Clc06G09595 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc06G09595
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Retrotransposon protein
Location	ClcChr06: 12652947 .. 12653972 (+)
RNA-Seq Expression	Clc06G09595
Synteny	Clc06G09595

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGCATCCGGGTCACGAGCAAGAGCCGCTAAACATGTATGGACGGATGAGAAGGATAGAATCCTCGTGGAGTGTTTGGTCCAGTATGTGCAGTCTGGACACTGGCGAGCTGATAACAGGACTTTCCGACCTGGATTCCTATCAAACATACTACGGATGATGCAGCAGAAGATACCAGGGTGTTCCATACAGGTCAGCCCACATCTGAAGTCAAGGATCAGGACATTGAAGAGACAATATAGCGCGATCGCTGAAATGTTGGGCCCAGGCTGTAGTGGGTTTGGGTGGAATGCGGAGCACAAATGTATTGACTGTGAGGCGGAGATATTTGACGCATGGGTCAAGGTAATTTAATTACATGTTTTATTTATTTCTTCTTCATTTAAATTTGTATAGCCATAACATAACACAAGCCACGTTTAACAGAGTCATCCGAGTGCAAAAGGACTGCGCCATAAGTTATTTCCATACTATGGTGACTTGGCCATCGTATTCGGCAAAGATAGAGCCACAGGGAGTCATGCAACCACCACTGCAGAGGTCGGATCTGAACCTGTTATGGAAAAGGAGAACGAGGACATCCTGAACAACCAGTCCCCGGACTTTGAGAACTATATTCCTGATCCACCTTTTGCTAGCTCGCCCCCGTCAGAGGACTATTCGACTACCCCCAGTGGTAGAGGGTCTGGGAGTAGCTTGCCATCAAGGAGTAGGAGGTCCAGAAGTTCATCGATTGGAGAGTACAGCGAGGTGGTTCGTGAGGGATTCCAACTTTTGACGAAGTCTATTGACGGCATTGCATAGTGGCCTGTCATGAACGAGGACCTGGCAAGGCGTCGTCGTCGAGAACTATACGCCGAGCTGCAATCCATTCTTGGTCTGTCAGTACAGGATAGATTGACTGTTGCACGGTCATTGCTTGCAGATCCAATGTTGTTAAGCCACTTTGTGGACTTCCCACCACAGTGGAAGTACGACTATTGCATGCAAGTCCTCGGGCGACCACGGGATCCAGCACCATGA

mRNA sequence

ATGGAAGCATCCGGGTCACGAGCAAGAGCCGCTAAACATGTATGGACGGATGAGAAGGATAGAATCCTCGTGGAGTGTTTGGTCCAGTATGTGCAGTCTGGACACTGGCGAGCTGATAACAGGACTTTCCGACCTGGATTCCTATCAAACATACTACGGATGATGCAGCAGAAGATACCAGGGTGTTCCATACAGGTCAGCCCACATCTGAAGTCAAGGATCAGGACATTGAAGAGACAATATAGCGCGATCGCTGAAATGTTGGGCCCAGGCTGTAGTGGGTTTGGGTGGAATGCGGAGCACAAATGTATTGACTGTGAGGCGGAGATATTTGACGCATGGGTCAAGAGTCATCCGAGTGCAAAAGGACTGCGCCATAAGTTATTTCCATACTATGGTGACTTGGCCATCGTATTCGGCAAAGATAGAGCCACAGGGAGTCATGCAACCACCACTGCAGAGGTCGGATCTGAACCTGTTATGGAAAAGGAGAACGAGGACATCCTGAACAACCAGTCCCCGGACTTTGAGAACTATATTCCTGATCCACCTTTTGCTAGCTCGCCCCCGTCAGAGGACTATTCGACTACCCCCAGTGGTAGAGGGTCTGGGAGTAGCTTGCCATCAAGGAGTAGGAGGTCCAGAAGTTCATCGATTGGAGAGTACAGCGAGGTGTGGCCTGTCATGAACGAGGACCTGGCAAGGCGTCGTCGTCGAGAACTATACGCCGAGCTGCAATCCATTCTTGGTCTGTCAGTACAGGATAGATTGACTGTTGCACGGTCATTGCTTGCAGATCCAATGTTGTTAAGCCACTTTGTGGACTTCCCACCACAGTGGAAGTACGACTATTGCATGCAAGTCCTCGGGCGACCACGGGATCCAGCACCATGA

Coding sequence (CDS)

