Clc06G10203 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc06G10203
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Ycf2 protein
Location	ClcChr06: 14933238 .. 14934576 (+)
RNA-Seq Expression	Clc06G10203
Synteny	Clc06G10203

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCTCGCACTCGATAAAAGAGCTTTACAAGCGACATTGCCCTTCTTCACTCATGCGATATTGCTTGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCTCGTGCGAGTACAGGCCGTGTCTCTATCCTAGTGTGGCTGATCATCCAAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCTGACCAACGACCTATTGAGTCTTTATTTTTTTATATTTATATATAAAAAATGATATATAAAAATGAACGAATTGTAATGAATCGATTCCAACATCTCCAGTTGAAAAAAGAATCGAATATTCATTGATCAAATTATTTACTCCATCATACATAGTCTGATAGATCTTTTGAAGAACTGATTAATCAGATGTGAACAAAATAAAGATAGAGTCTCATTCTACATGTCAATACCGACAAAAATGACCCTGCGGTCGACATTCCATTCCCTTTAGTCATAGGTGCTCATTCGATTTTGATTTGAATGGGTTGGGTCTCCCAAGGCGAGGTACATATGACCGGCCCTTCAGGTGTCTCGATGATACAAACAAGGAAAAGTCGAATTCCAATCACATCCCCTATCATAACAAGCCAATCTGAGGAAACAGAATCGAATAATCTACCTGATTTTTGCCTTCCTGTTGATTCCGCCCGACAATCAAGTTGCACTTCCTTCTAACAAGTGGCTAAGAGTTAGCAAGCATCGATAAAAAGCCTAAACTTCAAGAATAGAACTGGACGCTTAATGGTAGTAAAGTCAGTCCAAGTCCATCTATAAAGACAGACAGATTCTTTGAGGCACATAGACCAATCAATCGTATCGGTAGCCGTTCTTAACCGAGACTCAGGTTAAGCTCTGTCTCGGAACCTTGTGGGGTTAGAAGTAAAGCATCCTGAGGTTGACGCATCTCGTTGGGCGTGGAGAAACATTAGGAACCAAAATAGCTTTCTTCGGAGCCGTTTCTTGTCCGTCCCCCCGCCCCGGCATACCCGCTTCGCTTTCGATGATTCAGAAGAATCCATATTATGCAAGGAGACATTGCTTTTGCTATTGTCAGTATGGGGTCTTTGTTGCAGTTGGTATCAGACATGGTTGAAGCCACCAAAAAAGGGCGACCCCTTTTCAAACCGAAAAAAGTACGTCACCTCAGTTACGAAGAAGTAGTTGGAACTGGGCTTCGAACTATGGAGCGGTCTGACCCCTTATTTGATCAAACATCTGAACTGAATTCTTTCTGGTTAAAGAATCTCTTTCTAGTTGCTCTGGAACAGTTAGGAGATTCCGTAGAAGAAATATGGGGTTCTGTTTCTAGTACCTAA

mRNA sequence

ATGATCTCGCACTCGATAAAAGAGCTTTACAAGCGACATTGCCCTTCTTCACTCATGCGATATTGCTTGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCTCGTGCGAGTACAGGCCGTGTCTCTATCCTAGTGTGGCTGATCATCCAAAAAGACCAGCTAAGCATCATTGGCTTGTTGGTATCAGACATGGTTGAAGCCACCAAAAAAGGGCGACCCCTTTTCAAACCGAAAAAAGTACGTCACCTCAGTTACGAAGAAGTAGTTGGAACTGGGCTTCGAACTATGGAGCGGTCTGACCCCTTATTTGATCAAACATCTGAACTGAATTCTTTCTGGTTAAAGAATCTCTTTCTAGTTGCTCTGGAACAGTTAGGAGATTCCGTAGAAGAAATATGGGGTTCTGTTTCTAGTACCTAA

Coding sequence (CDS)

ATGATCTCGCACTCGATAAAAGAGCTTTACAAGCGACATTGCCCTTCTTCACTCATGCGATATTGCTTGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCTCGTGCGAGTACAGGCCGTGTCTCTATCCTAGTGTGGCTGATCATCCAAAAAGACCAGCTAAGCATCATTGGCTTGTTGGTATCAGACATGGTTGAAGCCACCAAAAAAGGGCGACCCCTTTTCAAACCGAAAAAAGTACGTCACCTCAGTTACGAAGAAGTAGTTGGAACTGGGCTTCGAACTATGGAGCGGTCTGACCCCTTATTTGATCAAACATCTGAACTGAATTCTTTCTGGTTAAAGAATCTCTTTCTAGTTGCTCTGGAACAGTTAGGAGATTCCGTAGAAGAAATATGGGGTTCTGTTTCTAGTACCTAA

