Clc06G10908 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc06G10908
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Acetohydroxy-acid synthase small subunit
Location	ClcChr06: 18616452 .. 18616967 (-)
RNA-Seq Expression	Clc06G10908
Synteny	Clc06G10908

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAAATGCTATAGAGGTGGAAAGTTGTAATGTTCATGGTTCGCCTTACTGTATTTGGTTTGAAGAAGGTTCTTTCCATTTTGAGGACGTGGAAGCCAAAGAAACTCTACCGTTGTCAAACTCCCATTTGAGATGGTTTATCAAATCCATATTAGAACTGCTCCAAGGCCCTCCCAATAGGTACTTCTTCAAAAATGATTGGGACGATTATGGCGTGACAAGAATTTCAAAATTTATAGCTGACTCAGGATGCTATCTAAGATGCGTAATATGGCCAGCAATGGGGGGTCGATTCTTCATTCATATCCATTCGGGAGTCTCTCAACAGGGGTGGAAATCCTTTCCGAAAATGTTGAATGAGTTTTTGATAAAATATGAATACACTCAATGGAAAAAGCAACAACTCCCTAAAACAAAACCCATCAATCAGAGACCGACAGGGGTCGAAATACTATCCGTTCAGGTTCAGGGCCCAAGCTATGCAGATAAGGTGAAGTTAAAAGATCAACGCTGA

mRNA sequence

ATGACAAATGCTATAGAGGTGGAAAGTTGTAATGTTCATGGTTCGCCTTACTGTATTTGGTTTGAAGAAGGTTCTTTCCATTTTGAGGACGTGGAAGCCAAAGAAACTCTACCGTTGTCAAACTCCCATTTGAGATGGTTTATCAAATCCATATTAGAACTGCTCCAAGGCCCTCCCAATAGGTACTTCTTCAAAAATGATTGGGACGATTATGGCGTGACAAGAATTTCAAAATTTATAGCTGACTCAGGATGCTATCTAAGATGCGTAATATGGCCAGCAATGGGGGGTCGATTCTTCATTCATATCCATTCGGGAGTCTCTCAACAGGGGTGGAAATCCTTTCCGAAAATGTTGAATGAGTTTTTGATAAAATATGAATACACTCAATGGAAAAAGCAACAACTCCCTAAAACAAAACCCATCAATCAGAGACCGACAGGGGTCGAAATACTATCCGTTCAGGTTCAGGGCCCAAGCTATGCAGATAAGGTGAAGTTAAAAGATCAACGCTGA

Coding sequence (CDS)

ATGACAAATGCTATAGAGGTGGAAAGTTGTAATGTTCATGGTTCGCCTTACTGTATTTGGTTTGAAGAAGGTTCTTTCCATTTTGAGGACGTGGAAGCCAAAGAAACTCTACCGTTGTCAAACTCCCATTTGAGATGGTTTATCAAATCCATATTAGAACTGCTCCAAGGCCCTCCCAATAGGTACTTCTTCAAAAATGATTGGGACGATTATGGCGTGACAAGAATTTCAAAATTTATAGCTGACTCAGGATGCTATCTAAGATGCGTAATATGGCCAGCAATGGGGGGTCGATTCTTCATTCATATCCATTCGGGAGTCTCTCAACAGGGGTGGAAATCCTTTCCGAAAATGTTGAATGAGTTTTTGATAAAATATGAATACACTCAATGGAAAAAGCAACAACTCCCTAAAACAAAACCCATCAATCAGAGACCGACAGGGGTCGAAATACTATCCGTTCAGGTTCAGGGCCCAAGCTATGCAGATAAGGTGAAGTTAAAAGATCAACGCTGA

Protein sequence

MTNAIEVESCNVHGSPYCIWFEEGSFHFEDVEAKETLPLSNSHLRWFIKSILELLQGPPNRYFFKNDWDDYGVTRISKFIADSGCYLRCVIWPAMGGRFFIHIHSGVSQQGWKSFPKMLNEFLIKYEYTQWKKQQLPKTKPINQRPTGVEILSVQVQGPSYADKVKLKDQR

Homology

[Close]

BLAST of Clc06G10908 vs. NCBI nr
Match: KAA0036035.1 (putative 3,4-dihydroxy-2-butanone kinase isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 104.0 bits (258), Expect = 1.3e-18
Identity = 56/129 (43.41%), Postives = 71/129 (55.04%), Query Frame = 0


Query: 3   NAIEVESCNVHGSPYCIWFEEGSFHFEDVEAKETLPLSNSHLRWFIKSILELLQGPPNRY 62
           +++E+  C +  S YCIW EE S   EDVEA  ++  S S LRW    I  LL+   +  
Sbjct: 41  HSMEIVGCKIDQSHYCIWKEEDSCFIEDVEACRSISTSISQLRWTKSVISNLLRTLVDNN 100

Query: 63  FFKNDWDDYGVTRISKFIADSGCYLRCVIWPAMGGRFFIHIHSGVSQQGWKSFPKMLNEF 122
           F K    D G  RISKF A SG  L C  WP  GG F I   SG +QQGW S  +ML +F
Sbjct: 101 FKKFGDIDGGRLRISKFQAKSGWVLSCDHWPYSGGLFNIRDCSGKNQQGWMSLCRMLEKF 160

Query: 123 LIKYEYTQW 132
           + K +Y +W
Sbjct: 161 VEKMDYVRW 169

[Close]

BLAST of Clc06G10908 vs. NCBI nr
Match: TYJ98834.1 (putative 3,4-dihydroxy-2-butanone kinase isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 104.0 bits (258), Expect = 1.3e-18
Identity = 56/129 (43.41%), Postives = 71/129 (55.04%), Query Frame = 0


Query: 3   NAIEVESCNVHGSPYCIWFEEGSFHFEDVEAKETLPLSNSHLRWFIKSILELLQGPPNRY 62
           +++E+  C +  S YCIW EE S   EDVEA  ++  S S LRW    I  LL+   +  
Sbjct: 215 HSMEIVGCKIDQSHYCIWKEEDSCFIEDVEACRSISTSISQLRWTKSVISNLLRTLVDNN 274

Query: 63  FFKNDWDDYGVTRISKFIADSGCYLRCVIWPAMGGRFFIHIHSGVSQQGWKSFPKMLNEF 122
           F K    D G  RISKF A SG  L C  WP  GG F I   SG +QQGW S  +ML +F
Sbjct: 275 FKKFGDIDGGRLRISKFQAKSGWVLSCDHWPYSGGLFNIRDCSGKNQQGWMSLCRMLEKF 334

Query: 123 LIKYEYTQW 132
           + K +Y +W
Sbjct: 335 VEKMDYVRW 343

[Close]

BLAST of Clc06G10908 vs. NCBI nr
Match: TYJ98411.1 (nucleotide binding protein [Cucumis melo var. makuwa])

HSP 1 Score: 94.0 bits (232), Expect = 1.4e-15
Identity = 38/74 (51.35%), Postives = 52/74 (70.27%), Query Frame = 0


Query: 6   EVESCNVHGSPYCIWFEEGSFHFEDVEAKETLPLSNSHLRWFIKSILELLQGPPNRYFFK 65
           +VE C V   PYCIWF++  FH EDVEA++ L LS++  RWF+K I E L+GP N +  +
Sbjct: 261 KVERCKVVNVPYCIWFDKDYFHIEDVEARKILSLSDTQFRWFLKEISEFLRGPENGFLLR 320

Query: 66  NDWDDYGVTRISKF 80
           N +DD+G TR+ KF
Sbjct: 321 NGFDDFGSTRLLKF 334

[Close]

BLAST of Clc06G10908 vs. NCBI nr
Match: TYK02777.1 (Transposon TX1 uncharacterized [Cucumis melo var. makuwa])

HSP 1 Score: 81.3 bits (199), Expect = 9.2e-12
Identity = 35/79 (44.30%), Postives = 50/79 (63.29%), Query Frame = 0


Query: 9  SCNVHGSPYCIWFEEGSFHFEDVEAKETLPLSNSHLRWFIKSILELLQGPPNRYFFKNDW 68
          SC +    YCIW E+G FH EDV+ ++ + LS + L WF  SI  L++ P  ++F K+  
Sbjct: 4  SCKIVDPFYCIWLEKGQFHIEDVDFQKIISLSKTQLEWFTNSIAVLVKEPAWKFFSKSGN 63

