Clc06G09010 (gene) Watermelon (cordophanus) v2

Overview
NameClc06G09010
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionReverse transcriptase domain-containing protein
LocationClcChr06: 11315963 .. 11316946 (+)
RNA-Seq ExpressionClc06G09010
SyntenyClc06G09010
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAAACTTCTTTTGGGAAGGTCACAAAGGAGGCAAGTTAAACCACTTGGCCAAATGGGAGCTTGTTACAAGACTTAAAAGATGGGGGACTCGGTCTTGGAAATGTGAGATTGAAAAATGTTGCCTTGCTTGCAAAATGGGGATGACGCTTCACAAGGGAAACAGAAGCTCTTTTGTATTTAGTCATCAAGAGTATTCATGGAAATGGCCTCTTTGATTGGCATACAAATGGCAAAGGAAATGGAAGTTTGAGAAGTCCTTGGACAAGCATCTCTAAACAGTGGCTAAAAGAGGAGGTTCTGGCTGAATTTAAAGTTGGAAATGGAAGTAGAATATCATTTTAGCTGGACCCATGGATTGATAAATTATCCCTAAGCTCAAAATTCCCAAACCTCTTCAAGATAGCAGCCAAACCTAATGGCTCAGTGGCAGATTATTGGGATCCCACCACTTCCTCATGGGATATCTCTTTCAGAAGGCTGTTAAAAGATGAAGAAATTTCTGATTTTCAGCAACTATTAGCAGCAATTGATAATAAATCAGTGGTATAAAGGCCGGACAGAAGATCTTGGTCATTGGAACCTAATGGGATTTTTTCAGTTAAGTCCCTAACTAAGCATCTTTCATTGGCATCCCCCATTGAGAAAGAGCTGGAAAAATCCCTTTGGCATACCAAAAGCCCTTGAAGAATTAATATCACGGTATGGATAATGATTTTTGGATCATTAAATTGCGCTGCCATTCTCCAAAAAAGGCTCCCCTCCCATTCTTTATCACCCCACATGTGGCCTTTATGTTTATCTAACCAAGAAGATATGCAGCACCTCTTCTTCTGTTGTAGTTACACAGTAAATTGTTGGCACCGGCTGTTTAATATCTTCCAAGTTTGCTGGGTTTTCGATGGTTCCTTCAGCTGCAATGTGCGGCAATTATTGGCTGGTCCAGCTTTGGAAAAGGAGGCACAACTTCTATGATGCAATGA

mRNA sequence

ATGAGAAACTTCTTTTGGGAAGGTCACAAAGGAGGCAAGTTAAACCACTTGGCCAAATGGGAGCTTGTTACAAGACTTAAAAGATGGGGGACTCGGTCTTGGAAATTCATCAAGAGTATTCATGGAAATGGCCTCTTTGATTGGCATACAAATGGCAAAGGAAATGGAAGTTTGAGAAGTCCTTGGACAAGCATCTCTAAACAGTGGCTAAAAGAGGAGATAGCAGCCAAACCTAATGGCTCAGTGGCAGATTATTGGGATCCCACCACTTCCTCATGGGATATCTCTTTCAGAAGGCTGTTAAAAGATGAAGAAATTTCTGATTTTCAGCAACTATTAGCAGCAATTGATAATAAATCAGTGCTGCAATGTGCGGCAATTATTGGCTGGTCCAGCTTTGGAAAAGGAGGCACAACTTCTATGATGCAATGA

Coding sequence (CDS)

ATGAGAAACTTCTTTTGGGAAGGTCACAAAGGAGGCAAGTTAAACCACTTGGCCAAATGGGAGCTTGTTACAAGACTTAAAAGATGGGGGACTCGGTCTTGGAAATTCATCAAGAGTATTCATGGAAATGGCCTCTTTGATTGGCATACAAATGGCAAAGGAAATGGAAGTTTGAGAAGTCCTTGGACAAGCATCTCTAAACAGTGGCTAAAAGAGGAGATAGCAGCCAAACCTAATGGCTCAGTGGCAGATTATTGGGATCCCACCACTTCCTCATGGGATATCTCTTTCAGAAGGCTGTTAAAAGATGAAGAAATTTCTGATTTTCAGCAACTATTAGCAGCAATTGATAATAAATCAGTGCTGCAATGTGCGGCAATTATTGGCTGGTCCAGCTTTGGAAAAGGAGGCACAACTTCTATGATGCAATGA