Protein sequence

MISHSIKELYKRHCPSSLMRYCLIGLSPIVQDSPLLPPRASTGRVSILVWLIIQKDQLSIIGLLVSDMVEATKKGRPLFKPKKVRHLSYEEVVGTGLRTMERSDPLFDQTSELNSFWLKNLFLVALEQLGDSVEEIWGSVSST

Homology

[Close]

BLAST of Clc06G10203 vs. NCBI nr
Match: VAI72608.1 (unnamed protein product [Triticum turgidum subsp. durum])

HSP 1 Score: 109.4 bits (272), Expect = 2.6e-20
Identity = 53/64 (82.81%), Postives = 57/64 (89.06%), Query Frame = 0


Query: 1   MISHSIKELYKRHCPSSLMRYCLIGLSPIVQDSPLLPPRASTGRVSILVWLIIQKDQLSI 60
           MI+HS KELYK+HCPSSL RYC IGLSPIVQDSPLLPP  S GRVS+ VWLIIQKDQLSI
Sbjct: 97  MIAHSTKELYKQHCPSSLTRYCWIGLSPIVQDSPLLPPCGSPGRVSVPVWLIIQKDQLSI 156

Query: 61  IGLL 65
           IGL+
Sbjct: 157 IGLV 160

[Close]

BLAST of Clc06G10203 vs. NCBI nr
Match: KAF5786086.1 (hypothetical protein HanXRQr2_Chr10g0436591 [Helianthus annuus])

HSP 1 Score: 75.1 bits (183), Expect = 5.5e-10
Identity = 34/38 (89.47%), Postives = 35/38 (92.11%), Query Frame = 0


Query: 1   MISHSIKELYKRHCPSSLMRYCLIGLSPIVQDSPLLPP 39
           MI+HS KELYKRHCPSSL RYC IGLSPIVQDSPLLPP
Sbjct: 100 MIAHSTKELYKRHCPSSLTRYCWIGLSPIVQDSPLLPP 137

[Close]

BLAST of Clc06G10203 vs. NCBI nr
Match: PUZ39272.1 (hypothetical protein GQ55_9G274100 [Panicum hallii var. hallii])

HSP 1 Score: 75.1 bits (183), Expect = 5.5e-10
Identity = 34/38 (89.47%), Postives = 35/38 (92.11%), Query Frame = 0


Query: 1  MISHSIKELYKRHCPSSLMRYCLIGLSPIVQDSPLLPP 39
          MI+HS KELYKRHCPSSL RYC IGLSPIVQDSPLLPP
Sbjct: 1  MIAHSTKELYKRHCPSSLTRYCWIGLSPIVQDSPLLPP 38

[Close]

BLAST of Clc06G10203 vs. NCBI nr
Match: KAA0060780.1 (ORF40s [Cucumis melo var. makuwa])

HSP 1 Score: 75.1 bits (183), Expect = 5.5e-10
Identity = 34/38 (89.47%), Postives = 35/38 (92.11%), Query Frame = 0


Query: 1   MISHSIKELYKRHCPSSLMRYCLIGLSPIVQDSPLLPP 39
           MI+HS KELYKRHCPSSL RYC IGLSPIVQDSPLLPP
Sbjct: 117 MIAHSTKELYKRHCPSSLTRYCWIGLSPIVQDSPLLPP 154

[Close]

BLAST of Clc06G10203 vs. NCBI nr
Match: GEV66758.1 (hypothetical protein [Tanacetum cinerariifolium])

HSP 1 Score: 72.8 bits (177), Expect = 2.7e-09
Identity = 33/38 (86.84%), Postives = 35/38 (92.11%), Query Frame = 0


Query: 1  MISHSIKELYKRHCPSSLMRYCLIGLSPIVQDSPLLPP 39
          MI+HS+KELYKRHCPSSL RYC I LSPIVQDSPLLPP
Sbjct: 31 MIAHSMKELYKRHCPSSLTRYCWIELSPIVQDSPLLPP 68

[Close]

BLAST of Clc06G10203 vs. ExPASy Swiss-Prot
Match: Q2QD30 (Protein Ycf2 OS=Cucumis sativus OX=3659 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.8e-08
Identity = 28/32 (87.50%), Postives = 29/32 (90.62%), Query Frame = 0


Query: 110  TSELNSFWLKNLFLVALEQLGDSVEEIWGSVS 142
            T E NSFWLKNLFLVALEQLGDS+EEIWGS S
Sbjct: 1107 TYERNSFWLKNLFLVALEQLGDSLEEIWGSAS 1138

[Close]