ATGGAAGCATCCGGGTCACGAGCAAGAGCCGCTAAACATGTATGGACGGATGAGAAGGATAGAATCCTCGTGGAGTGTTTGGTCCAGTATGTGCAGTCTGGACACTGGCGAGCTGATAACAGGACTTTCCGACCTGGATTCCTATCAAACATACTACGGATGATGCAGCAGAAGATACCAGGGTGTTCCATACAGGTCAGCCCACATCTGAAGTCAAGGATCAGGACATTGAAGAGACAATATAGCGCGATCGCTGAAATGTTGGGCCCAGGCTGTAGTGGGTTTGGGTGGAATGCGGAGCACAAATGTATTGACTGTGAGGCGGAGATATTTGACGCATGGGTCAAGAGTCATCCGAGTGCAAAAGGACTGCGCCATAAGTTATTTCCATACTATGGTGACTTGGCCATCGTATTCGGCAAAGATAGAGCCACAGGGAGTCATGCAACCACCACTGCAGAGGTCGGATCTGAACCTGTTATGGAAAAGGAGAACGAGGACATCCTGAACAACCAGTCCCCGGACTTTGAGAACTATATTCCTGATCCACCTTTTGCTAGCTCGCCCCCGTCAGAGGACTATTCGACTACCCCCAGTGGTAGAGGGTCTGGGAGTAGCTTGCCATCAAGGAGTAGGAGGTCCAGAAGTTCATCGATTGGAGAGTACAGCGAGGTGTGGCCTGTCATGAACGAGGACCTGGCAAGGCGTCGTCGTCGAGAACTATACGCCGAGCTGCAATCCATTCTTGGTCTGTCAGTACAGGATAGATTGACTGTTGCACGGTCATTGCTTGCAGATCCAATGTTGTTAAGCCACTTTGTGGACTTCCCACCACAGTGGAAGTACGACTATTGCATGCAAGTCCTCGGGCGACCACGGGATCCAGCACCATGA

Protein sequence

MEASGSRARAAKHVWTDEKDRILVECLVQYVQSGHWRADNRTFRPGFLSNILRMMQQKIPGCSIQVSPHLKSRIRTLKRQYSAIAEMLGPGCSGFGWNAEHKCIDCEAEIFDAWVKSHPSAKGLRHKLFPYYGDLAIVFGKDRATGSHATTTAEVGSEPVMEKENEDILNNQSPDFENYIPDPPFASSPPSEDYSTTPSGRGSGSSLPSRSRRSRSSSIGEYSEVWPVMNEDLARRRRRELYAELQSILGLSVQDRLTVARSLLADPMLLSHFVDFPPQWKYDYCMQVLGRPRDPAP

Homology

[Close]

BLAST of Clc06G09595 vs. NCBI nr
Match: XP_008441954.1 (PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK08388.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 210.3 bits (534), Expect = 2.3e-50
Identity = 118/302 (39.07%), Postives = 163/302 (53.97%), Query Frame = 0


Query: 6   SRARAAKHVWTDEKDRILVECLVQYVQSGHWRADNRTFRPGFLSNILRMMQQKIPGCSIQ 65
           S +RA KH WT E++   VECLV+ V SG WR+DN TF+PG+L+ + RMM +K+PG +IQ
Sbjct: 3   SLSRAPKHTWTKEEEEKFVECLVELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTNIQ 62

Query: 66  VSPHLKSRIRTLKRQYSAIAEMLGPGCSGFGWNAEHKCIDCEAEIFDAWVKSHPSAKGLR 125
            S  +   +++LK+ Y AIAEM GP CSGFGWN E +CI  E ++FD+W+KSHP+AKGL 
Sbjct: 63  ESSTIDCHVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIAERDLFDSWIKSHPAAKGLL 122

Query: 126 HKLFPYYGDLAIVFGKDRATGSHATTTAEVGSEPVMEKENEDILNNQSPDFENYIPDPPF 185
           HK FPYY DL+ VFGKDRATG+ + T   VGS         ++ N+  P  +++  D P 
Sbjct: 123 HKSFPYYDDLSYVFGKDRATGARSETFPNVGSNV------SNMFNDTIPLGDSHDEDIPT 182

Query: 186 ASS-----PPSEDYSTTPSGRGSGSSLPSRSRRSRSSSIGEYSEV--------------- 245
             S      P E +           +  S S+R R S   E  EV               
Sbjct: 183 MYSQGVHMSPDEMFGIRAGQASERRNCSSVSKRKRGSERYETVEVIRSVMEFGNEQLKAI 242

Query: 246 --WPVMNEDLARRRRRELYAELQSILGLSVQDRLTVARSLLADPMLLSHFVDFPPQWKYD 286
             WP     +    R ++  +LQ I  L  QDR  + + L      +  F+  P + K +
Sbjct: 243 ADWPKEKRAMEVEMRAQVVKQLQDIPKLRSQDRAKLMQILFRSLEAIEGFLSIPTELKLE 298

