Clc06G09920 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc06G09920
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	40S ribosomal protein S24
Location	ClcChr06: 13336227 .. 13341893 (+)
RNA-Seq Expression	Clc06G09920
Synteny	Clc06G09920

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACTTGGTGTTCGTGAAGATGTGAAAACTATTGTCAATACGTAAGTAATTAAAAGTATTTCACATTATGTATATTCATTATGCTAACAATTTAATATCTTTGTGCGTTTGTTTTGTTTAGGGGCATAAGAATGTTTTATGCTCGAATAAGTACACGATTTCGACTTGTTATGTGGGTATCCGTTAAGGTAAGCATTTCAATTTCGATGTAATGATATTATATTTTAGATTACAAGATTTGGTTTATTCTAACATGGGTTGAAATATATGTGTACATATATAGTGTGCTAAACAACTGGGAAGCACGGAATGTGAGTATTATACTATGAAGTTTATACATTACATAGTAACTTGGAGGAGCACAACAGTTACAGACGTGGTATGCATTTGCTTAAACCATATTGTTTAACTATAGTTTTTACACTTAATATAATTGTTTTTAATCAATATAATATGGTTTGTTTACTTGTAGTTGACGAGACAAACACAATATAGTCAATTGGAATTAGACACACTTAGAGTTGACTATTGTGACTTATAGGACGTTATATTTGAGTATTGTGACTCCACAATTTATTATTAGATTTAGGGACAAAGTTTTAGGTTCGATAGGTTCGAGTTTGGTAGGAGTATGCTTTACATGTTTCTGTTTCAAGATACTAACTTATTAGTTGATTAATGAAAATTATTTGATTCATTATGTTGTGCTATGATGTTTCAATGAGATGGTCTGATGTTGTCAATATAGATACTATGATTGAAATTTTGAGTTATGTAGTTGGTGTAATTATATGATTCGGATGGAGTAATGTGAGTGAAAAATTAAAGTTGTGTAGTTGGTGGCTTTTAGGAGATGTGTAAAATTGTATCTAAGTTGTTTGGAGTGTATGTAGATTGCAGGTATAAAACAGTTTTGGGGTCTATTACAAGTTGCTTCTGGGGGGTCACTCATGCATGTGCATAAATCTCGAAAAGAGGCATTTGTTGAAGGAGAAATTTTGGATCAATCAGAAATTGACATGACATTTCTCAAATTAATGACAAAATTACAAATAATTGAATTTAGGACCAATTAAAAGTTGACATGTGCCCCAAATTGAAATTGAAGACATAAATTGGCAAATCTCGATGAAGTCACGTGTTTTCGTCTTGACCGTTGGATTAAATAAAATAATTTGGTCCAATTTGGTATTAATATTTGGGCTAAAATCTAATTGAGTCCTAAAATGAGCTTAATTTGGGCCTAGGGCAATGAAGACCCAAGTCCAATTTATTGGGCCTAAGGACCAAACCCATGGACCAACCAAACCCAAGTCCACAAAGCCCATATGAGAACTCTATAAATAAAAGAGTTCTCTTCATTTGTGAGGTCATAAAATTCTACAGAGCCTAGAGAAAATTCTAAGAACATCCACGTGTTTTGCTTCCATAATCGTACGAACACTATATTGTTGCTATTCTTTTTATATATATATATATATATATATATATATATATTATTATCATGATCTCATTCTTTTCCTTATATCGCTTAATTGATTTTCATGGTTGGGAATAGTTTTTTTTTCCTTAATTGAGAATTAAACAAATGTTTCTCTATTTTTACTACTTCATATTGCTTGTCTTTTCATTTTTCTTTTCGTTTTCCCCTTCTTCCAATTATAATTATGTCCTTTAGTTATTTACTTCGTGTGGTAATAACTTTTAAAAAGTAATTGATGTTATGAAATATATATCTTTCTACTTTCCTTTTTCTTGTTTTTTTTTCTACTTTCCTTTTTCTTGTTTTTTTTTCTCTAGATTTCACTATCTTTTAAGAAACACACAAAATAGTAATAATTCTTCTGCCCTACTTTATATTGTTTTTCTTAATTGAGAGTTAAACAAAAGTTTCTCTATTTATTGTTTTATATTGTATGTCTTTATGTTGTTCCATTCTTCTTAATAGTTATTATGCATTTTCTTCTTTTGGTAGTCATTTAAAAAAAATTAAAATATATATATTTATTCACCAAAATTCGCTCTTTCCAAGAACCACCCAATAATGACATGTGAGTGTTGACAGAGATATTGAAAGCATTAGAGGATTAAAAATAGAGACTTAAGCTTGTTGATTTTATTGATTTGTAGTATAAGTATTACAATCTCTAATTTTTATCCTATGATGTCTTCCCTCAAATGCATAAACTTTAACCCTTAAACTTGATCTTTTTAGATAATTGGCCTTTGCCTTGATGATCTTCTTAGAGGATTGGCCTTTGGACTTGTTGATCTTCTTAGAGAATCAACCTTTGAGTTTGATAATCTTCTTGGAGGATTGATATTTGGACTTGTTTGATCTGATCAACCTCTAATTTATTGATTAACTTGGAAATTGATTGGTTTGGATCCACCTCTGACTTGATGATCGGTTTGGATCGACCTCTAGCTTGTTGATTAGTTTGGATCGGCCTTTGGTTTGTTGATCAGTTGACCCTTGGCCTTTGGTTTGTTGATCGGTTGGCCCTTGGCTTTTTGATCTATTTACTTTGATCCGAGGGCTGACGAACTTATTATCAAATCAGGGGAGATTAGTCTTCAATTTGTAAATGGTGAAGAGACGATCAACTTGGTGAAGAAGGGATGATCAATTTGTTGAAAAAAAGATGATCAATTTGTTGAAGTAGAGATGCTCAATTTGTTGAAGTAGAGATGCTCAATTTGTTGAAGAAAATGCGATTAATTCGTTGGAGAAGAGATGCACAATTTGTTGATGAAGATGTAGTCAATTTGTTGAAATCTTCTAGTCTTTGATTTATTGAAATCTTCTAGTCTTTGATGAATGTTAAAATTCTCAGAATTCTCTGATTTATGAATATCTGACTCTCTGCCTCAAGTGATGAGTGACTTTCTCTATTTATAGAATTTTGAGAGACTCTATATGGGCTTGGACCCAATTTATTTAATAAACTCAGGATGAGTTAGCTTCTGGCTAAATTGCCACATTACATAATTTCATTGGATAAGTTGACATTGGTAGATGAATCAATGGTTGGACAAGTGGTGTCATTTGATTTACCAACTTTCATGTCTTTAATTTTAATTTGAAGACACATTTAAATTTGTAATTGATCTCAAATTTATTAATCGATGTGTCAATTTGTGATTGGCCAAAATTTTGACTTTTAACCTCATGCAATCAGGTAGACACAGGTAAAATAGAAATTACATAATACAGTTTACTGCCATATTTGCAAAAATATATATTGTGATATATTTACAAAATCATAAAAACAAATTGCTACCCATTACAATGGTACCATTTTTGTTTTATTTTTCAAACAAAGAGCCTAAAAGCTTTAACCGGCTATTTCATCAAAATTTTCAAAAACTAGGTGGCCCTTGAGTGACGGGCTTCGAAGGAAAGCCCATAAACAATAACCCATCATAGCAACAATGGCAACACTTCCTAGGGTTTCATCACTATAACTCAAGGTTTCATCACTGTCTTATTCTCTCCTCTTTGCCGAGCCTTCGTCTTGCTGCTCTCAGCTACGCTTCGCTTCACTTCATCCATTCGTCACCGACAATGGCGGACAAGGCAGTCACCATACGAACCAGAAAGTTCATGACCAACCGGCTTCTCTCCAGGAAGCAATTTGTGAGTTTCCTTCTTTTCTTTTCTACGTTTTATCAATAACGAAAGATTGGTTTTCAACTTTGAAGTCTTTCTCGGATTAGTTTCGTTAAGGAGAAATTCAGTATTCGAACCTCATATCTCTATTACGCGTTTCCTTTGTTTTATAAATTGGTTTGAAGTATAAGATTCAACAACCCATATTCAAATTAATGCAATCCTGTTGAATAAGTTTCTTTTTAATGATTCCCATTTGACCCCAGTTTTCATTTGCAGCCCAATCTAATTCTATAGTTTGATATTCGTTCTCTTTGTCGACATTTATCCCATTCATATCTGCTAAGCTTCTGTTATAACTAGCTGACAATTGTATATATGCTTTGTGATTTTGTGCTTTTTCTTTGAATCTTCACAATGTACAAGTCTTGTGTGAATGGTGGCTGCCTATCTGTGATTTCATATCCTATGAGATTTCTTTCGCGACCAGAAATTTAGTAGGGTTAGACCGGACACCCGCAGATGTTAAAAGCATGTTAAAACATGCTACGCTTTTCTTTTGTGCTTAGATGAACTGTACTGGTGTTCGTGTCCTTTTGTGCTCTACTGGCTTGGGAGTTCTACGCTTAAAACCACAACACCATGACAATGGAGTCCAATACTTCCAATTTATAGGCTTTAGTTCTTACTGTTCCTTTTCTGGATTGATGCAGATCATTGATGTTCTACACCCAGGAAGACCAAACGTCTCTAAGGTAAGTCGATTTTAGTTATGGAAGTGATTGTGCTTCTGCTTTAGAGTAATGCTTTCATAATGAATGAATCCAGCAATGTCTTACGGCCAATTTATCACATTTCATATTTAGAATTTATGCTTTCTACGGATAGATTGTTGAGTTTAATGGTTTTGAGTTTCAAGTCTGGTTGCATGTTAAATTATCTGCTCATTTGATTTCACTTTTGTCTTTTTGATTTGAAGGCAGAGCTGAAGGAAAAGTTAGCAAGAATATATGATGTGAAGGATGCGAATGCAATTTTTGTCTTTAAGTTTCGAACTCACTTTGGAGGTGGAAAATCAACTGGGTTTGGTTTGATTTATGATTCTGTTGAAAATGCCAAAAAATATGAGCCCAAGTACAGGCTCATCAGGGTAATTTCTTTTCCTTGTTATTTACACCGCCTTTTCCCTTTTGTTCCATTGTAGGCTTTTACCTGCACACATTCTATTGGATGAAATATTCTAATCAGTACTGTTAACTAATGGATTCAATATTACTAGTTTAAAAAGTATGGACACTGCTTTGAGCACTGTGTGTTGAACATGCGTGGTGTACACATGTTGAGTTCTGATTTGGCAGGGGACAAAGAAATGTAGGTGTGGAGGGTTAGGGGGGAATATTAGGATGCAATTGGTTCATATGGAGGACTTGCGTAGAGAATGAAGTAACAAGACAAAAATTGATAGTTCTTTTATGAATAGAGGAATATTGCATCATTTTATTTGGAGAAGAAAAAAGATGAAACCCTATTGAAACTAAGCAAAAGGGGGGGGGGGGTAGGGGTGGACTTTTCGGTTTCACTTGAATGTATCATTAGGAGTGATGTGGGAAAATATAATGTTTGAGATGCAGGTTTCTTTGTTTGAAATATTTGAGGGATACTTGACTTCAATTTGCCGTCAAAGATGTTTAGTCTTTATAAGAGTCATATTTGATAAAAGGCCATGAATAATTATATCTTTACAATTATGGTTCACTATTTTCAAAATAGTTCTGTCTGGATGCAAAAGAGTTGGGTTATTTCTGAAATCAAGTGTTATTTTCTTTACAGAATGGACTTGACACTAAAGTAGAAAAATCAAGGAAGCAAATGAAGGAGAGGAAGAACAGAGCCAAGAAGATTCGTGGAGTAAAGAAAGTGAGTAAACCCTTCTTTTTATTGTTTGAGTTTCTAAATTTGAAAATAGCAGTGTTTAATATTAGCTGCAACTTCCCCTTTCGTTTTACCAGACAAAGGCCTCAGACGCTGCCAAGGCTGGAAAGAAGAAATGA