BLAST of Clc06G10203 vs. ExPASy Swiss-Prot
Match: Q589A6 (Protein Ycf2 OS=Silene latifolia OX=37657 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.8e-08
Identity = 28/32 (87.50%), Postives = 29/32 (90.62%), Query Frame = 0


Query: 110  TSELNSFWLKNLFLVALEQLGDSVEEIWGSVS 142
            TSE N FWLKNLFLVALEQLGDS+EEIWGS S
Sbjct: 1336 TSESNFFWLKNLFLVALEQLGDSLEEIWGSAS 1367

[Close]

BLAST of Clc06G10203 vs. ExPASy Swiss-Prot
Match: Q0G9Q1 (Protein Ycf2 OS=Daucus carota OX=4039 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.4e-08
Identity = 28/32 (87.50%), Postives = 29/32 (90.62%), Query Frame = 0


Query: 110  TSELNSFWLKNLFLVALEQLGDSVEEIWGSVS 142
            TSE NSFWLKNLFLVALEQLGDS+EEIWG  S
Sbjct: 1192 TSEPNSFWLKNLFLVALEQLGDSLEEIWGFAS 1223

[Close]

BLAST of Clc06G10203 vs. ExPASy Swiss-Prot
Match: A6MM80 (Protein Ycf2 OS=Buxus microphylla OX=153571 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.1e-08
Identity = 29/32 (90.62%), Postives = 30/32 (93.75%), Query Frame = 0


Query: 110  TSELNSFWLKNLFLVALEQLGDSVEEIWGSVS 142
            TSELNSFWLKNLFLVALEQLGDS+EEI GS S
Sbjct: 1394 TSELNSFWLKNLFLVALEQLGDSLEEIRGSAS 1425

[Close]

BLAST of Clc06G10203 vs. ExPASy Swiss-Prot
Match: A6MMG6 (Protein Ycf2 OS=Chloranthus spicatus OX=13006 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.1e-08
Identity = 29/32 (90.62%), Postives = 30/32 (93.75%), Query Frame = 0


Query: 110  TSELNSFWLKNLFLVALEQLGDSVEEIWGSVS 142
            TSELNSFWLKNLFLVALEQLGDS+EEI GS S
Sbjct: 1404 TSELNSFWLKNLFLVALEQLGDSLEEIRGSAS 1435

[Close]

BLAST of Clc06G10203 vs. ExPASy TrEMBL
Match: A0A446X8H3 (Uncharacterized protein OS=Triticum turgidum subsp. durum OX=4567 GN=TRITD_7Av1G067250 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 1.3e-20
Identity = 53/64 (82.81%), Postives = 57/64 (89.06%), Query Frame = 0


Query: 1   MISHSIKELYKRHCPSSLMRYCLIGLSPIVQDSPLLPPRASTGRVSILVWLIIQKDQLSI 60
           MI+HS KELYK+HCPSSL RYC IGLSPIVQDSPLLPP  S GRVS+ VWLIIQKDQLSI
Sbjct: 97  MIAHSTKELYKQHCPSSLTRYCWIGLSPIVQDSPLLPPCGSPGRVSVPVWLIIQKDQLSI 156

Query: 61  IGLL 65
           IGL+
Sbjct: 157 IGLV 160

[Close]

BLAST of Clc06G10203 vs. ExPASy TrEMBL
Match: A0A2T7C7G7 (Uncharacterized protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_9G274100 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 2.7e-10
Identity = 34/38 (89.47%), Postives = 35/38 (92.11%), Query Frame = 0


Query: 1  MISHSIKELYKRHCPSSLMRYCLIGLSPIVQDSPLLPP 39
          MI+HS KELYKRHCPSSL RYC IGLSPIVQDSPLLPP
Sbjct: 1  MIAHSTKELYKRHCPSSLTRYCWIGLSPIVQDSPLLPP 38

[Close]

BLAST of Clc06G10203 vs. ExPASy TrEMBL
Match: A0A5A7V0C9 (ORF40s OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold44334G00020 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 2.7e-10
Identity = 34/38 (89.47%), Postives = 35/38 (92.11%), Query Frame = 0


Query: 1   MISHSIKELYKRHCPSSLMRYCLIGLSPIVQDSPLLPP 39
           MI+HS KELYKRHCPSSL RYC IGLSPIVQDSPLLPP
Sbjct: 117 MIAHSTKELYKRHCPSSLTRYCWIGLSPIVQDSPLLPP 154

[Close]

BLAST of Clc06G10203 vs. ExPASy TrEMBL
Match: A0A0A9RWP6 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 2.7e-10
Identity = 34/38 (89.47%), Postives = 35/38 (92.11%), Query Frame = 0


Query: 1   MISHSIKELYKRHCPSSLMRYCLIGLSPIVQDSPLLPP 39
           MI+HS KELYKRHCPSSL RYC IGLSPIVQDSPLLPP
Sbjct: 98  MIAHSTKELYKRHCPSSLTRYCWIGLSPIVQDSPLLPP 135

[Close]

BLAST of Clc06G10203 vs. ExPASy TrEMBL
Match: K4D8K8 (Uncharacterized protein OS=Solanum lycopersicum OX=4081 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 5.0e-09
Identity = 32/37 (86.49%), Postives = 34/37 (91.89%), Query Frame = 0


Query: 1  MISHSIKELYKRHCPSSLMRYCLIGLSPIVQDSPLLP 38
          MI+H +KELYKRHCPSSL RYC IGLSPIVQDSPLLP
Sbjct: 1  MIAHLMKELYKRHCPSSLTRYCWIGLSPIVQDSPLLP 37

[Close]

BLAST of Clc06G10203 vs. TAIR 10
Match: ATCG00860.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 56.2 bits (134), Expect = 2.5e-08
Identity = 27/30 (90.00%), Postives = 28/30 (93.33%), Query Frame = 0


Query: 110  TSELNSFWLKNLFLVALEQLGDSVEEIWGS 140
            TSELNSFWLKNLFLVALEQLGD +EEI GS
Sbjct: 1407 TSELNSFWLKNLFLVALEQLGDCLEEIRGS 1436

[Close]

BLAST of Clc06G10203 vs. TAIR 10
Match: ATCG01280.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 56.2 bits (134), Expect = 2.5e-08
Identity = 27/30 (90.00%), Postives = 28/30 (93.33%), Query Frame = 0


Query: 110  TSELNSFWLKNLFLVALEQLGDSVEEIWGS 140
            TSELNSFWLKNLFLVALEQLGD +EEI GS
Sbjct: 1407 TSELNSFWLKNLFLVALEQLGDCLEEIRGS 1436

The following BLAST results are available for this feature:

BLAST of Clc06G10203 vs. NCBI nr


Match Name	E-value	Identity	Description
VAI72608.1	2.6e-20	82.81	unnamed protein product [Triticum turgidum subsp. durum]	[more]
KAF5786086.1	5.5e-10	89.47	hypothetical protein HanXRQr2_Chr10g0436591 [Helianthus annuus]	[more]
PUZ39272.1	5.5e-10	89.47	hypothetical protein GQ55_9G274100 [Panicum hallii var. hallii]	[more]
KAA0060780.1	5.5e-10	89.47	ORF40s [Cucumis melo var. makuwa]	[more]
GEV66758.1	2.7e-09	86.84	hypothetical protein [Tanacetum cinerariifolium]	[more]

BLAST of Clc06G10203 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q2QD30	1.8e-08	87.50	Protein Ycf2 OS=Cucumis sativus OX=3659 GN=ycf2-A PE=3 SV=1	[more]
Q589A6	1.8e-08	87.50	Protein Ycf2 OS=Silene latifolia OX=37657 GN=ycf2 PE=3 SV=1	[more]
Q0G9Q1	2.4e-08	87.50	Protein Ycf2 OS=Daucus carota OX=4039 GN=ycf2-A PE=3 SV=1	[more]
A6MM80	3.1e-08	90.63	Protein Ycf2 OS=Buxus microphylla OX=153571 GN=ycf2-A PE=3 SV=1	[more]
A6MMG6	3.1e-08	90.63	Protein Ycf2 OS=Chloranthus spicatus OX=13006 GN=ycf2-A PE=3 SV=1	[more]

BLAST of Clc06G10203 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A446X8H3	1.3e-20	82.81	Uncharacterized protein OS=Triticum turgidum subsp. durum OX=4567 GN=TRITD_7Av1G...	[more]
A0A2T7C7G7	2.7e-10	89.47	Uncharacterized protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_9G27410...	[more]
A0A5A7V0C9	2.7e-10	89.47	ORF40s OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold44334G00020 PE=4 ...	[more]
A0A0A9RWP6	2.7e-10	89.47	Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1	[more]
K4D8K8	5.0e-09	86.49	Uncharacterized protein OS=Solanum lycopersicum OX=4081 PE=4 SV=1	[more]

BLAST of Clc06G10203 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00860.1	2.5e-08	90.00	Chloroplast Ycf2;ATPase, AAA type, core	[more]
ATCG01280.1	2.5e-08	90.00	Chloroplast Ycf2;ATPase, AAA type, core	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008543	Uncharacterised protein family Ycf2	PFAM	PF05695	DUF825	coord: 109..141 e-value: 4.6E-11 score: 40.7

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc06G10203.1	Clc06G10203.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016887	ATP hydrolysis activity