      S + A   
Sbjct: 185 EAGKEGQTEIAEAEKEKEGEKAEAENKEAEVVR-DKKESMEVDTSELEKKAGSGEGA--- 244

Query: 252 ETTVEVQRNNQDKLNQSSTISGEIKVEEVLKETKEEHDEKV 284
           E   +V+     ++ ++  +  E  VE+   E K E+   V
Sbjct: 245 EEPSKVEGLKDTEMKEAQEVVTEADVEKKPAEEKTENKGSV 273

[Close]

BLAST of Clc06G12200 vs. TAIR 10
Match: AT1G15340.2 (methyl-CPG-binding domain 10 )

HSP 1 Score: 65.1 bits (157), Expect = 1.1e-10
Identity = 78/278 (28.06%), Postives = 130/278 (46.76%), Query Frame = 0


Query: 12  EDVLFLELPAPPGWNKKFLPKLDGVTKKNEIIFIAPTGEEIHSKRQLDQYLKSHPGNPAP 71
           ++++ +ELPAP  W K F PK  G  +K EI+F+APTGEEI S++QL+QYLK +    A 
Sbjct: 5   DELVSIELPAPASWKKLFYPKRAGTPRKTEIVFVAPTGEEISSRKQLEQYLKDN--KEAA 64

Query: 72  SKFDWGTGETPRRSARISEKAKATPTTPQIERPKKRTRKRALSKKDDDKEKDVVPYGFKE 131
            K         + +  + +  K      + E+ K+   + A ++K++++ +       + 
Sbjct: 65  EK---NEEAAVKENMDVDKDGKTENAEAEKEKEKEGVTEIAEAEKENNEGEKT-----EA 124

Query: 132 AVVHKEDETDVDGKVKETYV---EGNDENRKPEDENVKAETVPAPAEVAEEGRRIDGNEW 191
             V+KE E    GK  +T +   E   E  K E EN +AE V       +E   +D +E 
Sbjct: 125 EKVNKEGEKTEAGKEGQTEIAEAEKEKEGEKAEAENKEAEVV----RDKKESMEVDTSEL 184

Query: 192 EKLVEKVQGSEGPEDARKDNQNLEGTKGEEKVQLQDDAMESISTCSSDKAAIPEETTVEV 251
           EK     +G+E P         +EG K  E      +A E ++    +K    E+T  + 
Sbjct: 185 EKKAGSGEGAEEP-------SKVEGLKDTE----MKEAQEVVTEADVEKKPAEEKTENKG 244

Query: 252 QRNNQDKLNQSSTISGEIKVEEVLKETK----EEHDEK 283
               +    Q+ T+ GE  ++   +  K    +E+DEK
Sbjct: 245 SVTTEANGEQNVTL-GEPNLDADAEADKGKESKEYDEK 256

The following BLAST results are available for this feature:

BLAST of Clc06G12200 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038880161.1	5.5e-110	82.49	methyl-CpG-binding domain-containing protein 11-like isoform X2 [Benincasa hispi...	[more]
XP_038880160.1	5.5e-110	82.49	methyl-CpG-binding domain-containing protein 11-like isoform X1 [Benincasa hispi...	[more]
XP_004150031.1	7.6e-96	76.26	methyl-CpG-binding domain-containing protein 11 [Cucumis sativus] >KAE8653112.1 ...	[more]
XP_008443980.1	1.1e-86	80.18	PREDICTED: methyl-CpG-binding domain-containing protein 11-like [Cucumis melo] >...	[more]
XP_022144823.1	1.7e-74	58.81	methyl-CpG-binding domain-containing protein 11-like [Momordica charantia]	[more]

BLAST of Clc06G12200 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LW00	5.2e-31	37.59	Methyl-CpG-binding domain-containing protein 11 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q9XI36	1.3e-29	36.65	Methyl-CpG-binding domain-containing protein 10 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Clc06G12200 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B9A2	5.4e-87	80.18	methyl-CpG-binding domain-containing protein 11-like OS=Cucumis melo OX=3656 GN=...	[more]
A0A5A7U4J5	5.4e-87	80.18	Methyl-CpG-binding domain-containing protein 11-like OS=Cucumis melo var. makuwa...	[more]
A0A6J1CUB2	8.0e-75	58.81	methyl-CpG-binding domain-containing protein 11-like OS=Momordica charantia OX=3...	[more]
A0A7N2L1T6	1.1e-47	46.23	MBD domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A6P4BG52	8.1e-43	46.60	methyl-CpG-binding domain-containing protein 11-like OS=Ziziphus jujuba OX=32696...	[more]

BLAST of Clc06G12200 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G15790.1	3.7e-32	37.59	methyl-CPG-binding domain 11	[more]
AT1G15340.1	9.2e-31	36.65	methyl-CPG-binding domain 10	[more]
AT1G15340.2	1.1e-10	28.06	methyl-CPG-binding domain 10	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.890.10		coord: 3..124 e-value: 2.1E-12 score: 49.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 225..262
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 135..262
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 135..168
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..123
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 175..224
IPR001739	Methyl-CpG DNA binding	PFAM	PF01429	MBD	coord: 18..80 e-value: 2.8E-11 score: 43.0
IPR001739	Methyl-CpG DNA binding	PROSITE	PS50982	MBD	coord: 11..81 score: 13.012005
IPR039622	Methyl-CpG-binding domain-containing protein 10/11	PANTHER	PTHR33729	METHYL-CPG BINDING DOMAIN CONTAINING PROTEIN, EXPRESSED	coord: 9..281
IPR016177	DNA-binding domain superfamily	SUPERFAMILY	54171	DNA-binding domain	coord: 12..110

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc06G12200.1	Clc06G12200.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding