Clc06G10535 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGATGGGACACCTTCAAATTGTTGGTGAAATCAAGAAGCTCAATACTCAAAACTACAAAACATGGTTCACATGCATGAAGTCGTATCTCCAAGGCCAAAACTTGTGGGGTGTTGCGGGAGGCATTAAGGTCAAGCCACCTGAAGATGTTATTGCTTTTAAGAAATGGAATATCAAGGAAGGTAAGGTCATGTTTGCAATTAGAATTATAATTGATGAAGAAATGTTGGAGCACATCAATATAGTGCAGATGCCAAAGATAGCATGGGCATGTTTGCCTCACTTTTCTCAAAGAAAAATGATGCGAGATTTTAGTTTCCGGAGAACAAGCTCCTAA ATGATGGGACACCTTCAAATTGTTGGTGAAATCAAGAAGCTCAATACTCAAAACTACAAAACATGGTTCACATGCATGAAGTCGTATCTCCAAGGCCAAAACTTGTGGGGTGTTGCGGGAGGCATTAAGGTCAAGCCACCTGAAGATGTTATTGCTTTTAAGAAATGGAATATCAAGGAAGGTAAGGTCATGTTTGCAATTAGAATTATAATTGATGAAGAAATGTTGGAGCACATCAATATAGTGCAGATGCCAAAGATAGCATGGGCATGTTTGCCTCACTTTTCTCAAAGAAAAATGATGCGAGATTTTAGTTTCCGGAGAACAAGCTCCTAA ATGATGGGACACCTTCAAATTGTTGGTGAAATCAAGAAGCTCAATACTCAAAACTACAAAACATGGTTCACATGCATGAAGTCGTATCTCCAAGGCCAAAACTTGTGGGGTGTTGCGGGAGGCATTAAGGTCAAGCCACCTGAAGATGTTATTGCTTTTAAGAAATGGAATATCAAGGAAGGTAAGGTCATGTTTGCAATTAGAATTATAATTGATGAAGAAATGTTGGAGCACATCAATATAGTGCAGATGCCAAAGATAGCATGGGCATGTTTGCCTCACTTTTCTCAAAGAAAAATGATGCGAGATTTTAGTTTCCGGAGAACAAGCTCCTAA MMGHLQIVGEIKKLNTQNYKTWFTCMKSYLQGQNLWGVAGGIKVKPPEDVIAFKKWNIKEGKVMFAIRIIIDEEMLEHINIVQMPKIAWACLPHFSQRKMMRDFSFRRTSS Homology
BLAST of Clc06G10535 vs. NCBI nr
Match: KAA0037685.1 (uncharacterized protein E6C27_scaffold1593G00060 [Cucumis melo var. makuwa] >TYK10688.1 uncharacterized protein E5676_scaffold25G00550 [Cucumis melo var. makuwa]) HSP 1 Score: 140.2 bits (352), Expect = 1.1e-29 Identity = 64/86 (74.42%), Postives = 71/86 (82.56%), Query Frame = 0
BLAST of Clc06G10535 vs. NCBI nr
Match: KAA0037350.1 (Integrase, catalytic core [Cucumis melo var. makuwa] >TYJ97557.1 Integrase, catalytic core [Cucumis melo var. makuwa]) HSP 1 Score: 133.3 bits (334), Expect = 1.3e-27 Identity = 62/89 (69.66%), Postives = 69/89 (77.53%), Query Frame = 0
BLAST of Clc06G10535 vs. NCBI nr
Match: KAA0051808.1 (UBN2_3 domain-containing protein [Cucumis melo var. makuwa] >TYK21433.1 UBN2_3 domain-containing protein [Cucumis melo var. makuwa]) HSP 1 Score: 132.9 bits (333), Expect = 1.7e-27 Identity = 59/89 (66.29%), Postives = 68/89 (76.40%), Query Frame = 0
BLAST of Clc06G10535 vs. NCBI nr
Match: KAA0045163.1 (UBN2_3 domain-containing protein [Cucumis melo var. makuwa] >TYK23575.1 UBN2_3 domain-containing protein [Cucumis melo var. makuwa]) HSP 1 Score: 131.0 bits (328), Expect = 6.5e-27 Identity = 60/89 (67.42%), Postives = 68/89 (76.40%), Query Frame = 0
BLAST of Clc06G10535 vs. NCBI nr
Match: XP_023758851.1 (uncharacterized protein LOC111907314 [Lactuca sativa]) HSP 1 Score: 119.4 bits (298), Expect = 2.0e-23 Identity = 56/90 (62.22%), Postives = 65/90 (72.22%), Query Frame = 0
BLAST of Clc06G10535 vs. ExPASy TrEMBL
Match: A0A5D3CHH6 (DUF4219 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold25G00550 PE=4 SV=1) HSP 1 Score: 140.2 bits (352), Expect = 5.2e-30 Identity = 64/86 (74.42%), Postives = 71/86 (82.56%), Query Frame = 0
BLAST of Clc06G10535 vs. ExPASy TrEMBL
Match: A0A5A7T1U9 (Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold85G00800 PE=4 SV=1) HSP 1 Score: 133.3 bits (334), Expect = 6.4e-28 Identity = 62/89 (69.66%), Postives = 69/89 (77.53%), Query Frame = 0
BLAST of Clc06G10535 vs. ExPASy TrEMBL
Match: A0A5D3DCY7 (UBN2_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold609G00980 PE=4 SV=1) HSP 1 Score: 132.9 bits (333), Expect = 8.3e-28 Identity = 59/89 (66.29%), Postives = 68/89 (76.40%), Query Frame = 0
BLAST of Clc06G10535 vs. ExPASy TrEMBL
Match: A0A5A7TNQ2 (UBN2_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G00830 PE=4 SV=1) HSP 1 Score: 131.0 bits (328), Expect = 3.2e-27 Identity = 60/89 (67.42%), Postives = 68/89 (76.40%), Query Frame = 0
BLAST of Clc06G10535 vs. ExPASy TrEMBL
Match: A0A5D3E785 (DUF4219 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold172G00180 PE=4 SV=1) HSP 1 Score: 117.5 bits (293), Expect = 3.6e-23 Identity = 61/89 (68.54%), Postives = 67/89 (75.28%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
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