[Close]

BLAST of Clc06G09595 vs. NCBI nr
Match: XP_030483301.1 (uncharacterized protein LOC115699898 [Cannabis sativa])

HSP 1 Score: 204.5 bits (519), Expect = 1.2e-48
Identity = 115/296 (38.85%), Postives = 171/296 (57.77%), Query Frame = 0


Query: 12  KHVWTDEKDRILVECLVQYVQSGHWRADNRTFRPGFLSNILRMMQQKIPGCSIQVSPHLK 71
           KH WT  +D  LVECLV    SG W+ADN TF+PG+L  + +MM  +IP   I+  PH+ 
Sbjct: 14  KHQWTSIQDSKLVECLVDMCNSGKWKADNGTFKPGYLQQLEKMMNDRIPNSGIKAQPHID 73

Query: 72  SRIRTLKRQYSAIAEMLGPGCSGFGWNAEHKCIDCEAEIFDAWVKSHPSAKGLRHKLFPY 131
           SR++ LKRQY+AI++MLGP  SGFGWN + KC+  +  +FD WVKSHP+AKGL HK FPY
Sbjct: 74  SRLKILKRQYTAISDMLGPSASGFGWNEQLKCVVADKIVFDEWVKSHPTAKGLLHKPFPY 133

Query: 132 YGDLAIVFGKDRATGSHATTTAEVGSEPVMEKENEDILNNQSPDFENYIP------DPPF 191
           Y +LAIV+GKDRATG  A     +G    +++  E+I N  + DF+ + P      +   
Sbjct: 134 YDELAIVYGKDRATGDGA-----MGFSETLDEIAEEINNGWNDDFDPFDPLDEMNANASM 193

Query: 192 ASSPPSEDYSTTPSGRGSGSSLP------------SRSRRSRSSSIGEYSEVWPVMNEDL 251
            SS PS   +T  + R S +  P            S  + S S SI + ++ +   +E  
Sbjct: 194 NSSIPSSQ-TTRKAKRKSNNGDPLVELLSKSVQEFSTMQASASDSIKKLADCF--QHEAD 253

Query: 252 ARRRRRELYAELQSILGLSVQDRLTVARSLLADPMLLSHFVDFPPQWKYDYCMQVL 290
              RR +LY E++ + GL+   RL + + L+++   + +F     ++K D+ + +L
Sbjct: 254 GAARRMKLYEEIKKVDGLTNSQRLKIGKLLVSNQPHIDYFFTLEEEFKLDFLLGML 301

[Close]

BLAST of Clc06G09595 vs. NCBI nr
Match: KAA0033744.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0044866.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0046274.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0049705.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0057135.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 204.1 bits (518), Expect = 1.6e-48
Identity = 120/303 (39.60%), Postives = 166/303 (54.79%), Query Frame = 0


Query: 9   RAAKHVWTDEKDRILVECLVQYVQSGHWRADNRTFRPGFLSNILRMMQQKIPGCSIQVSP 68
           RA +HVWT E++  LVECL++ V  G W++DN TFRPG+L+ ++RMM +K+PGC ++ + 
Sbjct: 6   RAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATT 65

Query: 69  HLKSRIRTLKRQYSAIAEMLGPGCSGFGWNAEHKCIDCEAEIFDAWVKSHPSAKGLRHKL 128
            +  RI+TLKR + AIAEM GP CSGFGWN E KCI  E E+FD WV+SHP+AKGL +K 
Sbjct: 66  VIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKGLLNKP 125

Query: 129 FPYYGDLAIVFGKDRATGSHATTTAEVGSEPVMEKENEDILNNQSPDFENYIPDPPFASS 188
           FPYY +L  VFG+DRATG  A T A+VGS       +   + + + DF      PP  S 
Sbjct: 126 FPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDF------PPVYSQ 185

Query: 189 ----PPSEDYSTTPSGRGSGSSLPSRSRRSRSS------------------SIGEYSEVW 248
                  +  ++ PS    G +  S S+R R S                   + E +E W
Sbjct: 186 GVDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLREIAE-W 245

Query: 249 PVMNEDLARRRRRELYAELQSILGLSVQDRLTVARSLLADPMLLSHFVDFPPQWKYDYCM 290
           P  N       R E +  L+ +  L+  DR  + R LL+    L  FV  P   +  +C 
Sbjct: 246 PARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREGFCR 301

[Close]

BLAST of Clc06G09595 vs. NCBI nr
Match: TYJ96194.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ96764.1 retrotransposon protein [Cucumis melo var. makuwa] >TYJ97116.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK01046.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK12167.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 203.8 bits (517), Expect = 2.1e-48
Identity = 119/302 (39.40%), Postives = 167/302 (55.30%), Query Frame = 0


Query: 9   RAAKHVWTDEKDRILVECLVQYVQSGHWRADNRTFRPGFLSNILRMMQQKIPGCSIQVSP 68
           RA +HVWT E++  LVECL++ V  G W++DN TFRPG+L+ ++RMM +K+PGC ++ + 
Sbjct: 6   RAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATT 65

Query: 69  HLKSRIRTLKRQYSAIAEMLGPGCSGFGWNAEHKCIDCEAEIFDAWVKSHPSAKGLRHKL 128
            +  RI+TLKR + AIAEM GP CSGFGWN E KCI  E E+FD WV+SHP+AKGL +K 
Sbjct: 66  VIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKGLLNKP 125

Query: 129 FPYYGDLAIVFGKDRATGSHATTTAEVGSEPVMEKENEDILNNQSPDFENYIPDPPFASS 188
           FPYY +L  VFG+DRATG  A T A+VGS       +   + + + DF      PP  S 
Sbjct: 126 FPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDF------PPVYSQ 185

Query: 189 ----PPSEDYSTTPSGRGSGSSLPSRSRRSRSS-----------SIGEYSE------VWP 248
                  +  ++ PS    G +  S S+R R S           ++ + +E       WP
Sbjct: 186 GVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLREIAQWP 245

Query: 249 VMNEDLARRRRRELYAELQSILGLSVQDRLTVARSLLADPMLLSHFVDFPPQWKYDYCMQ 290
             N       R E +  L+ +  L+  DR  + R LL+    L  FV  P   +  +C  
Sbjct: 246 ARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRV 301

[Close]

BLAST of Clc06G09595 vs. NCBI nr
Match: KAA0031555.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0036352.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0043921.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0047622.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0049406.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 203.8 bits (517), Expect = 2.1e-48
Identity = 119/302 (39.40%), Postives = 167/302 (55.30%), Query Frame = 0


Query: 9   RAAKHVWTDEKDRILVECLVQYVQSGHWRADNRTFRPGFLSNILRMMQQKIPGCSIQVSP 68
           RA +HVWT E++  LVECL++ V  G W++DN TFRPG+L+ ++RMM +K+PGC ++ + 
Sbjct: 6   RAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATT 65

Query: 69  HLKSRIRTLKRQYSAIAEMLGPGCSGFGWNAEHKCIDCEAEIFDAWVKSHPSAKGLRHKL 128
            +  RI+TLKR + AIAEM GP CSGFGWN E KCI  E E+FD WV+SHP+AKGL +K 
Sbjct: 66  VIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKGLLNKP 125

Query: 129 FPYYGDLAIVFGKDRATGSHATTTAEVGSEPVMEKENEDILNNQSPDFENYIPDPPFASS 188
           FPYY +L  VFG+DRATG  A T A+VGS       +   + + + DF      PP  S 
Sbjct: 126 FPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDF------PPVYSQ 185

Query: 189 ----PPSEDYSTTPSGRGSGSSLPSRSRRSRSS-----------SIGEYSE------VWP 248
                  +  ++ PS    G +  S S+R R S           ++ + +E       WP
Sbjct: 186 GVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHVALDQTNEQLREIAQWP 245

Query: 249 VMNEDLARRRRRELYAELQSILGLSVQDRLTVARSLLADPMLLSHFVDFPPQWKYDYCMQ 290
             N       R E +  L+ +  L+  DR  + R LL+    L  FV  P   +  +C  
Sbjct: 246 ARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRV 301

[Close]

BLAST of Clc06G09595 vs. ExPASy TrEMBL
Match: A0A5A7U0H7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G002060 PE=4 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 1.1e-50
Identity = 118/302 (39.07%), Postives = 163/302 (53.97%), Query Frame = 0


Query: 6   SRARAAKHVWTDEKDRILVECLVQYVQSGHWRADNRTFRPGFLSNILRMMQQKIPGCSIQ 65
           S +RA KH WT E++   VECLV+ V SG WR+DN TF+PG+L+ + RMM +K+PG +IQ
Sbjct: 3   SLSRAPKHTWTKEEEEKFVECLVELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTNIQ 62

Query: 66  VSPHLKSRIRTLKRQYSAIAEMLGPGCSGFGWNAEHKCIDCEAEIFDAWVKSHPSAKGLR 125
            S  +   +++LK+ Y AIAEM GP CSGFGWN E +CI  E ++FD+W+KSHP+AKGL 
Sbjct: 63  ESSTIDCHVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIAERDLFDSWIKSHPAAKGLL 122

Query: 126 HKLFPYYGDLAIVFGKDRATGSHATTTAEVGSEPVMEKENEDILNNQSPDFENYIPDPPF 185
           HK FPYY DL+ VFGKDRATG+ + T   VGS         ++ N+  P  +++  D P 
Sbjct: 123 HKSFPYYDDLSYVFGKDRATGARSETFPNVGSNV------SNMFNDTIPLGDSHDEDIPT 182

Query: 186 ASS-----PPSEDYSTTPSGRGSGSSLPSRSRRSRSSSIGEYSEV--------------- 245
             S      P E +           +  S S+R R S   E  EV               
Sbjct: 183 MYSQGVHMSPDEMFGIRAGQASERRNCSSVSKRKRGSERYETVEVIRSVMEFGNEQLKAI 242

Query: 246 --WPVMNEDLARRRRRELYAELQSILGLSVQDRLTVARSLLADPMLLSHFVDFPPQWKYD 286
             WP     +    R ++  +LQ I  L  QDR  + + L      +  F+  P + K +
Sbjct: 243 ADWPKEKRAMEVEMRAQVVKQLQDIPKLRSQDRAKLMQILFRSLEAIEGFLSIPTELKLE 298

[Close]

BLAST of Clc06G09595 vs. ExPASy TrEMBL
Match: A0A1S3B4L3 (uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=4 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 1.1e-50
Identity = 118/302 (39.07%), Postives = 163/302 (53.97%), Query Frame = 0


Query: 6   SRARAAKHVWTDEKDRILVECLVQYVQSGHWRADNRTFRPGFLSNILRMMQQKIPGCSIQ 65
           S +RA KH WT E++   VECLV+ V SG WR+DN TF+PG+L+ + RMM +K+PG +IQ
Sbjct: 3   SLSRAPKHTWTKEEEEKFVECLVELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTNIQ 62

Query: 66  VSPHLKSRIRTLKRQYSAIAEMLGPGCSGFGWNAEHKCIDCEAEIFDAWVKSHPSAKGLR 125
            S  +   +++LK+ Y AIAEM GP CSGFGWN E +CI  E ++FD+W+KSHP+AKGL 
Sbjct: 63  ESSTIDCHVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIAERDLFDSWIKSHPAAKGLL 122

Query: 126 HKLFPYYGDLAIVFGKDRATGSHATTTAEVGSEPVMEKENEDILNNQSPDFENYIPDPPF 185
           HK FPYY DL+ VFGKDRATG+ + T   VGS         ++ N+  P  +++  D P 
Sbjct: 123 HKSFPYYDDLSYVFGKDRATGARSETFPNVGSNV------SNMFNDTIPLGDSHDEDIPT 182

Query: 186 ASS-----PPSEDYSTTPSGRGSGSSLPSRSRRSRSSSIGEYSEV--------------- 245
             S      P E +           +  S S+R R S   E  EV               
Sbjct: 183 MYSQGVHMSPDEMFGIRAGQASERRNCSSVSKRKRGSERYETVEVIRSVMEFGNEQLKAI 242

Query: 246 --WPVMNEDLARRRRRELYAELQSILGLSVQDRLTVARSLLADPMLLSHFVDFPPQWKYD 286
             WP     +    R ++  +LQ I  L  QDR  + + L      +  F+  P + K +
Sbjct: 243 ADWPKEKRAMEVEMRAQVVKQLQDIPKLRSQDRAKLMQILFRSLEAIEGFLSIPTELKLE 298

[Close]

BLAST of Clc06G09595 vs. ExPASy TrEMBL
Match: A0A803QNC5 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 6.0e-49
Identity = 115/296 (38.85%), Postives = 171/296 (57.77%), Query Frame = 0


Query: 12  KHVWTDEKDRILVECLVQYVQSGHWRADNRTFRPGFLSNILRMMQQKIPGCSIQVSPHLK 71
           KH WT  +D  LVECLV    SG W+ADN TF+PG+L  + +MM  +IP   I+  PH+ 
Sbjct: 269 KHQWTSIQDSKLVECLVDMCNSGKWKADNGTFKPGYLQQLEKMMNDRIPNSGIKAQPHID 328

Query: 72  SRIRTLKRQYSAIAEMLGPGCSGFGWNAEHKCIDCEAEIFDAWVKSHPSAKGLRHKLFPY 131
           SR++ LKRQY+AI++MLGP  SGFGWN + KC+  +  +FD WVKSHP+AKGL HK FPY
Sbjct: 329 SRLKILKRQYTAISDMLGPSASGFGWNEQLKCVVADKIVFDEWVKSHPTAKGLLHKPFPY 388

Query: 132 YGDLAIVFGKDRATGSHATTTAEVGSEPVMEKENEDILNNQSPDFENYIP------DPPF 191
           Y +LAIV+GKDRATG  A     +G    +++  E+I N  + DF+ + P      +   
Sbjct: 389 YDELAIVYGKDRATGDGA-----MGFSETLDEIAEEINNGWNDDFDPFDPLDEMNANASM 448

Query: 192 ASSPPSEDYSTTPSGRGSGSSLP------------SRSRRSRSSSIGEYSEVWPVMNEDL 251
            SS PS   +T  + R S +  P            S  + S S SI + ++ +   +E  
Sbjct: 449 NSSIPSSQ-TTRKAKRKSNNGDPLVELLSKSVQEFSTMQASASDSIKKLADCF--QHEAD 508

Query: 252 ARRRRRELYAELQSILGLSVQDRLTVARSLLADPMLLSHFVDFPPQWKYDYCMQVL 290
              RR +LY E++ + GL+   RL + + L+++   + +F     ++K D+ + +L
Sbjct: 509 GAARRMKLYEEIKKVDGLTNSQRLKIGKLLVSNQPHIDYFFTLEEEFKLDFLLGML 556

[Close]

BLAST of Clc06G09595 vs. ExPASy TrEMBL
Match: A0A5A7TRV1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold153G00290 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 7.9e-49
Identity = 120/303 (39.60%), Postives = 166/303 (54.79%), Query Frame = 0


Query: 9   RAAKHVWTDEKDRILVECLVQYVQSGHWRADNRTFRPGFLSNILRMMQQKIPGCSIQVSP 68
           RA +HVWT E++  LVECL++ V  G W++DN TFRPG+L+ ++RMM +K+PGC ++ + 
Sbjct: 6   RAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATT 65

Query: 69  HLKSRIRTLKRQYSAIAEMLGPGCSGFGWNAEHKCIDCEAEIFDAWVKSHPSAKGLRHKL 128
            +  RI+TLKR + AIAEM GP CSGFGWN E KCI  E E+FD WV+SHP+AKGL +K 
Sbjct: 66  VIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKGLLNKP 125

Query: 129 FPYYGDLAIVFGKDRATGSHATTTAEVGSEPVMEKENEDILNNQSPDFENYIPDPPFASS 188
           FPYY +L  VFG+DRATG  A T A+VGS       +   + + + DF      PP  S 
Sbjct: 126 FPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDF------PPVYSQ 185

Query: 189 ----PPSEDYSTTPSGRGSGSSLPSRSRRSRSS------------------SIGEYSEVW 248
                  +  ++ PS    G +  S S+R R S                   + E +E W
Sbjct: 186 GVDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLREIAE-W 245

Query: 249 PVMNEDLARRRRRELYAELQSILGLSVQDRLTVARSLLADPMLLSHFVDFPPQWKYDYCM 290
           P  N       R E +  L+ +  L+  DR  + R LL+    L  FV  P   +  +C 
Sbjct: 246 PARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREGFCR 301

[Close]

BLAST of Clc06G09595 vs. ExPASy TrEMBL
Match: A0A5D3CWL2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G00640 PE=4 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 1.0e-48
Identity = 119/302 (39.40%), Postives = 167/302 (55.30%), Query Frame = 0


Query: 9   RAAKHVWTDEKDRILVECLVQYVQSGHWRADNRTFRPGFLSNILRMMQQKIPGCSIQVSP 68
           RA +HVWT E++  LVECL++ V  G W++DN TFRPG+L+ ++RMM +K+PGC ++ + 
Sbjct: 6   RAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATT 65

Query: 69  HLKSRIRTLKRQYSAIAEMLGPGCSGFGWNAEHKCIDCEAEIFDAWVKSHPSAKGLRHKL 128
            +  RI+TLKR + AIAEM GP CSGFGWN E KCI  E E+FD WV+SHP+AKGL +K 
Sbjct: 66  VIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKGLLNKP 125

Query: 129 FPYYGDLAIVFGKDRATGSHATTTAEVGSEPVMEKENEDILNNQSPDFENYIPDPPFASS 188
           FPYY +L  VFG+DRATG  A T A+VGS       +   + + + DF      PP  S 
Sbjct: 126 FPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDF------PPVYSQ 185

Query: 189 ----PPSEDYSTTPSGRGSGSSLPSRSRRSRSS-----------SIGEYSE------VWP 248
                  +  ++ PS    G +  S S+R R S           ++ + +E       WP
Sbjct: 186 GVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHVALDQTNEQLREIAQWP 245

Query: 249 VMNEDLARRRRRELYAELQSILGLSVQDRLTVARSLLADPMLLSHFVDFPPQWKYDYCMQ 290
             N       R E +  L+ +  L+  DR  + R LL+    L  FV  P   +  +C  
Sbjct: 246 ARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRV 301

[Close]

BLAST of Clc06G09595 vs. TAIR 10
Match: AT4G02210.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2); Has 791 Blast hits to 465 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 17; Plants - 748; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). )

HSP 1 Score: 60.1 bits (144), Expect = 3.5e-09
Identity = 32/138 (23.19%), Postives = 65/138 (47.10%), Query Frame = 0


Query: 3   ASGSRARAAKHVWTDEKDRILVECLVQYVQSGHWRADNRTFRPGFLSNILRMMQQKIPGC 62
           + GS     +  W    DR  ++ ++   + G+       FR    + ++ +   K    
Sbjct: 174 SKGSSVTRCRTTWHPPMDRYFIDLMLDQARRGN--QIEGVFRKQAWTEMVNLFNAKFES- 233

Query: 63  SIQVSPHLKSRIRTLKRQYSAIAEMLGPGCSGFGWNAEHKCIDCEAEIFDAWVKSHPSAK 122
           +  V   LK+R ++L+RQ++AI  +L     GF W+ E + +  +  ++  ++K+H  A+
Sbjct: 234 NFDVDV-LKNRYKSLRRQFNAIKSIL--RSDGFAWDNERQMVTADNNVWQDYIKAHRDAR 293

Query: 123 GLRHKLFPYYGDLAIVFG 141
               +  PYY DL ++ G
Sbjct: 294 QFMTRPIPYYKDLCVLCG 305

[Close]

BLAST of Clc06G09595 vs. TAIR 10
Match: AT4G02210.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2). )

HSP 1 Score: 60.1 bits (144), Expect = 3.5e-09
Identity = 32/138 (23.19%), Postives = 65/138 (47.10%), Query Frame = 0


Query: 3   ASGSRARAAKHVWTDEKDRILVECLVQYVQSGHWRADNRTFRPGFLSNILRMMQQKIPGC 62
           + GS     +  W    DR  ++ ++   + G+       FR    + ++ +   K    
Sbjct: 174 SKGSSVTRCRTTWHPPMDRYFIDLMLDQARRGN--QIEGVFRKQAWTEMVNLFNAKFES- 233

Query: 63  SIQVSPHLKSRIRTLKRQYSAIAEMLGPGCSGFGWNAEHKCIDCEAEIFDAWVKSHPSAK 122
           +  V   LK+R ++L+RQ++AI  +L     GF W+ E + +  +  ++  ++K+H  A+
Sbjct: 234 NFDVDV-LKNRYKSLRRQFNAIKSIL--RSDGFAWDNERQMVTADNNVWQDYIKAHRDAR 293

Query: 123 GLRHKLFPYYGDLAIVFG 141
               +  PYY DL ++ G
Sbjct: 294 QFMTRPIPYYKDLCVLCG 305

[Close]

BLAST of Clc06G09595 vs. TAIR 10
Match: AT2G24960.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 1453 Blast hits to 509 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 39; Plants - 1363; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink). )

HSP 1 Score: 59.3 bits (142), Expect = 6.0e-09
Identity = 37/159 (23.27%), Postives = 76/159 (47.80%), Query Frame = 0


Query: 15  WTDEKDRILVECLVQYVQSGHWRADNRTFRPGFLSNILRMMQQKIPGCSIQVSPHLKSRI 74
           WT   +R  ++ +++++  G+      TF     + +L +   K    S      LKSR 
Sbjct: 15  WTPTMERFFIDLMLEHLHRGN--RTGHTFNKQAWNEMLTVFNSKFG--SQYDKDVLKSRY 74

Query: 75  RTLKRQYSAIAEMLGPGCSGFGWNAEHKCIDCEAEIFDAWVKSHPSAKGLRHKLFPYYGD 134
             L +QY+ +  +L  G  GF W+  H+ +  +  ++  ++K+HP A+  + K    + D
Sbjct: 75  TNLWKQYNDVKCLLDHG--GFVWDQTHQTVIGDDSLWSLYLKAHPEARVYKTKPVLNFSD 134

Query: 135 LAIVFGKDRATGSHATTTAEVGSEPVMEKENEDILNNQS 174
           L +++G   A G ++ ++ ++        E ED +N +S
Sbjct: 135 LCLIYGYTVADGRYSMSSHDL--------EIEDEINGES 159

[Close]

BLAST of Clc06G09595 vs. TAIR 10
Match: AT2G24960.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 59.3 bits (142), Expect = 6.0e-09
Identity = 37/159 (23.27%), Postives = 76/159 (47.80%), Query Frame = 0


