Clc06G11790 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc06G11790
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	zinc finger Ran-binding domain-containing protein 2-like
Location	ClcChr06: 22186995 .. 22189372 (+)
RNA-Seq Expression	Clc06G11790
Synteny	Clc06G11790

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGATTCTACAAAGAAAGCTCCCAAATCACTCGCTAAATCCCAATTGGTGCATCCTTTGCAAGAAACCCAATGAAAGCATGGAACATCTCTTCATTTTGTGCAACACAGCCTCCACTATCCGGTCTATTATGGCTTTGGAATTCAGGTGGCATAATAGACATAGCTCAATTGACTCCCTCTGCAAAGAAATGCCCTCGATTAAGCAAGATTCCAAAAAGAAGATTATAATCTTTAATATTTTGATTGCGATTCTTTGGACACTATGGAATGAAATGAACAACCGCATCTTCTCAAAGAAGTAATATCAACCTTTGGGAAGATATTTGCACCCTCACTAGTTTATGGTCACACAGAGCCCGTATTTTTAAAGATTATAGTCCATCAACAATAGTTATCAACCTCAATGCTTTTTGTACCATTTAGTCTTTAGCCCTTTCTATGTATAATTTGATTTCGTAATCTCTTGGTGCTTATTAAATATTTAATGAAATGGAAATGATGAGGGTGCTAAGAAGGTGTCCACCTAGTGGAGATGTTCAGGTGCACCCATAACCCATCGTATCTTTTTTCTAAAAAAAAAAAAAAAAAAAGAAAGTGGGGATTTAAACTTGTGCTCTCAAAATAAAAAAATTGAAAATTTTGGTAGTTCCCCACTTTTAAAGGCTATTCCCACTTTGGCATCTCAAACTCAAACCAAACACTTCCATAAACAAGCTTAACTGCATAATTCTGAAATTATAAAATTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAACCCTAATCTAAAGATAAAGAAAAGAAGAAAAAAAATTCAACTTCGGGAATCGCATCACGAGGAAACCATCCGTGAAAAGGCAAGGGAATAAAAGAGAAACCACCATAAAATGGACCCCAACGCTAAGAGAATTTGGACAACTATATAAACCCCTCGTCCCCCCAGCAAACAAATTCAATAAACTCTCACTTCTAACAAAATTTAAATTCTCTTCCACCAATTCAAATTCACCTATTACCCAACAGAACCATTCATTATTCCATCCATCTTCTTTTCTTCATCAAGGTGAGCATCCTACTTCAACAATCAAACTATATTTTTTTTTTCTTTCTCCCTCTCTGATGGCCTGTGTTATTAGAGAAAAAAAAAAAATTATAGCTTTTAGAATTCAACCTTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTTAGCTATCCATACTAGGCTTTTGGGGGAAAAGGGTATTCAAATTTTAAAGTCCAAGTTTTTTTTTTTTTTTTTTTTTTTTTTTGCACTCCAAAGCTTGAATATGACTGAGTTTTAGCACTTTATTACGCAGTTTTTTATTTGTTTATCTCTCAACTTATGAGTAATGGGATTTTTATATATAGAAGGGAATGAGCTGGTCAGCAGGAGACTGGATATGCAACGTTTGCCAGAACGTAAACTTCAAAAAAAGAGAAGCATGCCATCGTTGTGCTTACCCCAAGTATGGAGGCCCAGACCCTTCAACTTACAGTTACAACAAGACGGAGGCGTTGGCCGGAGACTGGTACTGCACCACCGTCAGCTGCGGAGCTCACAATTATGCCAGCCGTCCCAACTGCTTTAGATGTGGTGCATTTAAGTCCGTCTATCCTGGTGATTATGGCGCCTACATGATCGGTTCCGATCAGTATGGATCTGATGCAAGCATCCCACCTGGATGGAAATCTGGAGACTGGATTTGCCCTAGGTACACACAGAACAATAATAAACTTTACAGTTGAAGTTGTTATTATATGTTCTGAAGTAGGAGCGATTTCATAAAATCACTTCAAGTTGAGAATCACTCCAAAACATATTTGTAATTAATCAAAATTATTTAGATGGTATAAAAATCAAGTTTACAAGAGTAAGAAATCAAACTTTTAACTAAATTTTGAATGATCAAAACATGTTTGGAGTAATTCTGAACATGATATAGAATCTGCACAAATTTACACTTGCTTAGCTAGAGAACTTCAAATTTTCCTTACTCAAAAGATCATACAGAAAACATATGTACGTAAAGTTGGTTAATGTTATTTAAATTCATACCAGCATTAAATATGCTAAATTAATAGTTAATGTTATGTTGTACAGAATGGGATGCGGAGTACATAATTATGCAAGCAGGATGGAGTGTTTTAAATGCAAAACACCAAGAGATTTCGGTAAGTTTATATCAATTAAAAAACATTTACACCTCTGTTTATCTACCCCTCAAAAAGTGGTTAATAAAATTAACCAGTAGATGCGGTTTAATTTGTTTGTTAGTCACTTGGGTGTGTAATACAATTTTGGGTGCTCTATCTTTCAGGTGGTGCAGTTTAA