Protein sequence

MRNFFWEGHKGGKLNHLAKWELVTRLKRWGTRSWKFIKSIHGNGLFDWHTNGKGNGSLRSPWTSISKQWLKEEIAAKPNGSVADYWDPTTSSWDISFRRLLKDEEISDFQQLLAAIDNKSVLQCAAIIGWSSFGKGGTTSMMQ
Homology
BLAST of Clc06G09010 vs. NCBI nr
Match: TYJ97221.1 (putative LRR receptor-like serine/threonine-protein kinase [Cucumis melo var. makuwa])

HSP 1 Score: 114.4 bits (285), Expect = 8.2e-22
Identity = 70/166 (42.17%), Postives = 79/166 (47.59%), Query Frame = 0

Query: 2   RNFFWEGHKGGKLNHLAKWELVT-------------------RLKRWGTR--------SW 61
           RNFFWEG  G KLNHL KW LV+                    L +WG R          
Sbjct: 124 RNFFWEGSSGSKLNHLVKWNLVSLSLKGVGLGLGALKTHNSALLAKWGWRFAMEDFSFGR 183

Query: 62  KFIKSIHGNGLFDWHTNGKGNGSLRSPWTSISKQWLKEE---------IAAKPNGSVADY 121
           K I SIHG   FDW T  K   SLRSPW SISK W   E         IA  P G VAD+
Sbjct: 184 KIICSIHGKEPFDWFTLEKFGNSLRSPWFSISKVWRSVESLALTKLGRIALLPQGLVADH 243

Query: 122 WDPTTSSWDISFRRLLKDEEISDFQQLLAAIDNKSVLQCAAIIGWS 132
           WD  T SW + FRR LKD EI +F+  L+ +  + VL       WS
Sbjct: 244 WDFATLSWSLPFRRSLKDAEIVEFESFLSLLLGEQVLDLEDHKVWS 289

BLAST of Clc06G09010 vs. NCBI nr
Match: KAA0032570.1 (protein SAND [Cucumis melo var. makuwa] >TYK20915.1 protein SAND [Cucumis melo var. makuwa])

HSP 1 Score: 110.9 bits (276), Expect = 9.0e-21
Identity = 69/178 (38.76%), Postives = 87/178 (48.88%), Query Frame = 0

Query: 4   FFWEGHKGGKLNHLAKWELVTR-------------------LKRWGTR-------SW-KF 63
           FFWEG+   KLN+L KWELVT+                   L +W  R        W K 
Sbjct: 186 FFWEGNIDSKLNNLVKWELVTKSQGDGELGLDKLKIRNMALLAKWRWRFLDEPSSLWCKV 245

Query: 64  IKSIHGNGLFDWHTNGKGNGSLRSPWTSISKQ---------------------------- 120
           ++SIH +  F WHT+GK + SLRSPW SIS+Q                            
Sbjct: 246 VRSIHDSDTFIWHTSGKESSSLRSPWISISRQQRKVEILAVFKVGKGDRILFWLDPWMNS 305

BLAST of Clc06G09010 vs. NCBI nr
Match: TYK06564.1 (hypothetical protein E5676_scaffold453G00250 [Cucumis melo var. makuwa])

HSP 1 Score: 107.1 bits (266), Expect = 1.3e-19
Identity = 68/189 (35.98%), Postives = 84/189 (44.44%), Query Frame = 0

Query: 1   MRNFFWEGHKGGKLNHLAKWELV------------TRLKRWGTRSWKFI----------- 60
           +RN FWEGH G ++NHL KW  V            T L +WG   W FI           
Sbjct: 28  LRNCFWEGHSGSRINHLVKWGRVTLGLKGLSNKNTTLLAKWG---WIFIEEEESLWRQVV 87

Query: 61  KSIHGNGLFDWHTNGKGNGSLRSPWTSI------------------------SKQWLKE- 120
           +SI+G     WHT GK   SL+SPW  I                        S  W++E 
Sbjct: 88  RSIYGKESCSWHTIGKFGNSLKSPWIGISMVRRKLETLTSFKLGNGNRIAFWSDVWVEET 147

Query: 121 ----------EIAAKPNGSVADYWDPTTSSWDISFRRLLKDEEISDFQQLLAAIDNKSVL 132
                      ++  PNGSVA  WD +T SW I FRRL K+EEIS+FQQLL  + N+ V 
Sbjct: 148 SFRTCFSMLFRVSLMPNGSVAALWDNSTLSWSIMFRRLFKEEEISEFQQLLHLLSNRQVA 207

BLAST of Clc06G09010 vs. NCBI nr
Match: XP_038880332.1 (uncharacterized protein LOC120071973 [Benincasa hispida])

HSP 1 Score: 97.1 bits (240), Expect = 1.3e-16
Identity = 50/103 (48.54%), Postives = 60/103 (58.25%), Query Frame = 0

Query: 1   MRNFFWEGHKGGKLNHLAKWELVTR-------------------LKRWGTR-------SW 60
           M+NFFWEGHKGGK+NHL KWELVT+                   L +WG R        W
Sbjct: 235 MKNFFWEGHKGGKINHLVKWELVTKAQEDGGLGLGGLRARNLAFLAKWGWRLLHNENTLW 294

Query: 61  -KFIKSIHGNGLFDWHTNGKGNGSLRSPWTSISKQWLKEEIAA 77
            K +KSIH   +FDWHT+GK + +LRS W SIS+ WLK E  A
Sbjct: 295 SKVVKSIHRRDMFDWHTSGKVSLNLRSSWISISRSWLKVEALA 337

BLAST of Clc06G09010 vs. NCBI nr
Match: TYK14440.1 (uncharacterized protein E5676_scaffold186G00990 [Cucumis melo var. makuwa])

HSP 1 Score: 95.5 bits (236), Expect = 3.9e-16
Identity = 56/160 (35.00%), Postives = 67/160 (41.88%), Query Frame = 0

Query: 1   MRNFFWEGHKGGKLNHLAKWELVTR-------------------LKRWGTRSWK------ 60
           +RNFFWEG+ G K+NH   W+ VT                    L +WG R  K      
Sbjct: 29  IRNFFWEGNSGSKINHFVSWKKVTSSLLDGRLGLGGIRNKSMALLAKWGWRYMKENTALW 88

Query: 61  --FIKSIHGNGLFDWHTNGKGNGSLRSPWTSISKQWLKEEIAAK---------------- 102
              ++SIHG   FDW T  K   SLRSPW  IS++W K EI A                 
Sbjct: 89  RQVLRSIHGRETFDWRTQSKSRNSLRSPWVDISREWEKVEILAPFKLGGGRRVTFWADSW 148

BLAST of Clc06G09010 vs. ExPASy TrEMBL
Match: A0A5D3BF26 (Putative LRR receptor-like serine/threonine-protein kinase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G00080 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 4.0e-22
Identity = 70/166 (42.17%), Postives = 79/166 (47.59%), Query Frame = 0

Query: 2   RNFFWEGHKGGKLNHLAKWELVT-------------------RLKRWGTR--------SW 61
           RNFFWEG  G KLNHL KW LV+                    L +WG R          
Sbjct: 124 RNFFWEGSSGSKLNHLVKWNLVSLSLKGVGLGLGALKTHNSALLAKWGWRFAMEDFSFGR 183

Query: 62  KFIKSIHGNGLFDWHTNGKGNGSLRSPWTSISKQWLKEE---------IAAKPNGSVADY 121
           K I SIHG   FDW T  K   SLRSPW SISK W   E         IA  P G VAD+
Sbjct: 184 KIICSIHGKEPFDWFTLEKFGNSLRSPWFSISKVWRSVESLALTKLGRIALLPQGLVADH 243

Query: 122 WDPTTSSWDISFRRLLKDEEISDFQQLLAAIDNKSVLQCAAIIGWS 132
           WD  T SW + FRR LKD EI +F+  L+ +  + VL       WS
Sbjct: 244 WDFATLSWSLPFRRSLKDAEIVEFESFLSLLLGEQVLDLEDHKVWS 289

BLAST of Clc06G09010 vs. ExPASy TrEMBL
Match: A0A5A7SP09 (Vacuolar fusion protein MON1 homolog OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold284G00570 PE=3 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 4.4e-21
Identity = 69/178 (38.76%), Postives = 87/178 (48.88%), Query Frame = 0

Query: 4   FFWEGHKGGKLNHLAKWELVTR-------------------LKRWGTR-------SW-KF 63
           FFWEG+   KLN+L KWELVT+                   L +W  R        W K 
Sbjct: 186 FFWEGNIDSKLNNLVKWELVTKSQGDGELGLDKLKIRNMALLAKWRWRFLDEPSSLWCKV 245

Query: 64  IKSIHGNGLFDWHTNGKGNGSLRSPWTSISKQ---------------------------- 120
           ++SIH +  F WHT+GK + SLRSPW SIS+Q                            
Sbjct: 246 VRSIHDSDTFIWHTSGKESSSLRSPWISISRQQRKVEILAVFKVGKGDRILFWLDPWMNS 305

BLAST of Clc06G09010 vs. ExPASy TrEMBL
Match: A0A5D3C5F2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold453G00250 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 6.3e-20
Identity = 68/189 (35.98%), Postives = 84/189 (44.44%), Query Frame = 0

Query: 1   MRNFFWEGHKGGKLNHLAKWELV------------TRLKRWGTRSWKFI----------- 60
           +RN FWEGH G ++NHL KW  V            T L +WG   W FI           
Sbjct: 28  LRNCFWEGHSGSRINHLVKWGRVTLGLKGLSNKNTTLLAKWG---WIFIEEEESLWRQVV 87

Query: 61  KSIHGNGLFDWHTNGKGNGSLRSPWTSI------------------------SKQWLKE- 120
           +SI+G     WHT GK   SL+SPW  I                        S  W++E 
Sbjct: 88  RSIYGKESCSWHTIGKFGNSLKSPWIGISMVRRKLETLTSFKLGNGNRIAFWSDVWVEET 147

Query: 121 ----------EIAAKPNGSVADYWDPTTSSWDISFRRLLKDEEISDFQQLLAAIDNKSVL 132
                      ++  PNGSVA  WD +T SW I FRRL K+EEIS+FQQLL  + N+ V 
Sbjct: 148 SFRTCFSMLFRVSLMPNGSVAALWDNSTLSWSIMFRRLFKEEEISEFQQLLHLLSNRQVA 207

BLAST of Clc06G09010 vs. ExPASy TrEMBL
Match: A0A5D3CSP2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold186G00990 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.9e-16
Identity = 56/160 (35.00%), Postives = 67/160 (41.88%), Query Frame = 0

Query: 1   MRNFFWEGHKGGKLNHLAKWELVTR-------------------LKRWGTRSWK------ 60
           +RNFFWEG+ G K+NH   W+ VT                    L +WG R  K      
Sbjct: 29  IRNFFWEGNSGSKINHFVSWKKVTSSLLDGRLGLGGIRNKSMALLAKWGWRYMKENTALW 88

Query: 61  --FIKSIHGNGLFDWHTNGKGNGSLRSPWTSISKQWLKEEIAAK---------------- 102
              ++SIHG   FDW T  K   SLRSPW  IS++W K EI A                 
Sbjct: 89  RQVLRSIHGRETFDWRTQSKSRNSLRSPWVDISREWEKVEILAPFKLGGGRRVTFWADSW 148

BLAST of Clc06G09010 vs. ExPASy TrEMBL
Match: A0A5D3DH32 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold584G00340 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 5.5e-16
Identity = 53/119 (44.54%), Postives = 60/119 (50.42%), Query Frame = 0

Query: 31  TRSWK-FIKSIHGNGLFDWHTNGKGNGSLRSPWTSISKQWLKEEIAAK------------ 90
           T  W+  I+SIHG+  FDWHT  K   SLRSPW SIS++W K EI A             
Sbjct: 5   TAMWRQVIRSIHGSETFDWHTQSKSGNSLRSPWVSISREWKKVEILAPFKLGNGRRVAFW 64

Query: 91  -----------------------PNGSVADYWDPTTSSWDISFRRLLKDEEISDFQQLL 114
                                  P GSVA +WD  T+SW I FRRLLKDEEI DFQ LL
Sbjct: 65  ADSWAREIPLKTQNSKLFKIALLPIGSVAAHWDSDTNSWAIVFRRLLKDEEIQDFQSLL 123

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYJ97221.18.2e-2242.17putative LRR receptor-like serine/threonine-protein kinase [Cucumis melo var. ma... [more]
KAA0032570.19.0e-2138.76protein SAND [Cucumis melo var. makuwa] >TYK20915.1 protein SAND [Cucumis melo v... [more]
TYK06564.11.3e-1935.98hypothetical protein E5676_scaffold453G00250 [Cucumis melo var. makuwa][more]
XP_038880332.11.3e-1648.54uncharacterized protein LOC120071973 [Benincasa hispida][more]
TYK14440.13.9e-1635.00uncharacterized protein E5676_scaffold186G00990 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BF264.0e-2242.17Putative LRR receptor-like serine/threonine-protein kinase OS=Cucumis melo var. ... [more]
A0A5A7SP094.4e-2138.76Vacuolar fusion protein MON1 homolog OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5D3C5F26.3e-2035.98Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3CSP21.9e-1635.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3DH325.5e-1644.54Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc06G09010.1Clc06G09010.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding
molecular_function GO:0003824 catalytic activity