Query: 15  WTDEKDRILVECLVQYVQSGHWRADNRTFRPGFLSNILRMMQQKIPGCSIQVSPHLKSRI 74
           WT   +R  ++ +++++  G+      TF     + +L +   K    S      LKSR 
Sbjct: 15  WTPTMERFFIDLMLEHLHRGN--RTGHTFNKQAWNEMLTVFNSKFG--SQYDKDVLKSRY 74

Query: 75  RTLKRQYSAIAEMLGPGCSGFGWNAEHKCIDCEAEIFDAWVKSHPSAKGLRHKLFPYYGD 134
             L +QY+ +  +L  G  GF W+  H+ +  +  ++  ++K+HP A+  + K    + D
Sbjct: 75  TNLWKQYNDVKCLLDHG--GFVWDQTHQTVIGDDSLWSLYLKAHPEARVYKTKPVLNFSD 134

Query: 135 LAIVFGKDRATGSHATTTAEVGSEPVMEKENEDILNNQS 174
           L +++G   A G ++ ++ ++        E ED +N +S
Sbjct: 135 LCLIYGYTVADGRYSMSSHDL--------EIEDEINGES 159

[Close]

BLAST of Clc06G09595 vs. TAIR 10
Match: AT1G30140.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G27260.1); Has 313 Blast hits to 256 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 8; Plants - 295; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 58.2 bits (139), Expect = 1.3e-08
Identity = 56/206 (27.18%), Postives = 94/206 (45.63%), Query Frame = 0


Query: 15  WTDEKDRILVECLVQYVQSGHWRADNRTFRPGFLSNILRMMQQKIPGCSIQVSPHLKSRI 74
           WT ++  +L+E + Q     +WR  +       + + L     K  GC+     ++ SR+
Sbjct: 17  WTPDETDVLIELIRQ-----NWRDSSGIIGKLTVESKLLPALNKRLGCNKNHKNYM-SRL 76

Query: 75  RTLKRQYSAIAEMLGPGCSGFGWNAEHKCIDCEAEIFDAWVKSHPSAKGLRHKLFPYYGD 134
           + LK  Y +  + L    SGFGW+ E K      E++  ++K+HP+ K ++ +   ++ D
Sbjct: 77  KFLKNLYQSYLD-LKRFSSGFGWDPETKKFTAPDEVWRDYLKAHPNHKHMQTESIDHFED 136

Query: 135 LAIVFGKDRATGSHATTTAEVGSE---PVMEKENEDILNNQSPDFENYIPDPPFASSPPS 194
           L I+FG   ATGS A   ++        V E+       NQ  + E  + +  F   P S
Sbjct: 137 LQIIFGDVVATGSFAVGMSDSTCPRIYTVGERSQGKETVNQDENIEE-VYEFSF-QHPSS 196

Query: 195 EDYSTT-----PSGRGSGSSLPSRSR 213
            +YST+     P+ RG    L  R R
Sbjct: 197 AEYSTSPFTFDPTTRGRSEKLLPRKR 213

The following BLAST results are available for this feature:

BLAST of Clc06G09595 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008441954.1	2.3e-50	39.07	PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 ret...	[more]
XP_030483301.1	1.2e-48	38.85	uncharacterized protein LOC115699898 [Cannabis sativa]	[more]
KAA0033744.1	1.6e-48	39.60	retrotransposon protein [Cucumis melo var. makuwa] >KAA0044866.1 retrotransposon...	[more]
TYJ96194.1	2.1e-48	39.40	retrotransposon protein [Cucumis melo var. makuwa] >TYJ96764.1 retrotransposon p...	[more]
KAA0031555.1	2.1e-48	39.40	retrotransposon protein [Cucumis melo var. makuwa] >KAA0036352.1 retrotransposon...	[more]

BLAST of Clc06G09595 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc06G09595 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U0H7	1.1e-50	39.07	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B4L3	1.1e-50	39.07	uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=...	[more]
A0A803QNC5	6.0e-49	38.85	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A5A7TRV1	7.9e-49	39.60	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3CWL2	1.0e-48	39.40	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Clc06G09595 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G02210.1	3.5e-09	23.19	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G02210.2	3.5e-09	23.19	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G24960.1	6.0e-09	23.27	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT2G24960.2	6.0e-09	23.27	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G30140.1	1.3e-08	27.18	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024752	Myb/SANT-like domain	PFAM	PF12776	Myb_DNA-bind_3	coord: 15..112 e-value: 2.4E-12 score: 47.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 171..215
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 189..215
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 8..290

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc06G09595.1	Clc06G09595.1	mRNA