mRNA sequence

ATGGAGATTCTACAAAGAAAGCTCCCAAATCACTCGCTAAATCCCAATTGGTGCATCCTTTGCAAGAAACCCAATGAAAGCATGGAACATCTCTTCATTTTGTGCAACACAGCCTCCACTATCCGGTCTATTATGGCTTTGGAATTCAGGTGGCATAATAGACATAGCTCAATTGACTCCCTCTGCAAAGAAATGCCCTCGATTAAGCAAGATTCCAAAAAGAAGATTATAATCTTTAATATTTTGATTGCGATTCTTTGGACACTATGGAATGAAATGAACAACCGCATCTTCTCAAAGAAAACCATTCATTATTCCATCCATCTTCTTTTCTTCATCAAGAAGGGAATGAGCTGGTCAGCAGGAGACTGGATATGCAACGTTTGCCAGAACGTAAACTTCAAAAAAAGAGAAGCATGCCATCGTTGTGCTTACCCCAAGTATGGAGGCCCAGACCCTTCAACTTACAGTTACAACAAGACGGAGGCGTTGGCCGGAGACTGGTACTGCACCACCGTCAGCTGCGGAGCTCACAATTATGCCAGCCGTCCCAACTGCTTTAGATGTGGTGCATTTAAGTCCGTCTATCCTGGTGATTATGGCGCCTACATGATCGGTTCCGATCAGTATGGATCTGATGCAAGCATCCCACCTGGATGGAAATCTGGAGACTGGATTTGCCCTAGAATGGGATGCGGAGTACATAATTATGCAAGCAGGATGGAGTGTTTTAAATGCAAAACACCAAGAGATTTCGGTGGTGCAGTTTAA

Coding sequence (CDS)

ATGGAGATTCTACAAAGAAAGCTCCCAAATCACTCGCTAAATCCCAATTGGTGCATCCTTTGCAAGAAACCCAATGAAAGCATGGAACATCTCTTCATTTTGTGCAACACAGCCTCCACTATCCGGTCTATTATGGCTTTGGAATTCAGGTGGCATAATAGACATAGCTCAATTGACTCCCTCTGCAAAGAAATGCCCTCGATTAAGCAAGATTCCAAAAAGAAGATTATAATCTTTAATATTTTGATTGCGATTCTTTGGACACTATGGAATGAAATGAACAACCGCATCTTCTCAAAGAAAACCATTCATTATTCCATCCATCTTCTTTTCTTCATCAAGAAGGGAATGAGCTGGTCAGCAGGAGACTGGATATGCAACGTTTGCCAGAACGTAAACTTCAAAAAAAGAGAAGCATGCCATCGTTGTGCTTACCCCAAGTATGGAGGCCCAGACCCTTCAACTTACAGTTACAACAAGACGGAGGCGTTGGCCGGAGACTGGTACTGCACCACCGTCAGCTGCGGAGCTCACAATTATGCCAGCCGTCCCAACTGCTTTAGATGTGGTGCATTTAAGTCCGTCTATCCTGGTGATTATGGCGCCTACATGATCGGTTCCGATCAGTATGGATCTGATGCAAGCATCCCACCTGGATGGAAATCTGGAGACTGGATTTGCCCTAGAATGGGATGCGGAGTACATAATTATGCAAGCAGGATGGAGTGTTTTAAATGCAAAACACCAAGAGATTTCGGTGGTGCAGTTTAA

Protein sequence

MEILQRKLPNHSLNPNWCILCKKPNESMEHLFILCNTASTIRSIMALEFRWHNRHSSIDSLCKEMPSIKQDSKKKIIIFNILIAILWTLWNEMNNRIFSKKTIHYSIHLLFFIKKGMSWSAGDWICNVCQNVNFKKREACHRCAYPKYGGPDPSTYSYNKTEALAGDWYCTTVSCGAHNYASRPNCFRCGAFKSVYPGDYGAYMIGSDQYGSDASIPPGWKSGDWICPRMGCGVHNYASRMECFKCKTPRDFGGAV

Homology

[Close]

BLAST of Clc06G11790 vs. NCBI nr
Match: XP_008465021.2 (PREDICTED: uncharacterized protein LOC103502740 isoform X2 [Cucumis melo])

HSP 1 Score: 354.0 bits (907), Expect = 1.1e-93
Identity = 151/159 (94.97%), Postives = 155/159 (97.48%), Query Frame = 0


Query: 98  FSKKTIHYSIHLLFFIKKGMSWSAGDWICNVCQNVNFKKREACHRCAYPKYGGPDPSTYS 157
           +  +TIHYSIH +FFIKKGMSWSAGDWICNVCQNVNFKKREACHRC YPKYGGPDPSTYS
Sbjct: 51  YPTRTIHYSIHFIFFIKKGMSWSAGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYS 110

Query: 158 YNKTEALAGDWYCTTVSCGAHNYASRPNCFRCGAFKSVYPGDYGAYMIGSDQYGSDASIP 217
           YNKTEALAGDWYCTTVSCGAHNYASRPNCFRCGAFKSVYPGDYGAYM+GSDQYGSDASIP
Sbjct: 111 YNKTEALAGDWYCTTVSCGAHNYASRPNCFRCGAFKSVYPGDYGAYMMGSDQYGSDASIP 170

Query: 218 PGWKSGDWICPRMGCGVHNYASRMECFKCKTPRDFGGAV 257
           PGWKSGDWICPRMGCGVHNYASRMECFKCKTPRDFGGAV
Sbjct: 171 PGWKSGDWICPRMGCGVHNYASRMECFKCKTPRDFGGAV 209

[Close]

BLAST of Clc06G11790 vs. NCBI nr
Match: XP_008465019.2 (PREDICTED: uncharacterized protein LOC103502740 isoform X1 [Cucumis melo])

HSP 1 Score: 347.8 bits (891), Expect = 7.9e-92
Identity = 148/156 (94.87%), Postives = 152/156 (97.44%), Query Frame = 0


Query: 98  FSKKTIHYSIHLLFFIKKGMSWSAGDWICNVCQNVNFKKREACHRCAYPKYGGPDPSTYS 157
           +  +TIHYSIH +FFIKKGMSWSAGDWICNVCQNVNFKKREACHRC YPKYGGPDPSTYS
Sbjct: 51  YPTRTIHYSIHFIFFIKKGMSWSAGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYS 110

Query: 158 YNKTEALAGDWYCTTVSCGAHNYASRPNCFRCGAFKSVYPGDYGAYMIGSDQYGSDASIP 217
           YNKTEALAGDWYCTTVSCGAHNYASRPNCFRCGAFKSVYPGDYGAYM+GSDQYGSDASIP
Sbjct: 111 YNKTEALAGDWYCTTVSCGAHNYASRPNCFRCGAFKSVYPGDYGAYMMGSDQYGSDASIP 170

Query: 218 PGWKSGDWICPRMGCGVHNYASRMECFKCKTPRDFG 254
           PGWKSGDWICPRMGCGVHNYASRMECFKCKTPRDFG
Sbjct: 171 PGWKSGDWICPRMGCGVHNYASRMECFKCKTPRDFG 206

[Close]

BLAST of Clc06G11790 vs. NCBI nr
Match: XP_008465020.2 (PREDICTED: uncharacterized protein LOC103502740 isoform X3 [Cucumis melo])

HSP 1 Score: 341.3 bits (874), Expect = 7.4e-90
Identity = 147/156 (94.23%), Postives = 151/156 (96.79%), Query Frame = 0


Query: 98  FSKKTIHYSIHLLFFIKKGMSWSAGDWICNVCQNVNFKKREACHRCAYPKYGGPDPSTYS 157
           +  +TIHYSIH +FFI KGMSWSAGDWICNVCQNVNFKKREACHRC YPKYGGPDPSTYS
Sbjct: 51  YPTRTIHYSIHFIFFI-KGMSWSAGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYS 110

Query: 158 YNKTEALAGDWYCTTVSCGAHNYASRPNCFRCGAFKSVYPGDYGAYMIGSDQYGSDASIP 217
           YNKTEALAGDWYCTTVSCGAHNYASRPNCFRCGAFKSVYPGDYGAYM+GSDQYGSDASIP
Sbjct: 111 YNKTEALAGDWYCTTVSCGAHNYASRPNCFRCGAFKSVYPGDYGAYMMGSDQYGSDASIP 170

Query: 218 PGWKSGDWICPRMGCGVHNYASRMECFKCKTPRDFG 254
           PGWKSGDWICPRMGCGVHNYASRMECFKCKTPRDFG
Sbjct: 171 PGWKSGDWICPRMGCGVHNYASRMECFKCKTPRDFG 205

[Close]

BLAST of Clc06G11790 vs. NCBI nr
Match: KAE8653078.1 (hypothetical protein Csa_020050 [Cucumis sativus])

HSP 1 Score: 341.3 bits (874), Expect = 7.4e-90
Identity = 147/156 (94.23%), Postives = 151/156 (96.79%), Query Frame = 0


Query: 98  FSKKTIHYSIHLLFFIKKGMSWSAGDWICNVCQNVNFKKREACHRCAYPKYGGPDPSTYS 157
           +  +TIHYSIH +FFI KGMSWSAGDWICNVCQNVNFKKREACHRC YPKYGGPDPSTYS
Sbjct: 51  YPTRTIHYSIHFIFFI-KGMSWSAGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYS 110

Query: 158 YNKTEALAGDWYCTTVSCGAHNYASRPNCFRCGAFKSVYPGDYGAYMIGSDQYGSDASIP 217
           YNKTEALAGDWYCTTVSCGAHNYASRPNCFRCGAFKSVYPGDYGAYM+GSDQYGSDASIP
Sbjct: 111 YNKTEALAGDWYCTTVSCGAHNYASRPNCFRCGAFKSVYPGDYGAYMMGSDQYGSDASIP 170

Query: 218 PGWKSGDWICPRMGCGVHNYASRMECFKCKTPRDFG 254
           PGWKSGDWICPRMGCGVHNYASRMECFKCKTPRDFG
Sbjct: 171 PGWKSGDWICPRMGCGVHNYASRMECFKCKTPRDFG 205

[Close]

