Clc06G09300 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CAAAGAGAGATGATTATTACCAACTCCAAACCAAACCTCCTCATATTTATTAAAACATATTGTCTTCTTCCTTTTATTTCTCCCCTTTCTCTCCCCAAATAAAACAAAATCACAACTCAATGTTGCTAAGAGCCACCATTTCAACAACCAAAAAATTCTTCAGAAAAACCTTATGCAACTTCAAATCCTTCTTCTCCAATAGCTACCATAGGCTTCCCAAGGCGGCCTTCCCCGCCGTCTCGGAAATGGATAAAGACTCAACCTTTCATTTCATTTCATCCCAAAAGGAGGTGCAAAATGGAAGCTTTATGAAGAATAACAATCCCAATGATGCACTTCATTTTTCGAAGACTACTACTACTACGATCGACGAAGCCCAGATGGAAAGAGTTGATAAAAATGAAGGTAGCATCAAAATTGGAGCTATCCATCAAAGGAAAACCCAAGAAAATTTGGAATATTGTAGTTGGGAGAGAAGAATGTGTTTGGTTGCGAAGAAAATGAAAGAGTTGGAAAAGGTAGATGCTAGAAATGTGGATCATGCAATGGATATTGAAGAAGTTCTTCATTACTACTCTCGTCTCACTTCTCCAACATTTCTTGAGATTGTGGATAAATTCTTCATGGACATTTTTGCTGAATTTTCTGCTAATTCCTCTTCTCAACAAACTCTATTTCCTCGGAATCAGTGGGGGAATTGAATTCAACTTCATACATATCGATGTCGATACTAGAAGTTTCGAGCTTGCTTGATTTCTTTTGCAACCTATGAGTTGTAATGCAAATTTGATTGTGTGTGTTATTATGATTCATACATTTTAGTTTCATTTGAATGCCTATGAATGAATAATACATTATTAAATCATTTTTAATGTGATTTTTGTTTTAAATGATTGTGTCGCCGCTCGAGTCTTGCACGTGTTCTTCATCGTTATTGTGGCCTTTTCGTGGACTTGATTTCCGACTTGCTTCTCTTGGTCTAATCTCACTTCTCGGGCTCACTTGTGGCCGGGTTGTCCACCTAAACCCGAGGCTGTTATAGAAGAGATTCTCGCATCGTTGTGATGTTTAG CAAAGAGAGATGATTATTACCAACTCCAAACCAAACCTCCTCATATTTATTAAAACATATTGTCTTCTTCCTTTTATTTCTCCCCTTTCTCTCCCCAAATAAAACAAAATCACAACTCAATGTTGCTAAGAGCCACCATTTCAACAACCAAAAAATTCTTCAGAAAAACCTTATGCAACTTCAAATCCTTCTTCTCCAATAGCTACCATAGGCTTCCCAAGGCGGCCTTCCCCGCCGTCTCGGAAATGGATAAAGACTCAACCTTTCATTTCATTTCATCCCAAAAGGAGGTGCAAAATGGAAGCTTTATGAAGAATAACAATCCCAATGATGCACTTCATTTTTCGAAGACTACTACTACTACGATCGACGAAGCCCAGATGGAAAGAGTTGATAAAAATGAAGGTAGCATCAAAATTGGAGCTATCCATCAAAGGAAAACCCAAGAAAATTTGGAATATTGTAGTTGGGAGAGAAGAATGTGTTTGGTTGCGAAGAAAATGAAAGAGTTGGAAAAGGTAGATGCTAGAAATGTGGATCATGCAATGGATATTGAAGAAGTTCTTCATTACTACTCTCGTCTCACTTCTCCAACATTTCTTGAGATTGTGGATAAATTCTTCATGGACATTTTTGCTGAATTTTCTGCTAATTCCTCTTCTCAACAAACTCTATTTCCTCGGAATCAGTGGGGGAATTGAATTCAACTTCATACATATCGATGTCGATACTAGAAGTTTCGAGCTTGCTTGATTTCTTTTGCAACCTATGAGTTGTAATGCAAATTTGATTGTGTGTGTTATTATGATTCATACATTTTAGTTTCATTTGAATGCCTATGAATGAATAATACATTATTAAATCATTTTTAATGTGATTTTTGTTTTAAATGATTGTGTCGCCGCTCGAGTCTTGCACGTGTTCTTCATCGTTATTGTGGCCTTTTCGTGGACTTGATTTCCGACTTGCTTCTCTTGGTCTAATCTCACTTCTCGGGCTCACTTGTGGCCGGGTTGTCCACCTAAACCCGAGGCTGTTATAGAAGAGATTCTCGCATCGTTGTGATGTTTAG ATGTTGCTAAGAGCCACCATTTCAACAACCAAAAAATTCTTCAGAAAAACCTTATGCAACTTCAAATCCTTCTTCTCCAATAGCTACCATAGGCTTCCCAAGGCGGCCTTCCCCGCCGTCTCGGAAATGGATAAAGACTCAACCTTTCATTTCATTTCATCCCAAAAGGAGGTGCAAAATGGAAGCTTTATGAAGAATAACAATCCCAATGATGCACTTCATTTTTCGAAGACTACTACTACTACGATCGACGAAGCCCAGATGGAAAGAGTTGATAAAAATGAAGGTAGCATCAAAATTGGAGCTATCCATCAAAGGAAAACCCAAGAAAATTTGGAATATTGTAGTTGGGAGAGAAGAATGTGTTTGGTTGCGAAGAAAATGAAAGAGTTGGAAAAGGTAGATGCTAGAAATGTGGATCATGCAATGGATATTGAAGAAGTTCTTCATTACTACTCTCGTCTCACTTCTCCAACATTTCTTGAGATTGTGGATAAATTCTTCATGGACATTTTTGCTGAATTTTCTGCTAATTCCTCTTCTCAACAAACTCTATTTCCTCGGAATCAGTGGGGGAATTGA MLLRATISTTKKFFRKTLCNFKSFFSNSYHRLPKAAFPAVSEMDKDSTFHFISSQKEVQNGSFMKNNNPNDALHFSKTTTTTIDEAQMERVDKNEGSIKIGAIHQRKTQENLEYCSWERRMCLVAKKMKELEKVDARNVDHAMDIEEVLHYYSRLTSPTFLEIVDKFFMDIFAEFSANSSSQQTLFPRNQWGN Homology
BLAST of Clc06G09300 vs. NCBI nr
Match: XP_038880084.1 (uncharacterized protein LOC120071772 [Benincasa hispida]) HSP 1 Score: 292.4 bits (747), Expect = 3.0e-75 Identity = 154/191 (80.63%), Postives = 169/191 (88.48%), Query Frame = 0
BLAST of Clc06G09300 vs. NCBI nr
Match: XP_008463389.1 (PREDICTED: uncharacterized protein LOC103501556 [Cucumis melo]) HSP 1 Score: 281.2 bits (718), Expect = 6.8e-72 Identity = 148/193 (76.68%), Postives = 163/193 (84.46%), Query Frame = 0
BLAST of Clc06G09300 vs. NCBI nr
Match: XP_011655505.1 (uncharacterized protein LOC105435550 [Cucumis sativus]) HSP 1 Score: 278.5 bits (711), Expect = 4.4e-71 Identity = 144/186 (77.42%), Postives = 160/186 (86.02%), Query Frame = 0
BLAST of Clc06G09300 vs. NCBI nr
Match: XP_022145016.1 (uncharacterized protein LOC111014544 [Momordica charantia]) HSP 1 Score: 230.3 bits (586), Expect = 1.4e-56 Identity = 134/201 (66.67%), Postives = 154/201 (76.62%), Query Frame = 0
BLAST of Clc06G09300 vs. NCBI nr
Match: KAE8652951.1 (hypothetical protein Csa_017733 [Cucumis sativus]) HSP 1 Score: 227.6 bits (579), Expect = 8.9e-56 Identity = 117/162 (72.22%), Postives = 133/162 (82.10%), Query Frame = 0
BLAST of Clc06G09300 vs. ExPASy TrEMBL
Match: A0A1S3CJL1 (uncharacterized protein LOC103501556 OS=Cucumis melo OX=3656 GN=LOC103501556 PE=4 SV=1) HSP 1 Score: 281.2 bits (718), Expect = 3.3e-72 Identity = 148/193 (76.68%), Postives = 163/193 (84.46%), Query Frame = 0
BLAST of Clc06G09300 vs. ExPASy TrEMBL
Match: A0A0A0LTA6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G246600 PE=4 SV=1) HSP 1 Score: 278.5 bits (711), Expect = 2.1e-71 Identity = 144/186 (77.42%), Postives = 160/186 (86.02%), Query Frame = 0
BLAST of Clc06G09300 vs. ExPASy TrEMBL
Match: A0A6J1CV44 (uncharacterized protein LOC111014544 OS=Momordica charantia OX=3673 GN=LOC111014544 PE=4 SV=1) HSP 1 Score: 230.3 bits (586), Expect = 6.7e-57 Identity = 134/201 (66.67%), Postives = 154/201 (76.62%), Query Frame = 0
BLAST of Clc06G09300 vs. ExPASy TrEMBL
Match: A0A6J1H9I9 (uncharacterized protein LOC111461329 OS=Cucurbita moschata OX=3662 GN=LOC111461329 PE=4 SV=1) HSP 1 Score: 225.7 bits (574), Expect = 1.6e-55 Identity = 128/186 (68.82%), Postives = 145/186 (77.96%), Query Frame = 0
BLAST of Clc06G09300 vs. ExPASy TrEMBL
Match: A0A6J1IF62 (uncharacterized protein LOC111472233 OS=Cucurbita maxima OX=3661 GN=LOC111472233 PE=4 SV=1) HSP 1 Score: 224.6 bits (571), Expect = 3.7e-55 Identity = 128/194 (65.98%), Postives = 148/194 (76.29%), Query Frame = 0
BLAST of Clc06G09300 vs. TAIR 10
Match: AT3G24535.1 (unknown protein; Has 28 Blast hits to 27 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 66.2 bits (160), Expect = 3.2e-11 Identity = 51/181 (28.18%), Postives = 93/181 (51.38%), Query Frame = 0
BLAST of Clc06G09300 vs. TAIR 10
Match: AT1G15260.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G16070.1); Has 28 Blast hits to 28 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 65.9 bits (159), Expect = 4.2e-11 Identity = 36/91 (39.56%), Postives = 58/91 (63.74%), Query Frame = 0
BLAST of Clc06G09300 vs. TAIR 10
Match: AT3G16070.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15260.1); Has 26 Blast hits to 26 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 60.1 bits (144), Expect = 2.3e-09 Identity = 52/171 (30.41%), Postives = 87/171 (50.88%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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