mRNA sequence

ATGGAACTTGGTGTTCGTGAAGATGTGAAAACTATTGTCAATACGGGCATAAGAATGTTTTATGCTCGAATAAGTACACGATTTCGACTTGTTATGTGGGTATCCGTTAAGCAACAATGGCAACACTTCCTAGGGTTTCATCACTATAACTCAAGGTTTCATCACTGTCTTATTCTCTCCTCTTTGCCGAGCCTTCGTCTTGCTGCTCTCAGCTACGCTTCGCTTCACTTCATCCATTCGTCACCGACAATGGCGGACAAGGCAGTCACCATACGAACCAGAAAGTTCATGACCAACCGGCTTCTCTCCAGGAAGCAATTTATCATTGATGTTCTACACCCAGGAAGACCAAACGTCTCTAAGGCAGAGCTGAAGGAAAAGTTAGCAAGAATATATGATGTGAAGGATGCGAATGCAATTTTTGTCTTTAAGTTTCGAACTCACTTTGGAGGTGGAAAATCAACTGGGTTTGGTTTGATTTATGATTCTGTTGAAAATGCCAAAAAATATGAGCCCAAGTACAGGCTCATCAGGAATGGACTTGACACTAAAGTAGAAAAATCAAGGAAGCAAATGAAGGAGAGGAAGAACAGAGCCAAGAAGATTCGTGGAGTAAAGAAAACAAAGGCCTCAGACGCTGCCAAGGCTGGAAAGAAGAAATGA

Coding sequence (CDS)

ATGGAACTTGGTGTTCGTGAAGATGTGAAAACTATTGTCAATACGGGCATAAGAATGTTTTATGCTCGAATAAGTACACGATTTCGACTTGTTATGTGGGTATCCGTTAAGCAACAATGGCAACACTTCCTAGGGTTTCATCACTATAACTCAAGGTTTCATCACTGTCTTATTCTCTCCTCTTTGCCGAGCCTTCGTCTTGCTGCTCTCAGCTACGCTTCGCTTCACTTCATCCATTCGTCACCGACAATGGCGGACAAGGCAGTCACCATACGAACCAGAAAGTTCATGACCAACCGGCTTCTCTCCAGGAAGCAATTTATCATTGATGTTCTACACCCAGGAAGACCAAACGTCTCTAAGGCAGAGCTGAAGGAAAAGTTAGCAAGAATATATGATGTGAAGGATGCGAATGCAATTTTTGTCTTTAAGTTTCGAACTCACTTTGGAGGTGGAAAATCAACTGGGTTTGGTTTGATTTATGATTCTGTTGAAAATGCCAAAAAATATGAGCCCAAGTACAGGCTCATCAGGAATGGACTTGACACTAAAGTAGAAAAATCAAGGAAGCAAATGAAGGAGAGGAAGAACAGAGCCAAGAAGATTCGTGGAGTAAAGAAAACAAAGGCCTCAGACGCTGCCAAGGCTGGAAAGAAGAAATGA

Protein sequence

MELGVREDVKTIVNTGIRMFYARISTRFRLVMWVSVKQQWQHFLGFHHYNSRFHHCLILSSLPSLRLAALSYASLHFIHSSPTMADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK

Homology

[Close]

BLAST of Clc06G09920 vs. NCBI nr
Match: KAG6588329.1 (40S ribosomal protein S24-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 273.5 bits (698), Expect = 1.6e-69
Identity = 147/156 (94.23%), Postives = 150/156 (96.15%), Query Frame = 0


Query: 67  LAALSYASLHFI--HSSPTMADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAEL 126
           L  L +ASLHF   +SSPTMADKAVTIRTRKFMTNRLLSRKQF+IDVLHPGRPNVSKAEL
Sbjct: 17  LVLLRFASLHFTSSYSSPTMADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAEL 76

Query: 127 KEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTK 186
           KEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTK
Sbjct: 77  KEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTK 136

Query: 187 VEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK 221
           VEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK
Sbjct: 137 VEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK 172

[Close]

BLAST of Clc06G09920 vs. NCBI nr
Match: XP_008462725.1 (PREDICTED: 40S ribosomal protein S24-1 [Cucumis melo] >XP_038878465.1 40S ribosomal protein S24-1-like [Benincasa hispida] >KAA0062600.1 40S ribosomal protein S24-1 [Cucumis melo var. makuwa] >TYK29716.1 40S ribosomal protein S24-1 [Cucumis melo var. makuwa])

HSP 1 Score: 258.5 bits (659), Expect = 5.4e-65
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 84  MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 143
           MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 60

Query: 144 KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 203
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 204 GVKKTKASDAAKAGKKK 221
           GVKKTKASDAAKAGKKK
Sbjct: 121 GVKKTKASDAAKAGKKK 137

[Close]

BLAST of Clc06G09920 vs. NCBI nr
Match: XP_022933090.1 (40S ribosomal protein S24-1-like [Cucurbita moschata] >XP_022972142.1 40S ribosomal protein S24-1-like [Cucurbita maxima] >XP_023529307.1 40S ribosomal protein S24-1-like [Cucurbita pepo subsp. pepo] >KAG7020892.1 40S ribosomal protein S24-2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 258.1 bits (658), Expect = 7.0e-65
Identity = 136/137 (99.27%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 84  MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 143
           MADKAVTIRTRKFMTNRLLSRKQF+IDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 60

Query: 144 KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 203
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 204 GVKKTKASDAAKAGKKK 221
           GVKKTKASDAAKAGKKK
Sbjct: 121 GVKKTKASDAAKAGKKK 137

[Close]

BLAST of Clc06G09920 vs. NCBI nr
Match: XP_008455742.1 (PREDICTED: 40S ribosomal protein S24-1 [Cucumis melo] >XP_038889626.1 40S ribosomal protein S24-1 [Benincasa hispida] >ADN33912.1 40S ribosomal protein s24 [Cucumis melo subsp. melo] >KAA0063627.1 40S ribosomal protein S24-1 [Cucumis melo var. makuwa] >TYK18399.1 40S ribosomal protein S24-1 [Cucumis melo var. makuwa])

HSP 1 Score: 256.5 bits (654), Expect = 2.0e-64
Identity = 136/137 (99.27%), Postives = 136/137 (99.27%), Query Frame = 0


Query: 84  MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 143
           MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKD NAIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVF 60

Query: 144 KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 203
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 204 GVKKTKASDAAKAGKKK 221
           GVKKTKASDAAKAGKKK
Sbjct: 121 GVKKTKASDAAKAGKKK 137

[Close]

BLAST of Clc06G09920 vs. NCBI nr
Match: XP_004142519.1 (40S ribosomal protein S24-1 [Cucumis sativus] >KGN66808.1 hypothetical protein Csa_007581 [Cucumis sativus])

HSP 1 Score: 256.5 bits (654), Expect = 2.0e-64
Identity = 135/137 (98.54%), Postives = 136/137 (99.27%), Query Frame = 0


Query: 84  MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 143
           MADKAVTIRTRKFMTNRLLSRKQF+IDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 60

Query: 144 KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 203
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 204 GVKKTKASDAAKAGKKK 221
           GVKKTKASDAAK GKKK
Sbjct: 121 GVKKTKASDAAKGGKKK 137

[Close]

BLAST of Clc06G09920 vs. ExPASy Swiss-Prot
Match: Q9SS17 (40S ribosomal protein S24-1 OS=Arabidopsis thaliana OX=3702 GN=RPS24A PE=2 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 2.1e-59
Identity = 118/132 (89.39%), Postives = 128/132 (96.97%), Query Frame = 0


Query: 84  MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 143
           MA+KAVTIRTRKFMTNRLLSRKQF+IDVLHPGR NVSKAELKEKLAR+Y+VKD NAIFVF
Sbjct: 1   MAEKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVF 60

Query: 144 KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 203
           KFRTHFGGGKS+GFGLIYD+VE+AKK+EPKYRLIRNGLDTK+EKSRKQ+KERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSSGFGLIYDTVESAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIR 120

Query: 204 GVKKTKASDAAK 216
           GVKKTKA DA K
Sbjct: 121 GVKKTKAGDAKK 132

[Close]

BLAST of Clc06G09920 vs. ExPASy Swiss-Prot
Match: Q8LC83 (40S ribosomal protein S24-2 OS=Arabidopsis thaliana OX=3702 GN=RPS24B PE=2 SV=2)

HSP 1 Score: 224.6 bits (571), Expect = 1.1e-57
Identity = 114/132 (86.36%), Postives = 125/132 (94.70%), Query Frame = 0


Query: 84  MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 143
           MA+KAVTIRTR FMTNRLL+RKQF+IDVLHPGR NVSKAELKEKLAR+Y+VKD NAIF F
Sbjct: 1   MAEKAVTIRTRNFMTNRLLARKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFCF 60

Query: 144 KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 203
           KFRTHFGGGKS+G+GLIYD+VENAKK+EPKYRLIRNGLDTK+EKSRKQ+KERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSSGYGLIYDTVENAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIR 120

Query: 204 GVKKTKASDAAK 216
           GVKKTKA D  K
Sbjct: 121 GVKKTKAGDTKK 132

[Close]

BLAST of Clc06G09920 vs. ExPASy Swiss-Prot
Match: Q962Q6 (40S ribosomal protein S24 OS=Spodoptera frugiperda OX=7108 GN=RpS24 PE=2 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 3.4e-38
Identity = 83/132 (62.88%), Postives = 104/132 (78.79%), Query Frame = 0


Query: 84  MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 143
           M +   TIRTRKFMTNRLL+RKQ + DVLHPG+P VSK E++EKLA++Y V   + +FVF
Sbjct: 1   MTEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKV-TPDVVFVF 60

Query: 144 KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 203
            F+T+FGGGKSTGF LIYD+++ AKK+EPK+RL R+GL  K   +RKQ KERKNR KK+R
Sbjct: 61  GFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVR 120

Query: 204 GVKKTKASDAAK 216
           G KK+K   AAK
Sbjct: 121 GTKKSKVGAAAK 131

[Close]

BLAST of Clc06G09920 vs. ExPASy Swiss-Prot
Match: Q56JU9 (40S ribosomal protein S24 OS=Bos taurus OX=9913 GN=RPS24 PE=2 SV=2)

HSP 1 Score: 153.3 bits (386), Expect = 3.2e-36
Identity = 85/132 (64.39%), Postives = 100/132 (75.76%), Query Frame = 0


Query: 89  VTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTH 148
           VTIRTRKFMTNRLL RKQ +IDVLHPG+  V K E++EKLA++Y     + IFVF FRTH
Sbjct: 5   VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKT-TPDVIFVFGFRTH 64

Query: 149 FGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKT 208
           FGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG  K 
Sbjct: 65  FGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGTAKA 124

Query: 209 KASDAAKAGKKK 221
                  AGKKK
Sbjct: 125 NVG----AGKKK 131

[Close]

BLAST of Clc06G09920 vs. ExPASy Swiss-Prot
Match: Q5RAQ8 (40S ribosomal protein S24 OS=Pongo abelii OX=9601 GN=RPS24 PE=2 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 3.2e-36
Identity = 85/132 (64.39%), Postives = 100/132 (75.76%), Query Frame = 0


Query: 89  VTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTH 148
           VTIRTRKFMTNRLL RKQ +IDVLHPG+  V K E++EKLA++Y     + IFVF FRTH
Sbjct: 5   VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKT-TPDVIFVFGFRTH 64

Query: 149 FGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKT 208
           FGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG  K 
Sbjct: 65  FGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGTAKA 124

Query: 209 KASDAAKAGKKK 221
                  AGKKK
Sbjct: 125 NVG----AGKKK 131

[Close]

BLAST of Clc06G09920 vs. ExPASy TrEMBL
Match: A0A5D3E1B6 (40S ribosomal protein S24 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3607G00280 PE=3 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 2.6e-65
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 84  MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 143
           MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 60

Query: 144 KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 203
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 204 GVKKTKASDAAKAGKKK 221
           GVKKTKASDAAKAGKKK
Sbjct: 121 GVKKTKASDAAKAGKKK 137

[Close]

BLAST of Clc06G09920 vs. ExPASy TrEMBL
Match: A0A1S3CHL4 (40S ribosomal protein S24 OS=Cucumis melo OX=3656 GN=LOC103501023 PE=3 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 2.6e-65
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 84  MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 143
           MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 60

Query: 144 KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 203
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 204 GVKKTKASDAAKAGKKK 221
           GVKKTKASDAAKAGKKK
Sbjct: 121 GVKKTKASDAAKAGKKK 137

[Close]

BLAST of Clc06G09920 vs. ExPASy TrEMBL
Match: A0A6J1I401 (40S ribosomal protein S24 OS=Cucurbita maxima OX=3661 GN=LOC111470770 PE=3 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 3.4e-65
Identity = 136/137 (99.27%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 84  MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 143
           MADKAVTIRTRKFMTNRLLSRKQF+IDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 60

Query: 144 KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 203
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 204 GVKKTKASDAAKAGKKK 221
           GVKKTKASDAAKAGKKK
Sbjct: 121 GVKKTKASDAAKAGKKK 137

[Close]

BLAST of Clc06G09920 vs. ExPASy TrEMBL
Match: A0A6J1F3Y6 (40S ribosomal protein S24 OS=Cucurbita moschata OX=3662 GN=LOC111439823 PE=3 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 3.4e-65
Identity = 136/137 (99.27%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 84  MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 143
           MADKAVTIRTRKFMTNRLLSRKQF+IDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 60

Query: 144 KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 203
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 204 GVKKTKASDAAKAGKKK 221
           GVKKTKASDAAKAGKKK
Sbjct: 121 GVKKTKASDAAKAGKKK 137

[Close]

BLAST of Clc06G09920 vs. ExPASy TrEMBL
Match: A0A5D3D4C1 (40S ribosomal protein S24 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G001230 PE=3 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 9.9e-65
Identity = 136/137 (99.27%), Postives = 136/137 (99.27%), Query Frame = 0


Query: 84  MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 143
           MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKD NAIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVF 60

Query: 144 KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 203
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 204 GVKKTKASDAAKAGKKK 221
           GVKKTKASDAAKAGKKK
Sbjct: 121 GVKKTKASDAAKAGKKK 137

[Close]

BLAST of Clc06G09920 vs. TAIR 10
Match: AT3G04920.1 (Ribosomal protein S24e family protein )

HSP 1 Score: 230.3 bits (586), Expect = 1.5e-60
Identity = 118/132 (89.39%), Postives = 128/132 (96.97%), Query Frame = 0


Query: 84  MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 143
           MA+KAVTIRTRKFMTNRLLSRKQF+IDVLHPGR NVSKAELKEKLAR+Y+VKD NAIFVF
Sbjct: 1   MAEKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVF 60

Query: 144 KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 203
           KFRTHFGGGKS+GFGLIYD+VE+AKK+EPKYRLIRNGLDTK+EKSRKQ+KERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSSGFGLIYDTVESAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIR 120

Query: 204 GVKKTKASDAAK 216
           GVKKTKA DA K
Sbjct: 121 GVKKTKAGDAKK 132

[Close]

BLAST of Clc06G09920 vs. TAIR 10
Match: AT5G28060.1 (Ribosomal protein S24e family protein )

HSP 1 Score: 224.6 bits (571), Expect = 8.0e-59
Identity = 114/132 (86.36%), Postives = 125/132 (94.70%), Query Frame = 0


Query: 84  MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 143
           MA+KAVTIRTR FMTNRLL+RKQF+IDVLHPGR NVSKAELKEKLAR+Y+VKD NAIF F
Sbjct: 1   MAEKAVTIRTRNFMTNRLLARKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFCF 60

Query: 144 KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 203
           KFRTHFGGGKS+G+GLIYD+VENAKK+EPKYRLIRNGLDTK+EKSRKQ+KERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSSGYGLIYDTVENAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIR 120

Query: 204 GVKKTKASDAAK 216
           GVKKTKA D  K
Sbjct: 121 GVKKTKAGDTKK 132

The following BLAST results are available for this feature:

BLAST of Clc06G09920 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6588329.1	1.6e-69	94.23	40S ribosomal protein S24-2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_008462725.1	5.4e-65	100.00	PREDICTED: 40S ribosomal protein S24-1 [Cucumis melo] >XP_038878465.1 40S riboso...	[more]
XP_022933090.1	7.0e-65	99.27	40S ribosomal protein S24-1-like [Cucurbita moschata] >XP_022972142.1 40S riboso...	[more]
XP_008455742.1	2.0e-64	99.27	PREDICTED: 40S ribosomal protein S24-1 [Cucumis melo] >XP_038889626.1 40S riboso...	[more]
XP_004142519.1	2.0e-64	98.54	40S ribosomal protein S24-1 [Cucumis sativus] >KGN66808.1 hypothetical protein C...	[more]

BLAST of Clc06G09920 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SS17	2.1e-59	89.39	40S ribosomal protein S24-1 OS=Arabidopsis thaliana OX=3702 GN=RPS24A PE=2 SV=1	[more]
Q8LC83	1.1e-57	86.36	40S ribosomal protein S24-2 OS=Arabidopsis thaliana OX=3702 GN=RPS24B PE=2 SV=2	[more]
Q962Q6	3.4e-38	62.88	40S ribosomal protein S24 OS=Spodoptera frugiperda OX=7108 GN=RpS24 PE=2 SV=1	[more]
Q56JU9	3.2e-36	64.39	40S ribosomal protein S24 OS=Bos taurus OX=9913 GN=RPS24 PE=2 SV=2	[more]
Q5RAQ8	3.2e-36	64.39	40S ribosomal protein S24 OS=Pongo abelii OX=9601 GN=RPS24 PE=2 SV=1	[more]

BLAST of Clc06G09920 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E1B6	2.6e-65	100.00	40S ribosomal protein S24 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3CHL4	2.6e-65	100.00	40S ribosomal protein S24 OS=Cucumis melo OX=3656 GN=LOC103501023 PE=3 SV=1	[more]
A0A6J1I401	3.4e-65	99.27	40S ribosomal protein S24 OS=Cucurbita maxima OX=3661 GN=LOC111470770 PE=3 SV=1	[more]
A0A6J1F3Y6	3.4e-65	99.27	40S ribosomal protein S24 OS=Cucurbita moschata OX=3662 GN=LOC111439823 PE=3 SV=...	[more]
A0A5D3D4C1	9.9e-65	99.27	40S ribosomal protein S24 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]

BLAST of Clc06G09920 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G04920.1	1.5e-60	89.39	Ribosomal protein S24e family protein	[more]
AT5G28060.1	8.0e-59	86.36	Ribosomal protein S24e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001976	Ribosomal protein S24e	PFAM	PF01282	Ribosomal_S24e	coord: 109..186 e-value: 6.4E-35 score: 119.0
IPR001976	Ribosomal protein S24e	PANTHER	PTHR10496	40S RIBOSOMAL PROTEIN S24	coord: 84..220
IPR001976	Ribosomal protein S24e	HAMAP	MF_00545	Ribosomal_S24e	coord: 87..189 score: 19.603432
None	No IPR available	GENE3D	3.30.70.3370		coord: 82..215 e-value: 2.6E-58 score: 197.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 185..220
None	No IPR available	PANTHER	PTHR10496:SF18	40S RIBOSOMAL PROTEIN S24	coord: 84..220
IPR018098	Ribosomal S24e conserved site	PROSITE	PS00529	RIBOSOMAL_S24E	coord: 149..171
IPR012678	Ribosomal protein L23/L15e core domain superfamily	SUPERFAMILY	54189	Ribosomal proteins S24e, L23 and L15e	coord: 89..191

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc06G09920.1	Clc06G09920.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome