Clc06G09140 (gene) Watermelon (cordophanus) v2

Overview
NameClc06G09140
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Descriptionanthranilate synthase beta subunit 1, chloroplastic-like
LocationClcChr06: 11641488 .. 11641949 (+)
RNA-Seq ExpressionClc06G09140
SyntenyClc06G09140
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGTCTGCCAATGCAGTTCTGTTTGAAACCATCATTTTCTTGTGCGATATGGTTGCTATTACACAATCTTCTACATCTTTATGTTTGCCCAAAAGTTTGTGGTTCTCTAGAACATCAAAGGTCACCTGTAGAACTGGCCTATTTGTGCCCTCAGGTATTATTTTTTTTCATTTTTCTCCCGTGTTGTTGTCTTTGACTGTAATGGATATGTTTTTATTGCTTTACTTCTTTTTTGCAGATATTTGCTTGGCTGCCAAGAATCCAAAAAGATTTGTCTTGAATGCGTCAATTTTAGTTATTGAGTCAAATTCGAGGACTTCAAGTTCAAACAAGAAGACCCAGAATCCAATAATTGCCATTGACAACTATGATAGCTTCACCTACAATCTTTGTCAGGTTATTACTCGATTTTTTTTTAGAGTACAAAATGTGGCTAATACTTATTCTTATTTTTGCTGA

mRNA sequence

ATGTTGTCTGCCAATGCAGTTCTGTTTGAAACCATCATTTTCTTGTGCGATATGGTTGCTATTACACAATCTTCTACATCTTTATGTTTGCCCAAAAGTTTGTGGTTCTCTAGAACATCAAAGGTCACCTGTAGAACTGGCCTATTTGTGCCCTCAGATATTTGCTTGGCTGCCAAGAATCCAAAAAGATTTGTCTTGAATGCGTCAATTTTAGTTATTGAGTCAAATTCGAGGACTTCAAGTTCAAACAAGAAGACCCAGAATCCAATAATTGCCATTGACAACTATGATAGCTTCACCTACAATCTTTGTCAGGTTATTACTCGATTTTTTTTTAGAGTACAAAATGTGGCTAATACTTATTCTTATTTTTGCTGA

Coding sequence (CDS)

ATGTTGTCTGCCAATGCAGTTCTGTTTGAAACCATCATTTTCTTGTGCGATATGGTTGCTATTACACAATCTTCTACATCTTTATGTTTGCCCAAAAGTTTGTGGTTCTCTAGAACATCAAAGGTCACCTGTAGAACTGGCCTATTTGTGCCCTCAGATATTTGCTTGGCTGCCAAGAATCCAAAAAGATTTGTCTTGAATGCGTCAATTTTAGTTATTGAGTCAAATTCGAGGACTTCAAGTTCAAACAAGAAGACCCAGAATCCAATAATTGCCATTGACAACTATGATAGCTTCACCTACAATCTTTGTCAGGTTATTACTCGATTTTTTTTTAGAGTACAAAATGTGGCTAATACTTATTCTTATTTTTGCTGA

Protein sequence

MLSANAVLFETIIFLCDMVAITQSSTSLCLPKSLWFSRTSKVTCRTGLFVPSDICLAAKNPKRFVLNASILVIESNSRTSSSNKKTQNPIIAIDNYDSFTYNLCQVITRFFFRVQNVANTYSYFC
Homology
[Close]
BLAST of Clc06G09140 vs. NCBI nr
Match: XP_004142292.1 (anthranilate synthase beta subunit 2, chloroplastic [Cucumis sativus] >XP_011654495.1 anthranilate synthase beta subunit 2, chloroplastic [Cucumis sativus] >KGN49672.1 hypothetical protein Csa_018456 [Cucumis sativus])

HSP 1 Score: 137.5 bits (345), Expect = 7.9e-29
Identity = 71/90 (78.89%), Postives = 76/90 (84.44%), Query Frame = 0 

Query: 18  MVAITQSSTSLCLPKSLWFSRTSKVTCRTGLFVPSDICLAAKNPKRFVLNASILVIESNS 77
           MVAI  SS S CLPKSL FS+TSK  CRTG+ VPSDI LAA+NPKRFVLNAS+ V ESNS
Sbjct: 1   MVAIVPSSASFCLPKSLVFSKTSKGNCRTGIAVPSDIRLAARNPKRFVLNASVSVNESNS 60

Query: 78  RTSSSNKKTQNPIIAIDNYDSFTYNLCQVI 108
           RTSS NKKTQNPII IDNYDSFTYNLCQ +
Sbjct: 61  RTSSLNKKTQNPIIVIDNYDSFTYNLCQYV 90

[Close]
BLAST of Clc06G09140 vs. NCBI nr
Match: XP_038893244.1 (anthranilate synthase beta subunit 2, chloroplastic-like [Benincasa hispida] >XP_038893245.1 anthranilate synthase beta subunit 2, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 130.2 bits (326), Expect = 1.3e-26
Identity = 71/89 (79.78%), Postives = 73/89 (82.02%), Query Frame = 0 

Query: 19  VAITQSSTSLCLPKSLWFSRTSKVTCRTGLFVPSDICLAAKNPKRFVLNASILVIESNSR 78
           V IT SS S CLPK L FS+TSKVTCRTGL  PSDI LAAKNPKRFVLNASI V ES SR
Sbjct: 4   VTITPSSASFCLPKRLLFSKTSKVTCRTGLSAPSDIRLAAKNPKRFVLNASISVNESTSR 63

Query: 79  TSSSNKKTQNPIIAIDNYDSFTYNLCQVI 108
           TSS N KTQNPII IDNYDSFTYNLCQ +
Sbjct: 64  TSSLN-KTQNPIIFIDNYDSFTYNLCQYV 91

[Close]
BLAST of Clc06G09140 vs. NCBI nr
Match: XP_022943100.1 (anthranilate synthase beta subunit 2, chloroplastic-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 119.0 bits (297), Expect = 2.9e-23
Identity = 70/107 (65.42%), Postives = 74/107 (69.16%), Query Frame = 0 

Query: 10  ETIIFLCDMVAITQSSTSLCLPKSLWFSRTSKVTCRTGLFVPSDICLAAKNPKRFVLNAS 69
           E IIFL +MVAIT SS S CLPK   FS+TSK T  TG    S     AKNPK FV+NAS
Sbjct: 18  EAIIFLRNMVAITPSSASFCLPKRSLFSKTSKTTRITGPSARSHSLFVAKNPKAFVVNAS 77

Query: 70  ILVIESNSRTSSSNKKTQNPIIAIDNYDSFTYNLCQVITRF--FFRV 115
           I V ESNSRTSS NKKT NPII IDNYDSFTYNLCQ +     FF V
Sbjct: 78  ISVTESNSRTSSLNKKTLNPIIVIDNYDSFTYNLCQYMGELGCFFEV 124

[Close]
BLAST of Clc06G09140 vs. NCBI nr
Match: XP_022989805.1 (anthranilate synthase beta subunit 2, chloroplastic-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 118.6 bits (296), Expect = 3.8e-23
Identity = 70/107 (65.42%), Postives = 74/107 (69.16%), Query Frame = 0 

Query: 10  ETIIFLCDMVAITQSSTSLCLPKSLWFSRTSKVTCRTGLFVPSDICLAAKNPKRFVLNAS 69
           E IIFL +MVAIT SS S CLPK   FS+TSK T  TG    S     AKNPK FV+NAS
Sbjct: 6   EAIIFLRNMVAITPSSASFCLPKRSLFSKTSKTTRITGPSALSHSLFVAKNPKAFVVNAS 65

Query: 70  ILVIESNSRTSSSNKKTQNPIIAIDNYDSFTYNLCQVITRF--FFRV 115
           I V ESNSRTSS NKKT NPII IDNYDSFTYNLCQ +     FF V
Sbjct: 66  ISVTESNSRTSSLNKKTLNPIIVIDNYDSFTYNLCQYMGELGCFFEV 112

[Close]
BLAST of Clc06G09140 vs. NCBI nr
Match: XP_022989797.1 (anthranilate synthase beta subunit 2, chloroplastic-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 118.6 bits (296), Expect = 3.8e-23
Identity = 70/107 (65.42%), Postives = 74/107 (69.16%), Query Frame = 0 

Query: 10  ETIIFLCDMVAITQSSTSLCLPKSLWFSRTSKVTCRTGLFVPSDICLAAKNPKRFVLNAS 69
           E IIFL +MVAIT SS S CLPK   FS+TSK T  TG    S     AKNPK FV+NAS
Sbjct: 16  EAIIFLRNMVAITPSSASFCLPKRSLFSKTSKTTRITGPSALSHSLFVAKNPKAFVVNAS 75

Query: 70  ILVIESNSRTSSSNKKTQNPIIAIDNYDSFTYNLCQVITRF--FFRV 115
           I V ESNSRTSS NKKT NPII IDNYDSFTYNLCQ +     FF V
Sbjct: 76  ISVTESNSRTSSLNKKTLNPIIVIDNYDSFTYNLCQYMGELGCFFEV 122

[Close]
BLAST of Clc06G09140 vs. ExPASy Swiss-Prot
Match: Q9FJM5 (Anthranilate synthase beta subunit 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ASB2 PE=2 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 7.5e-06
Identity = 35/88 (39.77%), Postives = 48/88 (54.55%), Query Frame = 0 

Query: 18  MVAITQSSTSLCLPKSLWFSRTSKVTCRTGLFVPSDICLAAKNPKRFVLNASILVIESNS 77
           M A T  ++ L  PK  + +R    +    L  P+ + +  K+ +  +  ASI + ESNS
Sbjct: 1   MAATTLYNSCLLQPKYGFTTRRLNQSLVNSLTNPTRVSVLWKSRRDVIAKASIEMAESNS 60

Query: 78  RTSSSNKKTQNPIIAIDNYDSFTYNLCQ 106
             SS    +  PII IDNYDSFTYNLCQ
Sbjct: 61  -ISSVVVNSSGPIIVIDNYDSFTYNLCQ 87

[Close]
BLAST of Clc06G09140 vs. ExPASy Swiss-Prot
Match: Q42565 (Anthranilate synthase beta subunit 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ASB1 PE=1 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 1.3e-05
Identity = 36/90 (40.00%), Postives = 47/90 (52.22%), Query Frame = 0 

Query: 18  MVAITQSSTSLCLPKSLWFSRTSKVTCRTGLFVPSDICLAAKNPKRFVLNASILVIESNS 77
           M A T   + L  PKS   +R    +    L  P+ + +  K+ +     ASI + ESNS
Sbjct: 1   MAASTLYKSCLLQPKSGSTTRRLNPSLVNPLTNPTRVSVLGKSRRDVFAKASIEMAESNS 60

Query: 78  RTS--SSNKKTQNPIIAIDNYDSFTYNLCQ 106
             S   ++ K   PII IDNYDSFTYNLCQ
Sbjct: 61  IPSVVVNSSKQHGPIIVIDNYDSFTYNLCQ 90

[Close]
BLAST of Clc06G09140 vs. ExPASy TrEMBL
Match: A0A0A0KMN8 (Glutamine amidotransferase type-1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G056100 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 3.8e-29
Identity = 71/90 (78.89%), Postives = 76/90 (84.44%), Query Frame = 0 