Query: 69 DDYGVTRISKFIADSGCYL 88
          DD G+TR+SKF   SG +L
Sbjct: 64 DDAGITRLSKFQTPSGWFL 82

[Close]

BLAST of Clc06G10908 vs. NCBI nr
Match: KAA0063979.1 (hypothetical protein E6C27_scaffold616G001380 [Cucumis melo var. makuwa])

HSP 1 Score: 78.2 bits (191), Expect = 7.8e-11
Identity = 35/86 (40.70%), Postives = 53/86 (61.63%), Query Frame = 0


Query: 5  IEVESCNVHGSPYCIWFEEGSFHFEDVEAKETLPLSNSHLRWFIKSILELLQGPPNRYFF 64
          +EV S  +  S YCIW ++  FH EDV+ ++ L +S + LRWFI ++L+L+Q   + +F 
Sbjct: 1  MEVRSRKIAKSIYCIWSDKVHFHIEDVDFRKNLRVSKNQLRWFIAAMLDLVQDEEHCFFL 60

Query: 65 KNDWDDYGVTRISKFIADSGCYLRCV 91
          KN  D  G TR++KF       +RCV
Sbjct: 61 KNGRDTDGTTRLTKFRRSPEWIVRCV 86

[Close]

BLAST of Clc06G10908 vs. ExPASy TrEMBL
Match: A0A5D3BIE8 (Putative 3,4-dihydroxy-2-butanone kinase isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G00250 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 6.4e-19
Identity = 56/129 (43.41%), Postives = 71/129 (55.04%), Query Frame = 0


Query: 3   NAIEVESCNVHGSPYCIWFEEGSFHFEDVEAKETLPLSNSHLRWFIKSILELLQGPPNRY 62
           +++E+  C +  S YCIW EE S   EDVEA  ++  S S LRW    I  LL+   +  
Sbjct: 215 HSMEIVGCKIDQSHYCIWKEEDSCFIEDVEACRSISTSISQLRWTKSVISNLLRTLVDNN 274

Query: 63  FFKNDWDDYGVTRISKFIADSGCYLRCVIWPAMGGRFFIHIHSGVSQQGWKSFPKMLNEF 122
           F K    D G  RISKF A SG  L C  WP  GG F I   SG +QQGW S  +ML +F
Sbjct: 275 FKKFGDIDGGRLRISKFQAKSGWVLSCDHWPYSGGLFNIRDCSGKNQQGWMSLCRMLEKF 334

Query: 123 LIKYEYTQW 132
           + K +Y +W
Sbjct: 335 VEKMDYVRW 343

[Close]

BLAST of Clc06G10908 vs. ExPASy TrEMBL
Match: A0A5A7T3H6 (Putative 3,4-dihydroxy-2-butanone kinase isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold112G00260 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 6.4e-19
Identity = 56/129 (43.41%), Postives = 71/129 (55.04%), Query Frame = 0


Query: 3   NAIEVESCNVHGSPYCIWFEEGSFHFEDVEAKETLPLSNSHLRWFIKSILELLQGPPNRY 62
           +++E+  C +  S YCIW EE S   EDVEA  ++  S S LRW    I  LL+   +  
Sbjct: 41  HSMEIVGCKIDQSHYCIWKEEDSCFIEDVEACRSISTSISQLRWTKSVISNLLRTLVDNN 100

Query: 63  FFKNDWDDYGVTRISKFIADSGCYLRCVIWPAMGGRFFIHIHSGVSQQGWKSFPKMLNEF 122
           F K    D G  RISKF A SG  L C  WP  GG F I   SG +QQGW S  +ML +F
Sbjct: 101 FKKFGDIDGGRLRISKFQAKSGWVLSCDHWPYSGGLFNIRDCSGKNQQGWMSLCRMLEKF 160

Query: 123 LIKYEYTQW 132
           + K +Y +W
Sbjct: 161 VEKMDYVRW 169

[Close]

BLAST of Clc06G10908 vs. ExPASy TrEMBL
Match: A0A5D3BIA6 (Nucleotide binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G00070 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 6.6e-16
Identity = 38/74 (51.35%), Postives = 52/74 (70.27%), Query Frame = 0


Query: 6   EVESCNVHGSPYCIWFEEGSFHFEDVEAKETLPLSNSHLRWFIKSILELLQGPPNRYFFK 65
           +VE C V   PYCIWF++  FH EDVEA++ L LS++  RWF+K I E L+GP N +  +
Sbjct: 261 KVERCKVVNVPYCIWFDKDYFHIEDVEARKILSLSDTQFRWFLKEISEFLRGPENGFLLR 320

Query: 66  NDWDDYGVTRISKF 80
           N +DD+G TR+ KF
Sbjct: 321 NGFDDFGSTRLLKF 334

[Close]

BLAST of Clc06G10908 vs. ExPASy TrEMBL
Match: A0A5D3BTI0 (Transposon TX1 uncharacterized OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold145G00360 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 4.4e-12
Identity = 35/79 (44.30%), Postives = 50/79 (63.29%), Query Frame = 0


Query: 9  SCNVHGSPYCIWFEEGSFHFEDVEAKETLPLSNSHLRWFIKSILELLQGPPNRYFFKNDW 68
          SC +    YCIW E+G FH EDV+ ++ + LS + L WF  SI  L++ P  ++F K+  
Sbjct: 4  SCKIVDPFYCIWLEKGQFHIEDVDFQKIISLSKTQLEWFTNSIAVLVKEPAWKFFSKSGN 63

Query: 69 DDYGVTRISKFIADSGCYL 88
          DD G+TR+SKF   SG +L
Sbjct: 64 DDAGITRLSKFQTPSGWFL 82

[Close]

BLAST of Clc06G10908 vs. ExPASy TrEMBL
Match: A0A5A7VEL7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold616G001380 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 3.8e-11
Identity = 35/86 (40.70%), Postives = 53/86 (61.63%), Query Frame = 0


Query: 5  IEVESCNVHGSPYCIWFEEGSFHFEDVEAKETLPLSNSHLRWFIKSILELLQGPPNRYFF 64
          +EV S  +  S YCIW ++  FH EDV+ ++ L +S + LRWFI ++L+L+Q   + +F 
Sbjct: 1  MEVRSRKIAKSIYCIWSDKVHFHIEDVDFRKNLRVSKNQLRWFIAAMLDLVQDEEHCFFL 60

Query: 65 KNDWDDYGVTRISKFIADSGCYLRCV 91
          KN  D  G TR++KF       +RCV
Sbjct: 61 KNGRDTDGTTRLTKFRRSPEWIVRCV 86

The following BLAST results are available for this feature:

BLAST of Clc06G10908 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0036035.1	1.3e-18	43.41	putative 3,4-dihydroxy-2-butanone kinase isoform X2 [Cucumis melo var. makuwa]	[more]
TYJ98834.1	1.3e-18	43.41	putative 3,4-dihydroxy-2-butanone kinase isoform X1 [Cucumis melo var. makuwa]	[more]
TYJ98411.1	1.4e-15	51.35	nucleotide binding protein [Cucumis melo var. makuwa]	[more]
TYK02777.1	9.2e-12	44.30	Transposon TX1 uncharacterized [Cucumis melo var. makuwa]	[more]
KAA0063979.1	7.8e-11	40.70	hypothetical protein E6C27_scaffold616G001380 [Cucumis melo var. makuwa]	[more]

BLAST of Clc06G10908 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc06G10908 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BIE8	6.4e-19	43.41	Putative 3,4-dihydroxy-2-butanone kinase isoform X1 OS=Cucumis melo var. makuwa ...	[more]
A0A5A7T3H6	6.4e-19	43.41	Putative 3,4-dihydroxy-2-butanone kinase isoform X2 OS=Cucumis melo var. makuwa ...	[more]
A0A5D3BIA6	6.6e-16	51.35	Nucleotide binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A5D3BTI0	4.4e-12	44.30	Transposon TX1 uncharacterized OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5A7VEL7	3.8e-11	40.70	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of Clc06G10908 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc06G10908.1	Clc06G10908.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006520	cellular amino acid metabolic process
biological_process	GO:0006811	ion transport
biological_process	GO:0016053	organic acid biosynthetic process
biological_process	GO:1901566	organonitrogen compound biosynthetic process
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0110165	cellular anatomical entity
molecular_function	GO:0005488	binding