Clc06G11430 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CTTGAATTCGTTTTAGTGTGCGTGTGTTTCTTGTCGTGTATGACCCATTCTTCTGGAAGTCTTGGATTCCAAATTTTTGCAGATATAAACAGGGAAGAACGACGACTTTGACGAGAAAGGAGGAAACAAAGAGAGTGAGCAAGAAATCGACCAAATTCATCAAAGAGACCAATAAAAAAGATGAGGAATAGTTCGAGGACTTACAACCGGAAGTAGACATAAGGGAGACCCCTGAGTGCATGTTAAGGCAGCTATCTGAGCCTGACATGACCCAGCAGCCTCTGTGCATAGTCTACCCTGCCACCATCATACCATTTGAGGTTAAGACAAGCCTGATTCATCTGTTGCCTCAGTTTATTGGCAGGGCAGGGGAAGACCCTCACAAACACTTAAAGGACTTTCATGTTGTTTGTGAAGATATGAGGCCCCATGGGGTCACAGAGGAACAACTAAATCTGAGAGCATTTTCCTTTTCTCTGAAGGAGGATGTAAAAGATCAGCTCTACTACCAGCCCCCTGGTTTGATCACTACATGGAACAGGATGAAGAAGTTGTTTCTTGATAAATATTTTTCAGCTCCAAAGGCTAACAACATCAAAAAGGAGATTTATGGCATAACCTAGAGGGTTAGGGAGACATTGTTCGATTATTGGGAAAGATAGAAGTAGCTCTGAGAACTTGTAAAAATACAATTTATTATAGTATGTAGAGAATTTA CTTGAATTCGTTTTAGTGTGCGTGTGTTTCTTGTCGTGTATGACCCATTCTTCTGGAAGTCTTGGATTCCAAATTTTTGCAGATATAAACAGGGAAGAACGACGACTTTGACGAGAAAGGAGGAAACAAAGAGAGTGAGCAAGAAATCGACCAAATTCATCAAAGAGACCAATAAAAAAGATGAGGAATAGTTCGAGGACTTACAACCGGAAGTAGACATAAGGGAGACCCCTGAGTGCATGTTAAGGCAGCTATCTGAGCCTGACATGACCCAGCAGCCTCTGTGCATAGTCTACCCTGCCACCATCATACCATTTGAGGTTAAGACAAGCCTGATTCATCTGTTGCCTCAGTTTATTGGCAGGGCAGGGGAAGACCCTCACAAACACTTAAAGGACTTTCATGTTGTTTGTGAAGATATGAGGCCCCATGGGGTCACAGAGGAACAACTAAATCTGAGAGCATTTTCCTTTTCTCTGAAGGAGGATGTAAAAGATCAGCTCTACTACCAGCCCCCTGGTTTGATCACTACATGGAACAGGATGAAGAAGTTGTTTCTTGATAAATATTTTTCAGCTCCAAAGGCTAACAACATCAAAAAGGAGATTTATGGCATAACCTAGAGGGTTAGGGAGACATTGTTCGATTATTGGGAAAGATAGAAGTAGCTCTGAGAACTTGTAAAAATACAATTTATTATAGTATGTAGAGAATTTA ATGTTAAGGCAGCTATCTGAGCCTGACATGACCCAGCAGCCTCTGTGCATAGTCTACCCTGCCACCATCATACCATTTGAGGTTAAGACAAGCCTGATTCATCTGTTGCCTCAGTTTATTGGCAGGGCAGGGGAAGACCCTCACAAACACTTAAAGGACTTTCATGTTGTTTGTGAAGATATGAGGCCCCATGGGGTCACAGAGGAACAACTAAATCTGAGAGCATTTTCCTTTTCTCTGAAGGAGGATGTAAAAGATCAGCTCTACTACCAGCCCCCTGGTTTGATCACTACATGGAACAGGATGAAGAAGTTGTTTCTTGATAAATATTTTTCAGCTCCAAAGGCTAACAACATCAAAAAGGAGATTTATGGCATAACCTAG MLRQLSEPDMTQQPLCIVYPATIIPFEVKTSLIHLLPQFIGRAGEDPHKHLKDFHVVCEDMRPHGVTEEQLNLRAFSFSLKEDVKDQLYYQPPGLITTWNRMKKLFLDKYFSAPKANNIKKEIYGIT Homology
BLAST of Clc06G11430 vs. NCBI nr
Match: XP_022156327.1 (uncharacterized protein LOC111023248 [Momordica charantia]) HSP 1 Score: 183.0 bits (463), Expect = 1.7e-42 Identity = 83/126 (65.87%), Postives = 100/126 (79.37%), Query Frame = 0
BLAST of Clc06G11430 vs. NCBI nr
Match: XP_024041424.1 (uncharacterized protein LOC112098931 [Citrus clementina]) HSP 1 Score: 175.6 bits (444), Expect = 2.7e-40 Identity = 82/125 (65.60%), Postives = 97/125 (77.60%), Query Frame = 0
BLAST of Clc06G11430 vs. NCBI nr
Match: XP_024036911.1 (uncharacterized protein LOC112096919 [Citrus clementina]) HSP 1 Score: 175.6 bits (444), Expect = 2.7e-40 Identity = 82/125 (65.60%), Postives = 97/125 (77.60%), Query Frame = 0
BLAST of Clc06G11430 vs. NCBI nr
Match: XP_024956556.1 (uncharacterized protein LOC102619730 [Citrus sinensis]) HSP 1 Score: 174.9 bits (442), Expect = 4.5e-40 Identity = 81/125 (64.80%), Postives = 95/125 (76.00%), Query Frame = 0
BLAST of Clc06G11430 vs. NCBI nr
Match: XP_031272254.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC116130670 [Pistacia vera]) HSP 1 Score: 173.7 bits (439), Expect = 1.0e-39 Identity = 77/125 (61.60%), Postives = 96/125 (76.80%), Query Frame = 0
BLAST of Clc06G11430 vs. ExPASy TrEMBL
Match: A0A6J1DRS5 (uncharacterized protein LOC111023248 OS=Momordica charantia OX=3673 GN=LOC111023248 PE=4 SV=1) HSP 1 Score: 183.0 bits (463), Expect = 8.0e-43 Identity = 83/126 (65.87%), Postives = 100/126 (79.37%), Query Frame = 0
BLAST of Clc06G11430 vs. ExPASy TrEMBL
Match: A0A5A7SRF5 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G00500 PE=4 SV=1) HSP 1 Score: 172.9 bits (437), Expect = 8.3e-40 Identity = 80/125 (64.00%), Postives = 95/125 (76.00%), Query Frame = 0
BLAST of Clc06G11430 vs. ExPASy TrEMBL
Match: A0A5A7USL5 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G004630 PE=4 SV=1) HSP 1 Score: 172.2 bits (435), Expect = 1.4e-39 Identity = 79/126 (62.70%), Postives = 97/126 (76.98%), Query Frame = 0
BLAST of Clc06G11430 vs. ExPASy TrEMBL
Match: A0A2G9G7U9 (DNA-directed DNA polymerase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_26122 PE=4 SV=1) HSP 1 Score: 171.8 bits (434), Expect = 1.9e-39 Identity = 76/125 (60.80%), Postives = 94/125 (75.20%), Query Frame = 0
BLAST of Clc06G11430 vs. ExPASy TrEMBL
Match: A0A5A7TXC8 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1096G00170 PE=4 SV=1) HSP 1 Score: 171.4 bits (433), Expect = 2.4e-39 Identity = 79/125 (63.20%), Postives = 96/125 (76.80%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
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