BLAST of Clc06G11790 vs. NCBI nr
Match: XP_004150016.3 (zinc finger Ran-binding domain-containing protein 2 isoform X2 [Cucumis sativus] >KAA0046754.1 zinc finger Ran-binding domain-containing protein 2-like isoform X3 [Cucumis melo var. makuwa] >TYK29693.1 zinc finger Ran-binding domain-containing protein 2-like isoform X3 [Cucumis melo var. makuwa])

HSP 1 Score: 323.9 bits (829), Expect = 1.2e-84
Identity = 138/140 (98.57%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 117 MSWSAGDWICNVCQNVNFKKREACHRCAYPKYGGPDPSTYSYNKTEALAGDWYCTTVSCG 176
           MSWSAGDWICNVCQNVNFKKREACHRC YPKYGGPDPSTYSYNKTEALAGDWYCTTVSCG
Sbjct: 1   MSWSAGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEALAGDWYCTTVSCG 60

Query: 177 AHNYASRPNCFRCGAFKSVYPGDYGAYMIGSDQYGSDASIPPGWKSGDWICPRMGCGVHN 236
           AHNYASRPNCFRCGAFKSVYPGDYGAYM+GSDQYGSDASIPPGWKSGDWICPRMGCGVHN
Sbjct: 61  AHNYASRPNCFRCGAFKSVYPGDYGAYMMGSDQYGSDASIPPGWKSGDWICPRMGCGVHN 120

Query: 237 YASRMECFKCKTPRDFGGAV 257
           YASRMECFKCKTPRDFGGAV
Sbjct: 121 YASRMECFKCKTPRDFGGAV 140

[Close]

BLAST of Clc06G11790 vs. ExPASy Swiss-Prot
Match: O13801 (Uncharacterized RNA-binding protein C17H9.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC17H9.04c PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.6e-07
Identity = 34/130 (26.15%), Postives = 52/130 (40.00%), Query Frame = 0


Query: 122 GDWICNVCQNVNFKKREACHRCAYPKYGGPDPSTYSYN-KTEALAGDWYCTTVSCGAHNY 181
           GDW C +C   NF++R +C RC++P       +T S     +   G+ Y    S    NY
Sbjct: 345 GDWNCPMCGFSNFQRRTSCFRCSFPGPTHVSAATGSNTFSPDFPYGNSYGNGSSHFIANY 404

Query: 182 ASRPNCFRCGAFKSVYPGDYGAYMIGSDQYGSDASIPPGWKSGDWICPRMGCGVHNYASR 241
               +       +S      G   +              +++GDW C   GCG HN+A  
Sbjct: 405 GGSVHHSNENTMQSDLQHQNGNNAVNHHHSSRSFGGNVPFRAGDWKCGSEGCGYHNFAKN 464

Query: 242 MECFKCKTPR 251
           + C +C   R
Sbjct: 465 VCCLRCGASR 474

[Close]

BLAST of Clc06G11790 vs. ExPASy Swiss-Prot
Match: Q5ZLX5 (Zinc finger Ran-binding domain-containing protein 2 OS=Gallus gallus OX=9031 GN=ZRANB2 PE=2 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 1.2e-05
Identity = 31/87 (35.63%), Postives = 40/87 (45.98%), Query Frame = 0


Query: 166 GDWYCTTVSCGAHNYASRPNCFRCGAFKSVYPGDYGAYMIGSDQYGSD-ASIPPG-WKSG 225
           GDW C    CG  N+A R +C RCG  K+    +      G  + G   A    G + + 
Sbjct: 11  GDWICPDKKCGNVNFARRTSCNRCGREKTT---EAKMMKAGGTEIGKTLAEKSRGLFSAN 70

Query: 226 DWICPRMGCGVHNYASRMECFKCKTPR 251
           DW C    CG  N+A R EC  C TP+
Sbjct: 71  DWQCKT--CGNVNWARRSECNMCNTPK 92

[Close]

BLAST of Clc06G11790 vs. ExPASy Swiss-Prot
Match: O95218 (Zinc finger Ran-binding domain-containing protein 2 OS=Homo sapiens OX=9606 GN=ZRANB2 PE=1 SV=2)

HSP 1 Score: 49.7 bits (117), Expect = 5.8e-05
Identity = 30/87 (34.48%), Postives = 39/87 (44.83%), Query Frame = 0


Query: 166 GDWYCTTVSCGAHNYASRPNCFRCGAFKSVYPGDYGAYMIGSDQYGSD-ASIPPG-WKSG 225
           GDW C    CG  N+A R +C RCG  K+    +      G  + G   A    G + + 
Sbjct: 11  GDWICPDKKCGNVNFARRTSCNRCGREKTT---EAKMMKAGGTEIGKTLAEKSRGLFSAN 70

Query: 226 DWICPRMGCGVHNYASRMECFKCKTPR 251
           DW C    C   N+A R EC  C TP+
Sbjct: 71  DWQCKT--CSNVNWARRSECNMCNTPK 92

[Close]

BLAST of Clc06G11790 vs. ExPASy Swiss-Prot
Match: Q9R020 (Zinc finger Ran-binding domain-containing protein 2 OS=Mus musculus OX=10090 GN=Zranb2 PE=1 SV=2)

HSP 1 Score: 49.7 bits (117), Expect = 5.8e-05
Identity = 30/87 (34.48%), Postives = 39/87 (44.83%), Query Frame = 0


Query: 166 GDWYCTTVSCGAHNYASRPNCFRCGAFKSVYPGDYGAYMIGSDQYGSD-ASIPPG-WKSG 225
           GDW C    CG  N+A R +C RCG  K+    +      G  + G   A    G + + 
Sbjct: 11  GDWICPDKKCGNVNFARRTSCNRCGREKTT---EAKMMKAGGTEIGKTLAEKSRGLFSAN 70

Query: 226 DWICPRMGCGVHNYASRMECFKCKTPR 251
           DW C    C   N+A R EC  C TP+
Sbjct: 71  DWQCKT--CSNVNWARRSECNMCNTPK 92

[Close]

BLAST of Clc06G11790 vs. ExPASy Swiss-Prot
Match: Q19QU3 (Zinc finger Ran-binding domain-containing protein 2 OS=Sus scrofa OX=9823 GN=ZRANB2 PE=2 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 5.8e-05
Identity = 30/87 (34.48%), Postives = 39/87 (44.83%), Query Frame = 0


Query: 166 GDWYCTTVSCGAHNYASRPNCFRCGAFKSVYPGDYGAYMIGSDQYGSD-ASIPPG-WKSG 225
           GDW C    CG  N+A R +C RCG  K+    +      G  + G   A    G + + 
Sbjct: 11  GDWICPDKKCGNVNFARRTSCNRCGREKTT---EAKMMKAGGTEIGKTLAEKSRGLFSAN 70

Query: 226 DWICPRMGCGVHNYASRMECFKCKTPR 251
           DW C    C   N+A R EC  C TP+
Sbjct: 71  DWQCKT--CSNVNWARRSECNMCNTPK 92

[Close]

BLAST of Clc06G11790 vs. ExPASy TrEMBL
Match: A0A0A0LWE1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G306810 PE=4 SV=1)

HSP 1 Score: 354.0 bits (907), Expect = 5.3e-94
Identity = 151/159 (94.97%), Postives = 155/159 (97.48%), Query Frame = 0


Query: 98  FSKKTIHYSIHLLFFIKKGMSWSAGDWICNVCQNVNFKKREACHRCAYPKYGGPDPSTYS 157
           +  +TIHYSIH +FFIKKGMSWSAGDWICNVCQNVNFKKREACHRC YPKYGGPDPSTYS
Sbjct: 51  YPTRTIHYSIHFIFFIKKGMSWSAGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYS 110

Query: 158 YNKTEALAGDWYCTTVSCGAHNYASRPNCFRCGAFKSVYPGDYGAYMIGSDQYGSDASIP 217
           YNKTEALAGDWYCTTVSCGAHNYASRPNCFRCGAFKSVYPGDYGAYM+GSDQYGSDASIP
Sbjct: 111 YNKTEALAGDWYCTTVSCGAHNYASRPNCFRCGAFKSVYPGDYGAYMMGSDQYGSDASIP 170

Query: 218 PGWKSGDWICPRMGCGVHNYASRMECFKCKTPRDFGGAV 257
           PGWKSGDWICPRMGCGVHNYASRMECFKCKTPRDFGGAV
Sbjct: 171 PGWKSGDWICPRMGCGVHNYASRMECFKCKTPRDFGGAV 209

[Close]

BLAST of Clc06G11790 vs. ExPASy TrEMBL
Match: A0A1S3CMY6 (uncharacterized protein LOC103502740 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103502740 PE=4 SV=1)

HSP 1 Score: 354.0 bits (907), Expect = 5.3e-94
Identity = 151/159 (94.97%), Postives = 155/159 (97.48%), Query Frame = 0


Query: 98  FSKKTIHYSIHLLFFIKKGMSWSAGDWICNVCQNVNFKKREACHRCAYPKYGGPDPSTYS 157
           +  +TIHYSIH +FFIKKGMSWSAGDWICNVCQNVNFKKREACHRC YPKYGGPDPSTYS
Sbjct: 51  YPTRTIHYSIHFIFFIKKGMSWSAGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYS 110

Query: 158 YNKTEALAGDWYCTTVSCGAHNYASRPNCFRCGAFKSVYPGDYGAYMIGSDQYGSDASIP 217
           YNKTEALAGDWYCTTVSCGAHNYASRPNCFRCGAFKSVYPGDYGAYM+GSDQYGSDASIP
Sbjct: 111 YNKTEALAGDWYCTTVSCGAHNYASRPNCFRCGAFKSVYPGDYGAYMMGSDQYGSDASIP 170

Query: 218 PGWKSGDWICPRMGCGVHNYASRMECFKCKTPRDFGGAV 257
           PGWKSGDWICPRMGCGVHNYASRMECFKCKTPRDFGGAV
Sbjct: 171 PGWKSGDWICPRMGCGVHNYASRMECFKCKTPRDFGGAV 209

[Close]

BLAST of Clc06G11790 vs. ExPASy TrEMBL
Match: A0A1S3CNB1 (uncharacterized protein LOC103502740 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502740 PE=4 SV=1)

HSP 1 Score: 347.8 bits (891), Expect = 3.8e-92
Identity = 148/156 (94.87%), Postives = 152/156 (97.44%), Query Frame = 0


Query: 98  FSKKTIHYSIHLLFFIKKGMSWSAGDWICNVCQNVNFKKREACHRCAYPKYGGPDPSTYS 157
           +  +TIHYSIH +FFIKKGMSWSAGDWICNVCQNVNFKKREACHRC YPKYGGPDPSTYS
Sbjct: 51  YPTRTIHYSIHFIFFIKKGMSWSAGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYS 110

Query: 158 YNKTEALAGDWYCTTVSCGAHNYASRPNCFRCGAFKSVYPGDYGAYMIGSDQYGSDASIP 217
           YNKTEALAGDWYCTTVSCGAHNYASRPNCFRCGAFKSVYPGDYGAYM+GSDQYGSDASIP
Sbjct: 111 YNKTEALAGDWYCTTVSCGAHNYASRPNCFRCGAFKSVYPGDYGAYMMGSDQYGSDASIP 170

Query: 218 PGWKSGDWICPRMGCGVHNYASRMECFKCKTPRDFG 254
           PGWKSGDWICPRMGCGVHNYASRMECFKCKTPRDFG
Sbjct: 171 PGWKSGDWICPRMGCGVHNYASRMECFKCKTPRDFG 206

[Close]

BLAST of Clc06G11790 vs. ExPASy TrEMBL
Match: A0A1S3CPF6 (uncharacterized protein LOC103502740 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103502740 PE=4 SV=1)

HSP 1 Score: 341.3 bits (874), Expect = 3.6e-90
Identity = 147/156 (94.23%), Postives = 151/156 (96.79%), Query Frame = 0


Query: 98  FSKKTIHYSIHLLFFIKKGMSWSAGDWICNVCQNVNFKKREACHRCAYPKYGGPDPSTYS 157
           +  +TIHYSIH +FFI KGMSWSAGDWICNVCQNVNFKKREACHRC YPKYGGPDPSTYS
Sbjct: 51  YPTRTIHYSIHFIFFI-KGMSWSAGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYS 110

Query: 158 YNKTEALAGDWYCTTVSCGAHNYASRPNCFRCGAFKSVYPGDYGAYMIGSDQYGSDASIP 217
           YNKTEALAGDWYCTTVSCGAHNYASRPNCFRCGAFKSVYPGDYGAYM+GSDQYGSDASIP
Sbjct: 111 YNKTEALAGDWYCTTVSCGAHNYASRPNCFRCGAFKSVYPGDYGAYMMGSDQYGSDASIP 170

Query: 218 PGWKSGDWICPRMGCGVHNYASRMECFKCKTPRDFG 254
           PGWKSGDWICPRMGCGVHNYASRMECFKCKTPRDFG
Sbjct: 171 PGWKSGDWICPRMGCGVHNYASRMECFKCKTPRDFG 205

[Close]

BLAST of Clc06G11790 vs. ExPASy TrEMBL
Match: A0A5D3E0T0 (Zinc finger Ran-binding domain-containing protein 2-like isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold64G00450 PE=4 SV=1)

HSP 1 Score: 323.9 bits (829), Expect = 5.9e-85
Identity = 138/140 (98.57%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 117 MSWSAGDWICNVCQNVNFKKREACHRCAYPKYGGPDPSTYSYNKTEALAGDWYCTTVSCG 176
           MSWSAGDWICNVCQNVNFKKREACHRC YPKYGGPDPSTYSYNKTEALAGDWYCTTVSCG
Sbjct: 1   MSWSAGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEALAGDWYCTTVSCG 60

Query: 177 AHNYASRPNCFRCGAFKSVYPGDYGAYMIGSDQYGSDASIPPGWKSGDWICPRMGCGVHN 236
           AHNYASRPNCFRCGAFKSVYPGDYGAYM+GSDQYGSDASIPPGWKSGDWICPRMGCGVHN
Sbjct: 61  AHNYASRPNCFRCGAFKSVYPGDYGAYMMGSDQYGSDASIPPGWKSGDWICPRMGCGVHN 120

Query: 237 YASRMECFKCKTPRDFGGAV 257
           YASRMECFKCKTPRDFGGAV
Sbjct: 121 YASRMECFKCKTPRDFGGAV 140

[Close]

BLAST of Clc06G11790 vs. TAIR 10
Match: AT2G26695.1 (Ran BP2/NZF zinc finger-like superfamily protein )

HSP 1 Score: 219.5 bits (558), Expect = 3.0e-57
Identity = 90/140 (64.29%), Postives = 110/140 (78.57%), Query Frame = 0


Query: 117 MSWSAGDWICNVCQNVNFKKREACHRCAYPKYGGPDPSTYSYNKTEALAGDWYCTTVSCG 176
           MSW+ GDW+C  CQ+ NFKKRE+C +C YPK+GG D STY YN+TE +AGDWYC  ++CG
Sbjct: 1   MSWTGGDWLCGACQHANFKKRESCQKCGYPKFGGVDVSTYLYNRTEVMAGDWYCGALNCG 60

Query: 177 AHNYASRPNCFRCGAFKSVYPGD-YGAYMIGSDQYGSD-ASIPPGWKSGDWICPRMGCGV 236
           +HNYASR +C+RCG  K  Y    YGA M+    YG+D A+ PPGWK+GDW+CPR+GCGV
Sbjct: 61  SHNYASRTSCYRCGMIKVEYTEQYYGAQMVA---YGNDGAACPPGWKTGDWVCPRVGCGV 120

Query: 237 HNYASRMECFKCKTPRDFGG 255
           HNYASR ECFKCKT RD+GG
Sbjct: 121 HNYASRAECFKCKTTRDYGG 137

[Close]

BLAST of Clc06G11790 vs. TAIR 10
Match: AT3G15680.1 (Ran BP2/NZF zinc finger-like superfamily protein )

HSP 1 Score: 137.9 bits (346), Expect = 1.2e-32
Identity = 65/154 (42.21%), Postives = 86/154 (55.84%), Query Frame = 0


Query: 122 GDWICNVCQNVNFKKREACHRCA-------------YPKYGGPDPSTYSYNK-TEALAGD 181
           GDW C  C ++NF++R++C RC              +  +GG   S + +   ++   GD
Sbjct: 5   GDWNCRSCSHLNFQRRDSCQRCGDSRSGPGGVGGLDFGNFGGRAMSAFGFTTGSDVRPGD 64

Query: 182 WYCTTVSCGAHNYASRPNCFRCGAFK-SVYPGDYGAYMIGSDQYGSD--ASIPPG----- 241
           WYCT  +CG HN+ASR  CF+CG FK     G  G  + G   + +D   S  PG     
Sbjct: 65  WYCTVGNCGTHNFASRSTCFKCGTFKDETGAGGGGGGIGGPAMFDADIMRSRVPGNGGRS 124

Query: 242 -WKSGDWICPRMGCGVHNYASRMECFKCKTPRDF 253
            WKSGDWIC R+GC  HN+ASRMECF+C  PRDF
Sbjct: 125 SWKSGDWICTRIGCNEHNFASRMECFRCNAPRDF 158

[Close]

BLAST of Clc06G11790 vs. TAIR 10
Match: AT5G25490.1 (Ran BP2/NZF zinc finger-like superfamily protein )

HSP 1 Score: 132.1 bits (331), Expect = 6.3e-31
Identity = 59/159 (37.11%), Postives = 82/159 (51.57%), Query Frame = 0


Query: 122 GDWICNVCQNVNFKKREACHRCAYPKYGG------------PDPSTYSYNK-TEALAGDW 181
           GDW C +C ++NF++R++C RC  P+ GG            P  S++ +N   +   GDW
Sbjct: 5   GDWNCRLCSHLNFQRRDSCQRCREPRPGGISTDLLSGFGGRPVSSSFGFNTGPDVRPGDW 64

Query: 182 YCTTVSCGAHNYASRPNCFRCGAFKSVYPGD----------------YGAYMIGSDQYGS 241
           YC    CG HN+A+R +CF+CGA K  +                    G +  G    G 
Sbjct: 65  YCNLGDCGTHNFANRSSCFKCGAAKDEFSCSSAAATTGFMDMNVGPRRGLFGFGGSSSGG 124

Query: 242 DASIPPGWKSGDWICPRMGCGVHNYASRMECFKCKTPRD 252
             +    WKSGDWICPR GC  HN+ASR ECF+C  P++
Sbjct: 125 GGTGRSPWKSGDWICPRSGCNEHNFASRSECFRCNAPKE 163

[Close]

BLAST of Clc06G11790 vs. TAIR 10
Match: AT2G17975.1 (zinc finger (Ran-binding) family protein )

HSP 1 Score: 89.7 bits (221), Expect = 3.6e-18
Identity = 53/149 (35.57%), Postives = 69/149 (46.31%), Query Frame = 0


Query: 122 GDWICNVCQNVNFKKREACHRCAYPKYGGPDPSTYSYNKTEALAGDWYCTTVSCGAHNYA 181
           GDW C  C+N N+  R  C+RC  P+    D +T   +K     GDW CT   C  +NYA
Sbjct: 7   GDWECLGCRNRNYAFRSFCNRCKQPRL-IMDNNTSPNSKWLPRIGDWICT--GCTNNNYA 66

Query: 182 SRPNCFRCGAFKSV-------YPG-----------------DYGAYMIGSDQYGSDASIP 241
           SR  C +CG  K V        PG                 D    ++      + AS+ 
Sbjct: 67  SREKCKKCGQSKEVAALSALAIPGASLQTHLHYFTRGPESHDQPGSLLAFSNATNQASVH 126

Query: 242 PGWKSGDWICPRMGCGVHNYASRMECFKC 247
             W+SGDWIC    CG HNY+SR++C KC
Sbjct: 127 KEWRSGDWIC---RCGFHNYSSRIQCKKC 149

[Close]

BLAST of Clc06G11790 vs. TAIR 10
Match: AT1G70650.1 (Ran BP2/NZF zinc finger-like superfamily protein )

HSP 1 Score: 42.7 bits (99), Expect = 5.0e-04
Identity = 23/83 (27.71%), Postives = 34/83 (40.96%), Query Frame = 0


Query: 122 GDWICNVCQNVNFKKREACHRC-AYPKYGGPDPSTYSYNKTEALAGDWYCTTVSCGAHNY 181
           GDW C  C+ +NF K   C RC  + +           +      GDW C T  C   N+
Sbjct: 236 GDWYCTECKFLNFAKNIRCLRCDVFSEERLKQLKEEQKDHLPLKKGDWICQT--CNFLNF 295