Query: 18  MVAITQSSTSLCLPKSLWFSRTSKVTCRTGLFVPSDICLAAKNPKRFVLNASILVIESNS 77
           MVAI  SS S CLPKSL FS+TSK  CRTG+ VPSDI LAA+NPKRFVLNAS+ V ESNS
Sbjct: 1   MVAIVPSSASFCLPKSLVFSKTSKGNCRTGIAVPSDIRLAARNPKRFVLNASVSVNESNS 60

Query: 78  RTSSSNKKTQNPIIAIDNYDSFTYNLCQVI 108
           RTSS NKKTQNPII IDNYDSFTYNLCQ +
Sbjct: 61  RTSSLNKKTQNPIIVIDNYDSFTYNLCQYV 90

[Close]
BLAST of Clc06G09140 vs. ExPASy TrEMBL
Match: A0A6J1FXD6 (anthranilate synthase beta subunit 2, chloroplastic-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111447935 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.4e-23
Identity = 70/107 (65.42%), Postives = 74/107 (69.16%), Query Frame = 0 

Query: 10  ETIIFLCDMVAITQSSTSLCLPKSLWFSRTSKVTCRTGLFVPSDICLAAKNPKRFVLNAS 69
           E IIFL +MVAIT SS S CLPK   FS+TSK T  TG    S     AKNPK FV+NAS
Sbjct: 18  EAIIFLRNMVAITPSSASFCLPKRSLFSKTSKTTRITGPSARSHSLFVAKNPKAFVVNAS 77

Query: 70  ILVIESNSRTSSSNKKTQNPIIAIDNYDSFTYNLCQVITRF--FFRV 115
           I V ESNSRTSS NKKT NPII IDNYDSFTYNLCQ +     FF V
Sbjct: 78  ISVTESNSRTSSLNKKTLNPIIVIDNYDSFTYNLCQYMGELGCFFEV 124

[Close]
BLAST of Clc06G09140 vs. ExPASy TrEMBL
Match: A0A6J1JND9 (anthranilate synthase beta subunit 2, chloroplastic-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111486873 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 1.8e-23
Identity = 70/107 (65.42%), Postives = 74/107 (69.16%), Query Frame = 0 

Query: 10  ETIIFLCDMVAITQSSTSLCLPKSLWFSRTSKVTCRTGLFVPSDICLAAKNPKRFVLNAS 69
           E IIFL +MVAIT SS S CLPK   FS+TSK T  TG    S     AKNPK FV+NAS
Sbjct: 6   EAIIFLRNMVAITPSSASFCLPKRSLFSKTSKTTRITGPSALSHSLFVAKNPKAFVVNAS 65

Query: 70  ILVIESNSRTSSSNKKTQNPIIAIDNYDSFTYNLCQVITRF--FFRV 115
           I V ESNSRTSS NKKT NPII IDNYDSFTYNLCQ +     FF V
Sbjct: 66  ISVTESNSRTSSLNKKTLNPIIVIDNYDSFTYNLCQYMGELGCFFEV 112

[Close]
BLAST of Clc06G09140 vs. ExPASy TrEMBL
Match: A0A6J1JGT4 (anthranilate synthase beta subunit 2, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111486873 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 1.8e-23
Identity = 70/107 (65.42%), Postives = 74/107 (69.16%), Query Frame = 0 

Query: 10  ETIIFLCDMVAITQSSTSLCLPKSLWFSRTSKVTCRTGLFVPSDICLAAKNPKRFVLNAS 69
           E IIFL +MVAIT SS S CLPK   FS+TSK T  TG    S     AKNPK FV+NAS
Sbjct: 16  EAIIFLRNMVAITPSSASFCLPKRSLFSKTSKTTRITGPSALSHSLFVAKNPKAFVVNAS 75

Query: 70  ILVIESNSRTSSSNKKTQNPIIAIDNYDSFTYNLCQVITRF--FFRV 115
           I V ESNSRTSS NKKT NPII IDNYDSFTYNLCQ +     FF V
Sbjct: 76  ISVTESNSRTSSLNKKTLNPIIVIDNYDSFTYNLCQYMGELGCFFEV 122

[Close]
BLAST of Clc06G09140 vs. ExPASy TrEMBL
Match: A0A1S3BZE1 (anthranilate synthase beta subunit 1, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103495068 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 4.5e-22
Identity = 56/72 (77.78%), Postives = 63/72 (87.50%), Query Frame = 0 

Query: 36  FSRTSKVTCRTGLFVPSDICLAAKNPKRFVLNASILVIESNSRTSSSNKKTQNPIIAIDN 95
           FS+T K TCRTG++VPSDI LAA++PK FVLNAS+ V ESNSRTSS NKKTQNPII IDN
Sbjct: 2   FSKTLKGTCRTGIYVPSDIRLAARSPKSFVLNASVSVNESNSRTSSLNKKTQNPIIVIDN 61

Query: 96  YDSFTYNLCQVI 108
           YDSFTYNLCQ +
Sbjct: 62  YDSFTYNLCQYV 73

[Close]
BLAST of Clc06G09140 vs. TAIR 10
Match: AT5G57890.1 (Glutamine amidotransferase type 1 family protein )

HSP 1 Score: 51.6 bits (122), Expect = 5.3e-07
Identity = 35/88 (39.77%), Postives = 48/88 (54.55%), Query Frame = 0 

Query: 18  MVAITQSSTSLCLPKSLWFSRTSKVTCRTGLFVPSDICLAAKNPKRFVLNASILVIESNS 77
           M A T  ++ L  PK  + +R    +    L  P+ + +  K+ +  +  ASI + ESNS
Sbjct: 1   MAATTLYNSCLLQPKYGFTTRRLNQSLVNSLTNPTRVSVLWKSRRDVIAKASIEMAESNS 60

Query: 78  RTSSSNKKTQNPIIAIDNYDSFTYNLCQ 106
             SS    +  PII IDNYDSFTYNLCQ
Sbjct: 61  -ISSVVVNSSGPIIVIDNYDSFTYNLCQ 87

[Close]
BLAST of Clc06G09140 vs. TAIR 10
Match: AT1G25220.2 (anthranilate synthase beta subunit 1 )

HSP 1 Score: 51.2 bits (121), Expect = 6.9e-07
Identity = 37/95 (38.95%), Postives = 48/95 (50.53%), Query Frame = 0 

Query: 18  MVAITQSSTSLCLPKSLWFSRTSKVTCRTGLFVPSDICLAAKNPKRFVLNASILVIESNS 77
           M A T   + L  PKS   +R    +    L  P+ + +  K+ +     ASI + ESNS
Sbjct: 1   MAASTLYKSCLLQPKSGSTTRRLNPSLVNPLTNPTRVSVLGKSRRDVFAKASIEMAESNS 60

Query: 78  RTS--SSNKKTQNPIIAIDNYDSFTYNLCQVITRF 111
             S   ++ K   PII IDNYDSFTYNLCQ    F
Sbjct: 61  IPSVVVNSSKQHGPIIVIDNYDSFTYNLCQYKQNF 95

[Close]
BLAST of Clc06G09140 vs. TAIR 10
Match: AT1G25220.1 (anthranilate synthase beta subunit 1 )

HSP 1 Score: 50.8 bits (120), Expect = 9.0e-07
Identity = 36/90 (40.00%), Postives = 47/90 (52.22%), Query Frame = 0 

Query: 18  MVAITQSSTSLCLPKSLWFSRTSKVTCRTGLFVPSDICLAAKNPKRFVLNASILVIESNS 77
           M A T   + L  PKS   +R    +    L  P+ + +  K+ +     ASI + ESNS
Sbjct: 1   MAASTLYKSCLLQPKSGSTTRRLNPSLVNPLTNPTRVSVLGKSRRDVFAKASIEMAESNS 60

Query: 78  RTS--SSNKKTQNPIIAIDNYDSFTYNLCQ 106
             S   ++ K   PII IDNYDSFTYNLCQ
Sbjct: 61  IPSVVVNSSKQHGPIIVIDNYDSFTYNLCQ 90

[Close]
BLAST of Clc06G09140 vs. TAIR 10
Match: AT1G25083.1 (Glutamine amidotransferase type 1 family protein )

HSP 1 Score: 41.6 bits (96), Expect = 5.5e-04
Identity = 22/34 (64.71%), Postives = 24/34 (70.59%), Query Frame = 0 

Query: 74  ESNSRTS--SSNKKTQNPIIAIDNYDSFTYNLCQ 106
           ESNS  S   ++ K   PII IDNYDSFTYNLCQ
Sbjct: 3   ESNSIPSVVINSSKQNGPIIVIDNYDSFTYNLCQ 36

[Close]
BLAST of Clc06G09140 vs. TAIR 10
Match: AT1G24807.1 (Glutamine amidotransferase type 1 family protein )

HSP 1 Score: 41.6 bits (96), Expect = 5.5e-04
Identity = 23/39 (58.97%), Postives = 25/39 (64.10%), Query Frame = 0 

Query: 74  ESNSRTS--SSNKKTQNPIIAIDNYDSFTYNLCQVITRF 111
           ESNS  S   ++ K   PII IDNYDSFTYNLCQ    F
Sbjct: 3   ESNSIPSVVINSSKQNGPIIVIDNYDSFTYNLCQYKQNF 41

The following BLAST results are available for this feature:
BLAST of Clc06G09140 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004142292.17.9e-2978.89anthranilate synthase beta subunit 2, chloroplastic [Cucumis sativus] >XP_011654... [more]
XP_038893244.11.3e-2679.78anthranilate synthase beta subunit 2, chloroplastic-like [Benincasa hispida] >XP... [more]
XP_022943100.12.9e-2365.42anthranilate synthase beta subunit 2, chloroplastic-like isoform X1 [Cucurbita m... [more]
XP_022989805.13.8e-2365.42anthranilate synthase beta subunit 2, chloroplastic-like isoform X2 [Cucurbita m... [more]
XP_022989797.13.8e-2365.42anthranilate synthase beta subunit 2, chloroplastic-like isoform X1 [Cucurbita m... [more]
BLAST of Clc06G09140 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9FJM57.5e-0639.77Anthranilate synthase beta subunit 2, chloroplastic OS=Arabidopsis thaliana OX=3... [more]
Q425651.3e-0540.00Anthranilate synthase beta subunit 1, chloroplastic OS=Arabidopsis thaliana OX=3... [more]
BLAST of Clc06G09140 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KMN83.8e-2978.89Glutamine amidotransferase type-1 domain-containing protein OS=Cucumis sativus O... [more]
A0A6J1FXD61.4e-2365.42anthranilate synthase beta subunit 2, chloroplastic-like isoform X1 OS=Cucurbita... [more]
A0A6J1JND91.8e-2365.42anthranilate synthase beta subunit 2, chloroplastic-like isoform X2 OS=Cucurbita... [more]
A0A6J1JGT41.8e-2365.42anthranilate synthase beta subunit 2, chloroplastic-like isoform X1 OS=Cucurbita... [more]
A0A1S3BZE14.5e-2277.78anthranilate synthase beta subunit 1, chloroplastic-like OS=Cucumis melo OX=3656... [more]
BLAST of Clc06G09140 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G57890.15.3e-0739.77Glutamine amidotransferase type 1 family protein [more]
AT1G25220.26.9e-0738.95anthranilate synthase beta subunit 1 [more]
AT1G25220.19.0e-0740.00anthranilate synthase beta subunit 1 [more]
AT1G25083.15.5e-0464.71Glutamine amidotransferase type 1 family protein [more]
AT1G24807.15.5e-0458.97Glutamine amidotransferase type 1 family protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc06G09140.2Clc06G09140.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000162 tryptophan biosynthetic process