Clc06G09830 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGTTAAGGTACGTTACACGTACAATAACAAGATAGTTGAGAAGGATGTGTACGAAACAGCTTTGATTATTTGTGACATAAAGAGTAAAAGCATGGAACCATTTGAGTTGATGGAGTTGATGCGGCGTTTGAAAACTCGATTTCCAGGTTCAACTTCCACTACTTCTATAGGAAATGAGCAACCACCTGTAATCAACAACAATCAAAATGTGGCAGCGGTGCTTGGTGGGGCTGGGGATAGAATTCTTCGGCTACTACCTGGTGGAGCTTTGGATAGACTTCCGCCGGTGGCGGTGATCAGAAACGTAATTGGAGTGTGTAGTCGGGCGTTTGTGAAGCAATTAACAAAAAGCGATTTGACAGATGGGTTAGGGAGATTGGCACTTCATAAGGAATTTGTGAATCGTGATTTGGTTCCAATGTTCAATGATAATGAGGATTTGGTTGAGGGAATTGATGTTATAGCTTTTGATAGTGAAGGGAGGCAATACGACATGACGTTCAAGCTTTGGACTTCTAAGCTTTACGTGCTCACCAAAAGTTGGAAGGAGTTTTACAAGACCAATAATTTGACACAATCTGGTGAGTACGTCACTGTTTGGATGTTTCGACATGTCGTCAATCACAATCTTTGCTTTGCTATTATTCAAGGAAGGTTTGAACGACCTTGAGCTTCGGGGTAACGTGCCTCCATTATTGCGTCCTCTCCAAATGGACTACGTTTTATCATTACCACATTATACTTTTTTTTTTTTTTTTTTTAAATTATTATTATTATTTATTACTATTCTTTTAGAATTAGTGAAATAAGGGAGATATTGTTTGTCCCATATAGTTCTTTACTTTAGTTACATATCAATAAAATTTGCGTATTCGCAGTTCCTTCTTTCCATGCTTTTTTTTTTTTTTTTCTCATAATGTGATTGTGTATTTAGTTTTAGTTTTATTTTTAAAAAATTATTATAAATACAAAAAATATCAAACTATTTACAAATATAGGAATATTTCATTAAACTCACAATATTCAATTCTCACAATACAATAAAAGAATAGATGTACAAATTTGAACTCACAATATTCAATCCTCACAATACAATAAAAGTGTCTCTCTAGAATAAGATGAAAAGAAAGAAATTTGAGAGCTTGGAGACAAAGCAACAATGATGGTCTGTTTCAATTTTTGAGGATTGTAAAGTTGAAAAAGTTGGAAAAACTTTTTAAAGACGATGAAGTTTAAAAAGGGAGAGAAGTAGGGTAAAAGTTAGATTTTAATTTGGGTCATTGGATTGATCAAAAAGTAAAACAAAAGGTGGAGATTAAAAGTAAATTTTTTATTTTTTTATTTTTTATTATTAGTTTAAAGATAACTAGTCGTTAGACACAAACATAAAATAATATTAAATTTATTTTCTTTCTAAATTTTTTTTTAAAAATTGATGCGCACTTTTAGTGTTAACCGCAAGTGTACGGGTCAAGTTATAATATAAGACGGTTAAGTCCGAATATCGTTCCACTGGAGATCCAATTGTGAAGGTTTAAGTTACTTAGCTATTCTAGAGTTGAATCAATTTTATTTGAGGATTTGAATTGAAATTGTTAATTATGGAAAATATAAAATAAATAAGGAAAGTATTAAAGTGAGAAACACAAGAGTCAAAGAGAGTTATAGGGTAATGAATCCTTGTTTATTTCATCATGCAATATTATAGATTTCATGGATTTTATTGTCATTCATATGCCTAAGTCTAGAAACTTAATTCCAAGTTATTTTCTCTCAAAAACAATCATTTCTCATGCAACTCGATTGATTATTAATCTCTTAAAACCAATACAAAATTACATGGCATTAAGAATAGTCTTTAGCAACTTTTATTGTCAACCTAATTACTCTCGTGATAGAGTAACAACAATTCATTGTTATAGATCAAGTTAAACATACAGTCTCTCAATATACATCTAACCTAACATGTGAGGATGGTCAATCCACAAGAGTTAAACACAATAACAATGAAAAGCATAATCATTCCAACAAAACCATGAAAGTCTACAAGATCAACATAAATTCATAAACAAATCATCAAAACCCTAAAACTAAAGAGTTTTGCCACTCATAGCTTGAAGCAACATGTTTAAGCAAAATAAACAAAGAAAGAGTGTAAAGAAAGGGAAACTCTCCTGAAAAGAGGCTCTTGATTGAGGTAACACTGTAACGATCTCCTTGGCTCTCACGTTGGAATTCGAAGGGCACCAAGACTATCTCGAACTCTTTTCCTCTTCCTTGCAACTAACTCACTCTTTGAACTCTCACTTAATTCTCTTCTTTTTGTGCTTCTTTAGGTCTGTAACTTCATTGCTTTGCTTTGATTTTCTTTGATGATTTGAGCTGCTGGAAACCCCCAAATTTATAGAGTTTGGCCGCCCAAAAATTTACCAAAAATAACAATTTTTCATTTAAGGAAAGCTGGCGCCGCGGCGCTTGGGCTGCATCAGAAAAGTTTGCTCTCGGGTTTTAGCGTCGTGGCAGCACCGTCCAAGCGCCGCGACGCTGTCATGCGTTCAACAAGGTTGCGTTGAAGCAGCGCCATCTCAGCGATGCGGTGCTACTATGCGTCCAGAACGATGCGTTTATGTTTCAGCGCCGTCTCAGCGCCGCGGTGCTACTATGCGTCCATAACGATGCGTTTATGTTTTAGCGTCGCGGCAGCGCCGTCTTGGCGCCGCGGCGTTATCCCAAAATTCGCCCTTTTGAGTTTTTCAGCTCTTTTTCGCCGTATTCTTGCTCGGTTTTTTATCTTTTAG ATGGTTAAGGTACGTTACACGTACAATAACAAGATAGTTGAGAAGGATGTGTACGAAACAGCTTTGATTATTTGTGACATAAAGAGTAAAAGCATGGAACCATTTGAGTTGATGGAGTTGATGCGGCGTTTGAAAACTCGATTTCCAGGTTCAACTTCCACTACTTCTATAGGAAATGAGCAACCACCTGTAATCAACAACAATCAAAATGTGGCAGCGGTGCTTGGTGGGGCTGGGGATAGAATTCTTCGGCTACTACCTGGTGGAGCTTTGGATAGACTTCCGCCGGTGGCGGTGATCAGAAACGTAATTGGAGTGTGTAGTCGGGCGTTTGTGAAGCAATTAACAAAAAGCGATTTGACAGATGGGTTAGGGAGATTGGCACTTCATAAGGAATTTGTGAATCGTGATTTGGTTCCAATGTTCAATGATAATGAGGATTTGGTTGAGGGAATTGATGTTATAGCTTTTGATAGTGAAGGGAGGCAATACGACATGACGTTCAAGCTTTGGACTTCTAAGCTTTACGTGCTCACCAAAAGTTGGAAGGAGTTTTACAAGACCAATAATTTGACACAATCTGGTGAGTACGTCACTGTTTGGATGTTTCGACATGTCGTCAATCACAATCTTTGCTTTGCTATTATTCAAGGAAGGAAAGCTGGCGCCGCGGCGCTTGGGCTGCATCAGAAAAGTTTGCTCTCGGGTTTTAGCGTCGTGGCAGCACCGTCCAAGCGCCGCGACGCTGTCATGCGTTCAACAAGCGCCGTCTCAGCGCCGCGGTGCTACTATGCGTCCATAACGATGCGTTTATGTTTTAGCGTCGCGGCAGCGCCGTCTTGGCGCCGCGGCGTTATCCCAAAATTCGCCCTTTTGAGTTTTTCAGCTCTTTTTCGCCGTATTCTTGCTCGGTTTTTTATCTTTTAG ATGGTTAAGGTACGTTACACGTACAATAACAAGATAGTTGAGAAGGATGTGTACGAAACAGCTTTGATTATTTGTGACATAAAGAGTAAAAGCATGGAACCATTTGAGTTGATGGAGTTGATGCGGCGTTTGAAAACTCGATTTCCAGGTTCAACTTCCACTACTTCTATAGGAAATGAGCAACCACCTGTAATCAACAACAATCAAAATGTGGCAGCGGTGCTTGGTGGGGCTGGGGATAGAATTCTTCGGCTACTACCTGGTGGAGCTTTGGATAGACTTCCGCCGGTGGCGGTGATCAGAAACGTAATTGGAGTGTGTAGTCGGGCGTTTGTGAAGCAATTAACAAAAAGCGATTTGACAGATGGGTTAGGGAGATTGGCACTTCATAAGGAATTTGTGAATCGTGATTTGGTTCCAATGTTCAATGATAATGAGGATTTGGTTGAGGGAATTGATGTTATAGCTTTTGATAGTGAAGGGAGGCAATACGACATGACGTTCAAGCTTTGGACTTCTAAGCTTTACGTGCTCACCAAAAGTTGGAAGGAGTTTTACAAGACCAATAATTTGACACAATCTGGTGAGTACGTCACTGTTTGGATGTTTCGACATGTCGTCAATCACAATCTTTGCTTTGCTATTATTCAAGGAAGGAAAGCTGGCGCCGCGGCGCTTGGGCTGCATCAGAAAAGTTTGCTCTCGGGTTTTAGCGTCGTGGCAGCACCGTCCAAGCGCCGCGACGCTGTCATGCGTTCAACAAGCGCCGTCTCAGCGCCGCGGTGCTACTATGCGTCCATAACGATGCGTTTATGTTTTAGCGTCGCGGCAGCGCCGTCTTGGCGCCGCGGCGTTATCCCAAAATTCGCCCTTTTGAGTTTTTCAGCTCTTTTTCGCCGTATTCTTGCTCGGTTTTTTATCTTTTAG MVKVRYTYNNKIVEKDVYETALIICDIKSKSMEPFELMELMRRLKTRFPGSTSTTSIGNEQPPVINNNQNVAAVLGGAGDRILRLLPGGALDRLPPVAVIRNVIGVCSRAFVKQLTKSDLTDGLGRLALHKEFVNRDLVPMFNDNEDLVEGIDVIAFDSEGRQYDMTFKLWTSKLYVLTKSWKEFYKTNNLTQSGEYVTVWMFRHVVNHNLCFAIIQGRKAGAAALGLHQKSLLSGFSVVAAPSKRRDAVMRSTSAVSAPRCYYASITMRLCFSVAAAPSWRRGVIPKFALLSFSALFRRILARFFIF Homology
BLAST of Clc06G09830 vs. NCBI nr
Match: KAA0043114.1 (putative B3 domain-containing protein [Cucumis melo var. makuwa] >TYJ96217.1 putative B3 domain-containing protein [Cucumis melo var. makuwa]) HSP 1 Score: 253.4 bits (646), Expect = 2.4e-63 Identity = 137/244 (56.15%), Postives = 166/244 (68.03%), Query Frame = 0
BLAST of Clc06G09830 vs. NCBI nr
Match: XP_031736688.1 (uncharacterized protein LOC116402065 [Cucumis sativus]) HSP 1 Score: 250.0 bits (637), Expect = 2.7e-62 Identity = 131/232 (56.47%), Postives = 164/232 (70.69%), Query Frame = 0
BLAST of Clc06G09830 vs. NCBI nr
Match: KGN56101.1 (hypothetical protein Csa_010492 [Cucumis sativus]) HSP 1 Score: 247.7 bits (631), Expect = 1.3e-61 Identity = 134/238 (56.30%), Postives = 167/238 (70.17%), Query Frame = 0
BLAST of Clc06G09830 vs. NCBI nr
Match: KAG6589940.1 (putative B3 domain-containing protein, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 196.1 bits (497), Expect = 4.6e-46 Identity = 104/219 (47.49%), Postives = 138/219 (63.01%), Query Frame = 0
BLAST of Clc06G09830 vs. NCBI nr
Match: KAG7023605.1 (putative B3 domain-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 170.2 bits (430), Expect = 2.7e-38 Identity = 82/159 (51.57%), Postives = 110/159 (69.18%), Query Frame = 0
BLAST of Clc06G09830 vs. ExPASy Swiss-Prot
Match: Q9ZR14 (Putative B3 domain-containing protein At4g03170 OS=Arabidopsis thaliana OX=3702 GN=At4g03170 PE=3 SV=1) HSP 1 Score: 91.7 bits (226), Expect = 1.6e-17 Identity = 46/109 (42.20%), Postives = 63/109 (57.80%), Query Frame = 0
BLAST of Clc06G09830 vs. ExPASy Swiss-Prot
Match: Q9ZR15 (Putative B3 domain-containing protein At4g03160 OS=Arabidopsis thaliana OX=3702 GN=At4g03160 PE=3 SV=1) HSP 1 Score: 72.4 bits (176), Expect = 1.0e-11 Identity = 36/107 (33.64%), Postives = 55/107 (51.40%), Query Frame = 0
BLAST of Clc06G09830 vs. ExPASy Swiss-Prot
Match: Q9LM90 (B3 domain-containing protein At1g20600 OS=Arabidopsis thaliana OX=3702 GN=At1g20600 PE=2 SV=1) HSP 1 Score: 67.0 bits (162), Expect = 4.2e-10 Identity = 43/142 (30.28%), Postives = 65/142 (45.77%), Query Frame = 0
BLAST of Clc06G09830 vs. ExPASy TrEMBL
Match: A0A5D3BAS8 (Putative B3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold78209G00040 PE=4 SV=1) HSP 1 Score: 253.4 bits (646), Expect = 1.2e-63 Identity = 137/244 (56.15%), Postives = 166/244 (68.03%), Query Frame = 0
BLAST of Clc06G09830 vs. ExPASy TrEMBL
Match: A0A0A0L7L0 (TF-B3 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G073910 PE=4 SV=1) HSP 1 Score: 247.7 bits (631), Expect = 6.4e-62 Identity = 134/238 (56.30%), Postives = 167/238 (70.17%), Query Frame = 0
BLAST of Clc06G09830 vs. ExPASy TrEMBL
Match: A0A0A0LC65 (TF-B3 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G609250 PE=4 SV=1) HSP 1 Score: 184.1 bits (466), Expect = 8.8e-43 Identity = 83/122 (68.03%), Postives = 102/122 (83.61%), Query Frame = 0
BLAST of Clc06G09830 vs. ExPASy TrEMBL
Match: A0A6J1CTE7 (putative B3 domain-containing protein At4g03170 OS=Momordica charantia OX=3673 GN=LOC111014582 PE=4 SV=1) HSP 1 Score: 159.8 bits (403), Expect = 1.8e-35 Identity = 86/177 (48.59%), Postives = 108/177 (61.02%), Query Frame = 0
BLAST of Clc06G09830 vs. ExPASy TrEMBL
Match: A0A4S4EXQ7 (TF-B3 domain-containing protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_001439 PE=4 SV=1) HSP 1 Score: 136.7 bits (343), Expect = 1.6e-28 Identity = 74/213 (34.74%), Postives = 114/213 (53.52%), Query Frame = 0
BLAST of Clc06G09830 vs. TAIR 10
Match: AT4G03170.1 (AP2/B3-like transcriptional factor family protein ) HSP 1 Score: 91.7 bits (226), Expect = 1.1e-18 Identity = 46/109 (42.20%), Postives = 63/109 (57.80%), Query Frame = 0
BLAST of Clc06G09830 vs. TAIR 10
Match: AT4G03160.1 (BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT4G03170.1); Has 46 Blast hits to 46 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 4; Plants - 29; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). ) HSP 1 Score: 72.4 bits (176), Expect = 7.1e-13 Identity = 36/107 (33.64%), Postives = 55/107 (51.40%), Query Frame = 0
BLAST of Clc06G09830 vs. TAIR 10
Match: AT1G20600.1 (AP2/B3-like transcriptional factor family protein ) HSP 1 Score: 67.0 bits (162), Expect = 3.0e-11 Identity = 43/142 (30.28%), Postives = 65/142 (45.77%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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