Query: 182 ASRPNCFRC---GAFKSVYPGDY 201
           +    C RC      + + PG++
Sbjct: 296 SKNTRCLRCKDKPTLRQINPGEW 316

The following BLAST results are available for this feature:

BLAST of Clc06G11790 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008465021.2	1.1e-93	94.97	PREDICTED: uncharacterized protein LOC103502740 isoform X2 [Cucumis melo]	[more]
XP_008465019.2	7.9e-92	94.87	PREDICTED: uncharacterized protein LOC103502740 isoform X1 [Cucumis melo]	[more]
XP_008465020.2	7.4e-90	94.23	PREDICTED: uncharacterized protein LOC103502740 isoform X3 [Cucumis melo]	[more]
KAE8653078.1	7.4e-90	94.23	hypothetical protein Csa_020050 [Cucumis sativus]	[more]
XP_004150016.3	1.2e-84	98.57	zinc finger Ran-binding domain-containing protein 2 isoform X2 [Cucumis sativus]...	[more]

BLAST of Clc06G11790 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O13801	3.6e-07	26.15	Uncharacterized RNA-binding protein C17H9.04c OS=Schizosaccharomyces pombe (stra...	[more]
Q5ZLX5	1.2e-05	35.63	Zinc finger Ran-binding domain-containing protein 2 OS=Gallus gallus OX=9031 GN=...	[more]
O95218	5.8e-05	34.48	Zinc finger Ran-binding domain-containing protein 2 OS=Homo sapiens OX=9606 GN=Z...	[more]
Q9R020	5.8e-05	34.48	Zinc finger Ran-binding domain-containing protein 2 OS=Mus musculus OX=10090 GN=...	[more]
Q19QU3	5.8e-05	34.48	Zinc finger Ran-binding domain-containing protein 2 OS=Sus scrofa OX=9823 GN=ZRA...	[more]

BLAST of Clc06G11790 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LWE1	5.3e-94	94.97	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G306810 PE=4 SV=1	[more]
A0A1S3CMY6	5.3e-94	94.97	uncharacterized protein LOC103502740 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S3CNB1	3.8e-92	94.87	uncharacterized protein LOC103502740 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S3CPF6	3.6e-90	94.23	uncharacterized protein LOC103502740 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A5D3E0T0	5.9e-85	98.57	Zinc finger Ran-binding domain-containing protein 2-like isoform X3 OS=Cucumis m...	[more]

BLAST of Clc06G11790 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G26695.1	3.0e-57	64.29	Ran BP2/NZF zinc finger-like superfamily protein	[more]
AT3G15680.1	1.2e-32	42.21	Ran BP2/NZF zinc finger-like superfamily protein	[more]
AT5G25490.1	6.3e-31	37.11	Ran BP2/NZF zinc finger-like superfamily protein	[more]
AT2G17975.1	3.6e-18	35.57	zinc finger (Ran-binding) family protein	[more]
AT1G70650.1	5.0e-04	27.71	Ran BP2/NZF zinc finger-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001876	Zinc finger, RanBP2-type	SMART	SM00547	zf_4	coord: 166..192 e-value: 1.3E-4 score: 31.3 coord: 223..249 e-value: 2.7E-8 score: 43.6 coord: 122..146 e-value: 1.8E-4 score: 30.9
IPR001876	Zinc finger, RanBP2-type	PFAM	PF00641	zf-RanBP	coord: 120..147 e-value: 5.3E-6 score: 25.6 coord: 165..193 e-value: 1.7E-6 score: 27.2 coord: 221..250 e-value: 1.2E-8 score: 34.1
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS01358	ZF_RANBP2_1	coord: 225..246
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS01358	ZF_RANBP2_1	coord: 124..143
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS01358	ZF_RANBP2_1	coord: 168..189
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS50199	ZF_RANBP2_2	coord: 164..195 score: 9.145193
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS50199	ZF_RANBP2_2	coord: 120..149 score: 9.066148
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS50199	ZF_RANBP2_2	coord: 221..252 score: 10.138906
None	No IPR available	GENE3D	4.10.1060.10		coord: 156..195 e-value: 1.8E-10 score: 41.9 coord: 216..252 e-value: 5.7E-13 score: 49.9 coord: 113..151 e-value: 1.3E-10 score: 42.4
None	No IPR available	PANTHER	PTHR23111:SF41	ZINC FINGER, RANBP2-TYPE-RELATED	coord: 95..253
None	No IPR available	PANTHER	PTHR23111	ZINC FINGER PROTEIN	coord: 95..253
IPR036443	Zinc finger, RanBP2-type superfamily	SUPERFAMILY	90209	Ran binding protein zinc finger-like	coord: 217..252
IPR036443	Zinc finger, RanBP2-type superfamily	SUPERFAMILY	90209	Ran binding protein zinc finger-like	coord: 162..194
IPR036443	Zinc finger, RanBP2-type superfamily	SUPERFAMILY	90209	Ran binding protein zinc finger-like	coord: 115..150

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc06G11790.1	Clc06G11790.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding