Clc06G09765 (gene) Watermelon (cordophanus) v2

Overview
NameClc06G09765
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionCytochrome f
LocationClcChr06: 12960863 .. 12966558 (-)
RNA-Seq ExpressionClc06G09765
SyntenyClc06G09765
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGTGCAATGCTCGTTCAATATGTGCCTGTGGAGTAGGAGTATGAAGCCAAAAGCTCAACACCTCGAAGGTTCATTCAGGGTAAATAAGTAACTAACAATGAAACAAATTTGTACTGATTTTCTTTCAAAATCAAGATATATTAGAAGCAAGACATGAGCTTACTTCTTCTTCCCATGACTTCCTGTGAGCTGGAGATGGAGGCACTCAAACTTGCCCATTCTCTAGGGAACTTTAGATAGCCCAGAGACGTGCCCTTGACAAATCTTGCGTTGCCCGGTTGTTTCTATTCCAGCCAAATGTAGGGGAAGACTCTGATCCTGTCACCTCCACGACTTGAGGAAGAGCATATGGAACAAAACCACCTCCATGATCTTGTCGATTCACTAGTAAAAATCTAACCAAATAAAACAAATATCTATTGAACTAAATGTAAGAAACTACAATAACTAACGATTTTCTAAAACTTCAACTTAAACTGGAAAAAGTTAAGGAAAGTCCTTATACATTGGTTAGCCCATTAATATGCACCACGAGAATAGTGATATCATCTGTTCGAGTCTCAAATTGAAGCCAAAGTCTGTAAGACTTAACCACAATTGCAGCACAAGCATCACGCGAATCTTTATATTTAGTAACCTGGAAGATGATCGCAATTAAAGGAGCATTAGGGGGAAAACATGAAAGAGATTCCACATTATGTAGAAGGAAGCTTTATCATTCACTAATTCCTTAAGCAGTAATCAATCAAGAATTGGCAACAAGTATCACTTGCTTTGGACAAAAAACAAACACATTATGGAACTATCACTGGCAACAACAAAGAAAGGATGATCTGGTGTCAGCTCAAGAACAACAATTTCAGGTGTAACAACAACTCCAATAGTCTCAGCAATTGAGTCACCAATACTTCTTGTGAAAGTAGTGCTAGGGTACATCCCATTAGGCACCCAAAGCCTAGGAGGATCACCATCATCTCCTTCTTTAGTACCCTAGCACTGAACATCGGGGTTCTTCAGCCCCTCAATCTGATCAAGTGTAAGAACTCTAGCACCACAAAGCTTAACACGTTCGAGTTCATCAATTCGAAACGAAGTTTGGTAGATCGAGAGGTCAACAGCCACAACTTCTTTCCCTTTCTACTCTGCTATAACAACTCTTGAATCACCTGAATTAGCAACATATATAGTCCTACCTCTAACTAAGACAGTAATAGCGCTAGTACCACTCATGCTATCATCCTAGATATCAGCATGTAACTGTGAATTAGTTGTTAAGATATTTAATTGGTCTAAATGTGTATGAAAATTTGGACAAGCATCTTATAGAATATCTTGATAATGAATGACATTTATATGAGAATTCAAAAGGATTTAAGATACCTGAAATATATAAATTAAGTTTTCGACAACTATATTCAATAAAGCTATAGAAATCACTATATAGATTGAAATAATCAGAACAAATGTGGTATAGTCGCCTGAGTGGATATTTGTTAAAAGAAGGATATCAAAATAATCCAATATATTCATGTGTTTTTATAAAGAAATCACAATCAAGATTTGCTATTATAACTGTATATGTCGATTACCTAAATATACTTGGAACTCCTGAAGAGCTTTCGAAGGCAATAGAATATCTTAAGAAAGAATTTGAGATGAAAGATCTTGGAACAACAAAATTTTGCTTGAGCATTTAGCAAATGAGATATTTGTTCATCAGTCAACTTACAGGAAAATTTTAAAAAAGATTCTATATGGACAAAGCACATCCATTAGACATTCCAATAGAAGTTCGTTCACTAGATGTAATGAAAGATATATTTCAACCTCAAGATAATAATGAATAACTTCTTGGTCCTGAAGTACCATGTCTTAGTGCAATTGGTGCACTTATGTATGTTGCTAAGAATACAAGACCAGATATTGCATTTTCAGTAAATTTATTAGCTAGATACAATTCTTTTCTAGCAAAAATACATTGGAATGGAATTAAGCATATACTTCGTTATCTCCGAGGAACGATCTATATGAGTTTTTTTTTATTCAAATAAATCAAAATTTGATTTAGTTCGTTATGTAGATTATGGATATTTATCTGATCCACACAAAGTTAGATCTCAAACAGGTTATCTGTTTACATGTGGAGGAACTACTATATCTTGGCGATCAGTGAAATAGACCATAACAGCTACTTCCTCAAATCATGCTGAAATTCTTGCAATCCATGAAACTAGTAGAGAATGTGTATGACTAAGATCAATGACTCAACACATTCGTGAAACATATGGTTTGTCTTCTAGTAAAAATCCTCCAACAACATTATATGAAGACAACATAGCATGTATAGCCCAAATGAAAGGATGATATATTAAAGGAGATAGAGCAAAACATATTTCACAAAAGCTTTTATACACTCATGATCTTGAAGAAAATGTCGATACCATTGTACAACAAATTTGTTCAAAGGATAACTTGGCAGACTTATTTACAAAATCATTACCAATCGCAATCTTTGAAAAATTGGTGCAGAACATTGGAATGTGGTGACTTAGAGATCTCAAGTGATGTTTCTATTAGGGGAACAAATGTATTGTATTCTTTTAGAAGTATTAGATTATATGAAATATGTACTTTTTTTTACTTCCCTAGGATTTTTTCCCATTAGGGATTTTCCTAGTAAGGTTACGAGGCATATTTCATATATATAATGGGCATCTAAGGGGAAGTATTATGAATATTATAACAAAATAGATGTTCATTATATAACCAAGCTTAGTGTCTAAAGATGTCAAGTATTAATGTCTCACAATGACACATCCTTAGTGGCCATGAAATTTCACCACTTACTTGCCAAATTGCCTATAAATAGTGACATTTGGTGGATGTTGGAGATGCACACATTGGTGAGAAAAGAAGAGAAAAAGATTGGAGAACTTTGATTTTAATCTTCCATAAAAATCCACTTCCATTTTCTTTAATTTTTTATTTTAGTTTATTTTATATTATTTTAATATTTTAATATTATAATATCTTGATTTTCGTGCTCCTGTTTTTCCGTCATTTTGCTCCTCAATTTTACAACATTTCAAAAATTAATGTATATATGATCATTTTAGAAGAGCTTTTCTCAATATAAATATCACACCATCATTTTACTAGTTCACATTTTTCTACTAATCATTTTTATTAACTTATCAAAATTGCATTTTAAGGCAAAAAATTGCTAATCATTCTTGTACCTTTTCCTAAAAAAAAAATATAATAATGGTTCCTATATTTATCATATTTATTCTCCCAAACAAAAATATAAAAGAACACACTAAAATTAATAGTGTATCATACTCTCCCTTAATGCAAAACTAAAAAGTACAAATCGAATTGTGAATATTCAATAGAATTATTTTTCTTTGCACTTTTCTGAATTCTTTTTTTGAAGTAATATGGTTAGGTTTTGAAAAAATAAAGTGGATCTAACATAGAATACAAATATCAAGACGATGTTCTAATATGACGACTTCGCGTCTCAACCATTGAAGTCTGTATAATGACTTTGTCCTCTTCGCCTTACTTATTCCTTCGTCCTCTGAGCCTATCGGCATCTTATTCGCCTTTTCTCAAGAATGGAAAAAAAAAAAAAAAAGATCCTATTCTTTGAGAAGCAACAACATTCTCATCTTCCAAACATCTACATTTAGAGGTTCCATTTTGTGATCCTTGACAATCGTATGCGTTAATGCTGTAATCATATCAGCAACTATAGATCCAAAAGATTGTATCGCTACCATATCTGCATAACCTGGACTCTCATACCAGATGATAACAATCTTTAGCTGAAAGAAAGAACAAATTTCTAGGAATGTGCAGAGCTGAGACCTGCTCGTAGGGAAAATGGAATTTCCACAATGACTGCAAACCCCTTCTGATAACATTTGAGAATACAAATTTTTGTTGTACCCCAAAAATGGATTTTTGTTATAATAATTAGTGAAAAAAAAATGATTCTGGTGATAACAGACCAAAAAGGGCATGAGCTGTGGGCTTTTTTATAGATGTTGAAGAGGTGAGTAAGGGGTGAGAAGGTGCCCCTGGAGCTGGGGAAGTGAAAGTCGGACGTCTGGTGTTCCGTATCACTCATGATATATATACTAACTTGGGTACCCGTTTCAAATGCATATCCCATTTTTGCATAACAGGGTTATGAAAATCCACGAGAAGCAATCGGCCGTATTGTCTGCGCCAACTGCCATTTAGCTAATAAGCCCGTGGATATCGAGGTTCCACAAGCGGTACTTGCGTTCCAGTCACCCGGGGAAGAGTTGAGTTGTGCTTCCATCAATACAGAGCCAATTCCAATAGACTTATTGTAGGGTCCCATTGGCGTGCATCCAGTAGGAATTGAACCTACGAATTCGCCAACTCATCAAAAAAAGAAAAAATAATAAATAAACTATGTTGTGTAACTTGATTCCAAAAATGAAATGTCCTTTGAATCGCTGAAGAATGAATGACCTTATAATGCCCTTTATTTAAATTTTATTCCAACTAATTAGATTTTCTGTAGTGGGTTCATTCCTAGAAAATCTTGAATAAAAAGAAAAAAGTATAGCACTATCAGATCACTCGAAACTAATTCAATATGCCTGGAACTTTTGAAGGGTAGTTCAATCACGTAATTTATACCTCGAACTGAACTGAACGAACTTGCCCTGCTCCTATAGTTTAGGGCAATAGAGTTGACTTGCTTCTTACTAACGGCTGAATCATAAGCTCCAATAACCACCCTTCCTTTTTTTTTTTTTAGTAATTTAAAAATACTATGATGGTTCTGTTGCTTTATTATTTGGTTAGTTATTCAGCAATCCCAAAGTTTCTTTTTTTTCCTTAAAACTAAATATTTCGTAGTCTTTCATAACAGAACTCATTTTTCCAATTATGAAGCATGGCTAGGCGATCCTACTCACATTGGCCCTAGTGCCCAGGTGGTTTGGCCAATAGTGGGCCAAGAAATATTGAATGGTGATGTAGGTGGGGGTTTTCGAGGAATACAAATAACTCTGGGTTTTTTCAGCTGTGACGAGCATCTGGAATAACTAGTGAATTACAACTCTATTGTACCGCAATTGGTCATCGAAGAGAAGCAAATGAAAGGCTTTCATAAAAATTCTCGTAGAATCGAGAATGAAGTTTTCATTCTGTACATGCCATATCATGAATTAGTAACTGCATCCAATCTCCAAAAAAATCTCTCTTTGATTGATCAATGTGTGATATTCCGAATCCTCATTACTAATGGAATCAAAATGATCTATGGATTGATCAGAAGATCCTTTCAATTAGCTAGAATCCGTTACTTGAACGAAACTAGGTAATCTAGTATCCTTATGCATGAAGATAATCAATTCGGTCGTTGTGGTCGGACTCTATTATGGATTTCTGACCACATTCTCCATAGGGCCCTCTTATCTCTTCCTTCTCCGAGCTCGGGTGGGAAGTACGACTTGCGTCAAACTTGTGAAAGAATACTTGCAGCGCACCTCAGTTCCTCCACCACCGCGAACCCCAGTTAGATTCAGGCATGATACACTTTTTAGTTATTGGGAGAACCCAAGTCAGAGAGTAGCTCTTCCCTTCTTTCTTTCAGGCAAGGAGGTCTCTCGAGCCTGCAGTTTGTTGCTATCGCCCGAGCAATAA

mRNA sequence

ATGGTTGTGCAATGCTCGTTCAATATGTGCCTGTGGAGTAGGAGTATGAAGCCAAAAGCTCAACACCTCGAAGGTTCATTCAGGGGGAAGACTCTGATCCTGTCACCTCCACGACTTGAGGAAGAGCATATGGAACAAAACCACCTCCATGATCTTGTCGATTCACTAAATTGGCAACAAGTATCACTTGCTTTGGACAAAAAACAAACACATTATGGAACTATCACTGGCAACAACAAAGAAAGGATGATCTGGTGTCAGCTCAAGAACAACAATTTCAGGGTACATCCCATTAGGCACCCAAAGCCTAGGAGGATCACCATCATCTCCTTCTTTAGTACCCTAGCACTGAACATCGGGGTTCTTCAGCCCCTCAATCTGATCAAGTGTAAGAACTCTAGCACCACAAAGCTTAACACGTTCGAGTTCATCAATTCGAAACGAAGTTTGGTAGATCGAGAGGGTTATGAAAATCCACGAGAAGCAATCGGCCGTATTGTCTGCGCCAACTGCCATTTAGCTAATAAGCCCGTGGATATCGAGGTTCCACAAGCGGTACTTGCGTTCCAGTCACCCGGGGAAGAGTTGAGTTGTGCTTCCATCAATACAGAGCCAATTCCAATAGACTTATTAACTCATTTTTCCAATTATGAAGCATGGCTAGGCGATCCTACTCACATTGGCCCTAGTGCCCAGATAATCAATTCGGTCGTTGTGGTCGGACTCTATTATGGATTTCTGACCACATTCTCCATAGGGCCCTCTTATCTCTTCCTTCTCCGAGCTCGGGTGGGAAGTACGACTTGCGTCAAACTTGTGAAAGAATACTTGCAGCGCACCTCAGTTCCTCCACCACCGCGAACCCCAGTTAGATTCAGGCATGATACACTTTTTAGTTATTGGGAGAACCCAAGTCAGAGAGTAGCTCTTCCCTTCTTTCTTTCAGGCAAGGAGGTCTCTCGAGCCTGCAGTTTGTTGCTATCGCCCGAGCAATAA

Coding sequence (CDS)

ATGGTTGTGCAATGCTCGTTCAATATGTGCCTGTGGAGTAGGAGTATGAAGCCAAAAGCTCAACACCTCGAAGGTTCATTCAGGGGGAAGACTCTGATCCTGTCACCTCCACGACTTGAGGAAGAGCATATGGAACAAAACCACCTCCATGATCTTGTCGATTCACTAAATTGGCAACAAGTATCACTTGCTTTGGACAAAAAACAAACACATTATGGAACTATCACTGGCAACAACAAAGAAAGGATGATCTGGTGTCAGCTCAAGAACAACAATTTCAGGGTACATCCCATTAGGCACCCAAAGCCTAGGAGGATCACCATCATCTCCTTCTTTAGTACCCTAGCACTGAACATCGGGGTTCTTCAGCCCCTCAATCTGATCAAGTGTAAGAACTCTAGCACCACAAAGCTTAACACGTTCGAGTTCATCAATTCGAAACGAAGTTTGGTAGATCGAGAGGGTTATGAAAATCCACGAGAAGCAATCGGCCGTATTGTCTGCGCCAACTGCCATTTAGCTAATAAGCCCGTGGATATCGAGGTTCCACAAGCGGTACTTGCGTTCCAGTCACCCGGGGAAGAGTTGAGTTGTGCTTCCATCAATACAGAGCCAATTCCAATAGACTTATTAACTCATTTTTCCAATTATGAAGCATGGCTAGGCGATCCTACTCACATTGGCCCTAGTGCCCAGATAATCAATTCGGTCGTTGTGGTCGGACTCTATTATGGATTTCTGACCACATTCTCCATAGGGCCCTCTTATCTCTTCCTTCTCCGAGCTCGGGTGGGAAGTACGACTTGCGTCAAACTTGTGAAAGAATACTTGCAGCGCACCTCAGTTCCTCCACCACCGCGAACCCCAGTTAGATTCAGGCATGATACACTTTTTAGTTATTGGGAGAACCCAAGTCAGAGAGTAGCTCTTCCCTTCTTTCTTTCAGGCAAGGAGGTCTCTCGAGCCTGCAGTTTGTTGCTATCGCCCGAGCAATAA

Protein sequence

MVVQCSFNMCLWSRSMKPKAQHLEGSFRGKTLILSPPRLEEEHMEQNHLHDLVDSLNWQQVSLALDKKQTHYGTITGNNKERMIWCQLKNNNFRVHPIRHPKPRRITIISFFSTLALNIGVLQPLNLIKCKNSSTTKLNTFEFINSKRSLVDREGYENPREAIGRIVCANCHLANKPVDIEVPQAVLAFQSPGEELSCASINTEPIPIDLLTHFSNYEAWLGDPTHIGPSAQIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVGSTTCVKLVKEYLQRTSVPPPPRTPVRFRHDTLFSYWENPSQRVALPFFLSGKEVSRACSLLLSPEQ
Homology
[Close]
BLAST of Clc06G09765 vs. NCBI nr
Match: YP_010015707.1 (cytochrome f [Rhipsalis baccifera] >QOI72691.1 cytochrome f [Rhipsalis baccifera])

HSP 1 Score: 77.8 bits (190), Expect = 2.0e-10
Identity = 35/48 (72.92%), Postives = 41/48 (85.42%), Query Frame = 0 

Query: 140 TFEFINSKRSLVDREGYENPREAIGRIVCANCHLANKPVDIEVPQAVL 188
           T+ FI++   +  ++GYENPREA GRIVCANCHLANKPVDIEVPQAVL
Sbjct: 28  TWSFISNAYPIFAQQGYENPREATGRIVCANCHLANKPVDIEVPQAVL 75

[Close]
BLAST of Clc06G09765 vs. NCBI nr
Match: QWE50234.1 (cytochrome f [Biophytum sensitivum])

HSP 1 Score: 76.6 bits (187), Expect = 4.4e-10
Identity = 35/45 (77.78%), Postives = 39/45 (86.67%), Query Frame = 0 

Query: 143 FINSKRSLVDREGYENPREAIGRIVCANCHLANKPVDIEVPQAVL 188
           FI+S   +  ++GYENPREA GRIVCANCHLANKPVDIEVPQAVL
Sbjct: 31  FISSAYPIFAQQGYENPREATGRIVCANCHLANKPVDIEVPQAVL 75

[Close]
BLAST of Clc06G09765 vs. NCBI nr
Match: YP_009699908.1 (PetA [Hydrostachys polymorpha] >QEJ87923.1 PetA [Hydrostachys polymorpha])

HSP 1 Score: 76.3 bits (186), Expect = 5.7e-10
Identity = 37/55 (67.27%), Postives = 43/55 (78.18%), Query Frame = 0 

Query: 133 SSTTKLNTFEFINSKRSLVDREGYENPREAIGRIVCANCHLANKPVDIEVPQAVL 188
           S  T + T+  I+S   +  ++GYENPREA GRIVCANCHLANKPVDIEVPQAVL
Sbjct: 21  SLMTYIITWTAISSAYPIFAQQGYENPREATGRIVCANCHLANKPVDIEVPQAVL 75

[Close]
BLAST of Clc06G09765 vs. NCBI nr
Match: QFQ45797.1 (cytochrome f [Fordiophyton jinpingense])

HSP 1 Score: 76.3 bits (186), Expect = 5.7e-10
Identity = 38/77 (49.35%), Postives = 52/77 (67.53%), Query Frame = 0 

Query: 111 FFSTLALNIGVLQPLNLIKCKNSSTTKLNTFEFINSKRSLVDREGYENPREAIGRIVCAN 170
           FFS + +   ++QP+++     S    + T   I++   +  ++GYENPREA GRIVCAN
Sbjct: 8   FFSWITIKKEIIQPISV-----SFMIYIITQASISNAYPIFAQQGYENPREATGRIVCAN 67

Query: 171 CHLANKPVDIEVPQAVL 188
           CHLANKPVDIE+PQ VL
Sbjct: 68  CHLANKPVDIEIPQTVL 79

[Close]
BLAST of Clc06G09765 vs. NCBI nr
Match: QTT78306.1 (cytochrome f [Strobilanthes biocullata])

HSP 1 Score: 75.9 bits (185), Expect = 7.5e-10
Identity = 35/48 (72.92%), Postives = 40/48 (83.33%), Query Frame = 0 

Query: 140 TFEFINSKRSLVDREGYENPREAIGRIVCANCHLANKPVDIEVPQAVL 188
           T  +I+S   +  ++GYENPREA GRIVCANCHLANKPVDIEVPQAVL
Sbjct: 28  TRAYISSAYPIFAQQGYENPREATGRIVCANCHLANKPVDIEVPQAVL 75

[Close]
BLAST of Clc06G09765 vs. ExPASy Swiss-Prot
Match: B1A948 (Cytochrome f OS=Carica papaya OX=3649 GN=petA PE=3 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.8e-12
Identity = 34/48 (70.83%), Postives = 40/48 (83.33%), Query Frame = 0 

Query: 140 TFEFINSKRSLVDREGYENPREAIGRIVCANCHLANKPVDIEVPQAVL 188
           T+  I++   +  ++GYENPREA GRIVCANCHLANKPVDIEVPQAVL
Sbjct: 28  TWASISNAYPIFAQQGYENPREATGRIVCANCHLANKPVDIEVPQAVL 75

[Close]
BLAST of Clc06G09765 vs. ExPASy Swiss-Prot
Match: B1NWG3 (Cytochrome f OS=Manihot esculenta OX=3983 GN=petA PE=3 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.8e-12
Identity = 34/48 (70.83%), Postives = 40/48 (83.33%), Query Frame = 0 

Query: 140 TFEFINSKRSLVDREGYENPREAIGRIVCANCHLANKPVDIEVPQAVL 188
           T+  I++   +  ++GYENPREA GRIVCANCHLANKPVDIEVPQAVL
Sbjct: 28  TWASISNAYPIFAQQGYENPREATGRIVCANCHLANKPVDIEVPQAVL 75

[Close]
BLAST of Clc06G09765 vs. ExPASy Swiss-Prot
Match: Q68RZ3 (Cytochrome f OS=Panax ginseng OX=4054 GN=petA PE=3 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.8e-12
Identity = 34/44 (77.27%), Postives = 38/44 (86.36%), Query Frame = 0 

Query: 144 INSKRSLVDREGYENPREAIGRIVCANCHLANKPVDIEVPQAVL 188
           I+S   +  ++GYENPREA GRIVCANCHLANKPVDIEVPQAVL
Sbjct: 32  ISSAYPIFAQQGYENPREATGRIVCANCHLANKPVDIEVPQAVL 75

[Close]
BLAST of Clc06G09765 vs. ExPASy Swiss-Prot
Match: Q06RB9 (Cytochrome f OS=Jasminum nudiflorum OX=126431 GN=petA PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 3.7e-12
Identity = 33/44 (75.00%), Postives = 38/44 (86.36%), Query Frame = 0 

Query: 144 INSKRSLVDREGYENPREAIGRIVCANCHLANKPVDIEVPQAVL 188
           I+S   +  ++GYENPREA GRIVCANCHLANKPVD+EVPQAVL
Sbjct: 32  ISSAYPIFAQQGYENPREATGRIVCANCHLANKPVDVEVPQAVL 75

[Close]
BLAST of Clc06G09765 vs. ExPASy Swiss-Prot
Match: A8W3D1 (Cytochrome f OS=Cuscuta exaltata OX=476139 GN=petA PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 4.8e-12
Identity = 34/44 (77.27%), Postives = 37/44 (84.09%), Query Frame = 0 

Query: 144 INSKRSLVDREGYENPREAIGRIVCANCHLANKPVDIEVPQAVL 188
           I+S   +  + GYENPREA GRIVCANCHLANKPVDIEVPQAVL
Sbjct: 32  ISSAYPIFAQRGYENPREATGRIVCANCHLANKPVDIEVPQAVL 75

[Close]
BLAST of Clc06G09765 vs. ExPASy TrEMBL
Match: A0A7L8ZRG2 (Cytochrome f OS=Rhipsalis baccifera OX=722799 GN=petA PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 9.5e-11
Identity = 35/48 (72.92%), Postives = 41/48 (85.42%), Query Frame = 0 

Query: 140 TFEFINSKRSLVDREGYENPREAIGRIVCANCHLANKPVDIEVPQAVL 188
           T+ FI++   +  ++GYENPREA GRIVCANCHLANKPVDIEVPQAVL
Sbjct: 28  TWSFISNAYPIFAQQGYENPREATGRIVCANCHLANKPVDIEVPQAVL 75

[Close]
BLAST of Clc06G09765 vs. ExPASy TrEMBL
Match: A0A5P8GTN6 (Cytochrome f OS=Fordiophyton jinpingense OX=2565716 GN=petA PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.8e-10
Identity = 38/77 (49.35%), Postives = 52/77 (67.53%), Query Frame = 0 

Query: 111 FFSTLALNIGVLQPLNLIKCKNSSTTKLNTFEFINSKRSLVDREGYENPREAIGRIVCAN 170
           FFS + +   ++QP+++     S    + T   I++   +  ++GYENPREA GRIVCAN
Sbjct: 8   FFSWITIKKEIIQPISV-----SFMIYIITQASISNAYPIFAQQGYENPREATGRIVCAN 67

Query: 171 CHLANKPVDIEVPQAVL 188
           CHLANKPVDIE+PQ VL
Sbjct: 68  CHLANKPVDIEIPQTVL 79

[Close]
BLAST of Clc06G09765 vs. ExPASy TrEMBL
Match: A0A5C0QFL6 (Cytochrome f OS=Hydrostachys polymorpha OX=228628 GN=petA PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.8e-10
Identity = 37/55 (67.27%), Postives = 43/55 (78.18%), Query Frame = 0 

Query: 133 SSTTKLNTFEFINSKRSLVDREGYENPREAIGRIVCANCHLANKPVDIEVPQAVL 188
           S  T + T+  I+S   +  ++GYENPREA GRIVCANCHLANKPVDIEVPQAVL
Sbjct: 21  SLMTYIITWTAISSAYPIFAQQGYENPREATGRIVCANCHLANKPVDIEVPQAVL 75

[Close]
BLAST of Clc06G09765 vs. ExPASy TrEMBL
Match: A0A7G9IZ70 (Cytochrome f OS=Pouteria caimito OX=872014 GN=petA PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 3.6e-10
Identity = 35/48 (72.92%), Postives = 40/48 (83.33%), Query Frame = 0 

Query: 140 TFEFINSKRSLVDREGYENPREAIGRIVCANCHLANKPVDIEVPQAVL 188
           T  +I+S   +  ++GYENPREA GRIVCANCHLANKPVDIEVPQAVL
Sbjct: 28  TRTYISSAYPIFAQQGYENPREATGRIVCANCHLANKPVDIEVPQAVL 75

[Close]
BLAST of Clc06G09765 vs. ExPASy TrEMBL
Match: A0A2I6SS48 (Cytochrome f OS=Camellia japonica OX=4443 GN=petA PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 3.6e-10
Identity = 35/48 (72.92%), Postives = 40/48 (83.33%), Query Frame = 0 

Query: 140 TFEFINSKRSLVDREGYENPREAIGRIVCANCHLANKPVDIEVPQAVL 188
           T  +I+S   +  ++GYENPREA GRIVCANCHLANKPVDIEVPQAVL
Sbjct: 28  TRTYISSAYPIFAQQGYENPREATGRIVCANCHLANKPVDIEVPQAVL 75

[Close]
BLAST of Clc06G09765 vs. TAIR 10
Match: ATCG00540.1 (photosynthetic electron transfer A )

HSP 1 Score: 71.6 bits (174), Expect = 1.3e-12
Identity = 33/48 (68.75%), Postives = 38/48 (79.17%), Query Frame = 0 

Query: 140 TFEFINSKRSLVDREGYENPREAIGRIVCANCHLANKPVDIEVPQAVL 188
           T+  I+S   +  ++ YENPREA GRIVCANCHLANKPVDIEVPQ VL
Sbjct: 28  TWASISSAYPIFAQQNYENPREATGRIVCANCHLANKPVDIEVPQTVL 75

[Close]
BLAST of Clc06G09765 vs. TAIR 10
Match: ATCG01130.1 (Ycf1 protein )

HSP 1 Score: 64.3 bits (155), Expect = 2.1e-10
Identity = 32/33 (96.97%), Postives = 33/33 (100.00%), Query Frame = 0 

Query: 232 QIINSVVVVGLYYGFLTTFSIGPSYLFLLRARV 265
           +IINSVVVVGLYYGFLTTFSIGPSYLFLLRARV
Sbjct: 18  KIINSVVVVGLYYGFLTTFSIGPSYLFLLRARV 50

[Close]
BLAST of Clc06G09765 vs. TAIR 10
Match: ATCG01000.1 (Ycf1 protein )

HSP 1 Score: 64.3 bits (155), Expect = 2.1e-10
Identity = 32/33 (96.97%), Postives = 33/33 (100.00%), Query Frame = 0 

Query: 232 QIINSVVVVGLYYGFLTTFSIGPSYLFLLRARV 265
           +IINSVVVVGLYYGFLTTFSIGPSYLFLLRARV
Sbjct: 18  KIINSVVVVGLYYGFLTTFSIGPSYLFLLRARV 50

[Close]
BLAST of Clc06G09765 vs. TAIR 10
Match: ATMG00370.1 (Ycf1 protein )

HSP 1 Score: 64.3 bits (155), Expect = 2.1e-10
Identity = 32/33 (96.97%), Postives = 33/33 (100.00%), Query Frame = 0 

Query: 232 QIINSVVVVGLYYGFLTTFSIGPSYLFLLRARV 265
           +IINSVVVVGLYYGFLTTFSIGPSYLFLLRARV
Sbjct: 17  KIINSVVVVGLYYGFLTTFSIGPSYLFLLRARV 49

[Close]
BLAST of Clc06G09765 vs. TAIR 10
Match: AT2G07739.1 (Ycf1 protein )

HSP 1 Score: 62.0 bits (149), Expect = 1.0e-09
Identity = 31/33 (93.94%), Postives = 32/33 (96.97%), Query Frame = 0 

Query: 232 QIINSVVVVGLYYGFLTTFSIGPSYLFLLRARV 265
           +IINSVVVVGLYYGFLTTFSIGP YLFLLRARV
Sbjct: 17  KIINSVVVVGLYYGFLTTFSIGPFYLFLLRARV 49

The following BLAST results are available for this feature:
BLAST of Clc06G09765 vs. NCBI nr
Match NameE-valueIdentityDescription
YP_010015707.12.0e-1072.92cytochrome f [Rhipsalis baccifera] >QOI72691.1 cytochrome f [Rhipsalis baccifera... [more]
QWE50234.14.4e-1077.78cytochrome f [Biophytum sensitivum][more]
YP_009699908.15.7e-1067.27PetA [Hydrostachys polymorpha] >QEJ87923.1 PetA [Hydrostachys polymorpha][more]
QFQ45797.15.7e-1049.35cytochrome f [Fordiophyton jinpingense][more]
QTT78306.17.5e-1072.92cytochrome f [Strobilanthes biocullata][more]
BLAST of Clc06G09765 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
B1A9482.8e-1270.83Cytochrome f OS=Carica papaya OX=3649 GN=petA PE=3 SV=1[more]
B1NWG32.8e-1270.83Cytochrome f OS=Manihot esculenta OX=3983 GN=petA PE=3 SV=1[more]
Q68RZ32.8e-1277.27Cytochrome f OS=Panax ginseng OX=4054 GN=petA PE=3 SV=1[more]
Q06RB93.7e-1275.00Cytochrome f OS=Jasminum nudiflorum OX=126431 GN=petA PE=3 SV=1[more]
A8W3D14.8e-1277.27Cytochrome f OS=Cuscuta exaltata OX=476139 GN=petA PE=3 SV=1[more]
BLAST of Clc06G09765 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A7L8ZRG29.5e-1172.92Cytochrome f OS=Rhipsalis baccifera OX=722799 GN=petA PE=3 SV=1[more]
A0A5P8GTN62.8e-1049.35Cytochrome f OS=Fordiophyton jinpingense OX=2565716 GN=petA PE=3 SV=1[more]
A0A5C0QFL62.8e-1067.27Cytochrome f OS=Hydrostachys polymorpha OX=228628 GN=petA PE=3 SV=1[more]
A0A7G9IZ703.6e-1072.92Cytochrome f OS=Pouteria caimito OX=872014 GN=petA PE=3 SV=1[more]
A0A2I6SS483.6e-1072.92Cytochrome f OS=Camellia japonica OX=4443 GN=petA PE=3 SV=1[more]
BLAST of Clc06G09765 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00540.11.3e-1268.75photosynthetic electron transfer A [more]
ATCG01130.12.1e-1096.97Ycf1 protein [more]
ATCG01000.12.1e-1096.97Ycf1 protein [more]
ATMG00370.12.1e-1096.97Ycf1 protein [more]
AT2G07739.11.0e-0993.94Ycf1 protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002325Cytochrome fPRINTSPR00610CYTOCHROMEFcoord: 156..175
score: 87.17
coord: 176..196
score: 50.72
IPR002325Cytochrome fPROSITEPS51010CYTFcoord: 147..209
score: 16.976681
IPR024094Cytochrome f large domainPFAMPF16639Apocytochr_F_Ncoord: 153..187
e-value: 2.8E-13
score: 50.4
IPR008896Protein TIC214PFAMPF05758Ycf1coord: 236..264
e-value: 6.3E-13
score: 47.5
IPR036826Cytochrome f large domain superfamilyGENE3D2.60.40.830Cytochrome f large domaincoord: 151..190
e-value: 6.3E-16
score: 60.7
IPR036826Cytochrome f large domain superfamilySUPERFAMILY49441Cytochrome f, large domaincoord: 153..188
NoneNo IPR availablePANTHERPTHR33288FAMILY NOT NAMEDcoord: 142..188
NoneNo IPR availablePANTHERPTHR33288:SF9CYTOCHROME Fcoord: 142..188
IPR036408Photosystem I PsaA/PsaB superfamilySUPERFAMILY81558Photosystem I subunits PsaA/PsaBcoord: 213..247

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc06G09765.1Clc06G09765.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0022900 electron transport chain
biological_process GO:0015979 photosynthesis
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0031361 integral component of thylakoid membrane
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0009055 electron transfer activity
molecular_function GO:0020037 heme binding
molecular_function GO:0005506 iron ion binding