Clc06G08920 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc06G08920
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Unknown protein
Location	ClcChr06: 10998824 .. 11001158 (-)
RNA-Seq Expression	Clc06G08920
Synteny	Clc06G08920

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGTCTGTCACTCGCAGTTCAAATTCCTTTGCCATGGTCTGTGCCTTGAAACTCGAGACTCGCTGCTATATAAGAGCATTGAAACACAGGCAAAACCCAACCCACCAATTCATTCAGCTTAGTCTTCAGATACTTACAATATCTCTTCAGCAAGTTGGTTCCAGGAGCACCTCCATGGCGTCTTTGAAGGCTGAAAAACCTGCTCAACAAGTTGGGCAGTCTAAGAAGGAAGCTAAACCTAGCGATACTGCAGTGAAAGCTTCGCCCTCGAAGTCCAATTCAGCCTCGAAGAAGCCTGCTCAAAGATCTCAAGATCCCCCTAAAAAGGTACACACTAGTTAACTGTTTTATGATTTTAATTTTTAAACATGTTTTGAGTTTATGTATAATGTAATCATTTTCTCTCATCCTTGGTTGTGTAGAGGAAAGGGGGCAAGTCTGCTGTAAAGCATTAAATGAAAAAAGGCTGTTTCCATTTGCTTGAAAGATGAGCTAAGGCAGCAAATTGCCATTCTATTTTAGTCTGCTTTGTTATGTTTATCGTTGTATTTTAATCAGTGTCACAAGAGAGGAGCTCTCATATCTGAAATAAAAATAGGTTTCACTTACATAGCCACAAAGAGTAGAAACTCGAGTGCAGGTCAACATGAGAAAATTTATCAATCAATGCATATGATATAATAATTCTTATTATGTTTTAAATCAATAACCCTGAACACATATATTTGGCTATACACACACACAGCATCATTGAGAAAAAGTAATCAAGTTAGCAGATCAGAATGGGCTAACATTACGTGCTAACTTCAACAATAACTCCGGTACAAGGCGCCTCCTTCGGCGAGCCACTGCATCTGTGGCAAGAGCATCCCTATCATTTTCATGAATGATGAAAATCAAATCTTCAACCAACTGATCTTTACCACCTCTCATTGGATCCTATGTTAGAATTTGAGAAAAATTTTAGAACCCAACACCTAGGCATAATAAGCTTAGTATGTTTGTGATATAATAAAAAGGCAGAAGGGTAATGGCAATTTACTTTTATTACAGCACCAATAGGAGCCTACAAAAATGTTTTGCTCTCACCTGGACAAACAAATCTGTATGCGTCTTTCCTTTGTAAAGAACTGTTTCAACTTTTACTCCAAGTCTTTCAAGCACCTCTGCAAAGCTCTTACTACAGAAGAATTAAAACACAAAATAATGTAATGCATGTCTGCAGAAATATTGGCATACCTCTACCTCCAGCAAATTCAAATAACAAGCTGAATTCTCAAACTAGCATTGATATTTCTTAAGATTTTAAAACGAGAGATTTTGGGCTATTGGACAATCTGATGCGTCTGAGGAGAAAAGGACTTCTGGCAAAAGATCTTTTATATTCATATAATAGTGCATTAAAATAAACCTTGAATGTTATTTTATTCATATTTAGCACCATTTCTCATGCATAAAATATAGCAAGAGTTGTGAAAAAGAAAATTTACCTGGCATCTGATGGTATGGAATAATCTGCAGTTCCATGAAATAGAGTCAAGTGTGGAAGCAGGGAAACTGCATCTTTAATCTTTGGATCCTGTACAATAACCTCGGGAGAAAATCTTTGCAGGGACTCTTCTCCTTCCATTATGCTATATTAGACATTCAAGAAGTTACAAATTTATGTACTGAATGAATGCATAGTAAAATAAAAGAAAAAGAATGTGTTTACCTTAAAAAGATGGATCTGTGAAGACCTCGACCATGAAAGTAGTCCTTCAGATTTACCAAATTGTACCTATGTATGGAAGTTGATGTTGCATAAAACAAGAAGAAACTATATAGCTGGAAAACCCATGGCACAAGAAAAAAAAAATAAAACCTATTTAATAATAACTACTATTTAATAATAACTAACTTTTAAAATTTTATTTCTACACAAAATTCAAAGTTTGTATAACTCTAGCTGTCGTCCTCAAATAGGGCATCATACTTCTGGTTCTGGCAGGTAATTTGGCGTTTGCAGCCACAGACCAGTTAAAATGTCCTTAAATTCACTTAACACATAAGTTGGTACTCTAATTTGATACATTATTCATTGAGGAGGCACTCTTTACTTATCACTTGCTACAATCTAAAAAATGTATTACACGTGCACATTGACAGGGATTGTTTAACAGTGATCGTACTCCTCAACTCTCAGCTAAATAATAAAGAGCATGGTAAAATAAATTTCCTATCAGTAGCCAGAAAAATAAATTGTGGAGTAAAGAAATGGCCTTTCTATATGCATTTAGAATTGTCACTAAAAGAGTTCAATAGCACTTACCCCCCTGACAAACCAAAGTAA

mRNA sequence

ATGTTGTCTGTCACTCGCAGTTCAAATTCCTTTGCCATGGTCTGTGCCTTGAAACTCGAGACTCGCTGCTATATAAGAGCATTGAAACACAGGCAAAACCCAACCCACCAATTCATTCAGCTTAGTCTTCAGATACTTACAATATCTCTTCAGCAAGTTGGTTCCAGGAGCACCTCCATGGCGTCTTTGAAGGCTGAAAAACCTGCTCAACAAGTTGGGCAGTCTAAGAAGGAAGCTAAACCTAGCGATACTGCAGTGAAAGCTTCGCCCTCGAAGTCCAATTCAGCCTCGAAGAAGCCTGCTCAAAGATCTCAAGATCCCCCTAAAAAGTCTGCTTTGTTATGTTTATCGTTGTATTTTAATCAGTGTCACAAGAGAGGAGCTCTCATATCTGAAATAAAAATAGGTTTCACTTACATAGCCACAAAGAGTAGAAACTCGAGTGCAGGTAATTTGGCGTTTGCAGCCACAGACCAGGATTGTTTAACAGTGATCGTACTCCTCAACTCTCAGCTAAATAATAAAGAGCATGGTAAAATAAATTTCCTATCAGTAGCCAGAAAAATAAATTGTGGAGTAAAGAAATGGCCTTTCTATATGCATTTAGAATTGTCACTAAAAGAGTTCAATAGCACTTACCCCCCTGACAAACCAAAGTAA

Coding sequence (CDS)

ATGTTGTCTGTCACTCGCAGTTCAAATTCCTTTGCCATGGTCTGTGCCTTGAAACTCGAGACTCGCTGCTATATAAGAGCATTGAAACACAGGCAAAACCCAACCCACCAATTCATTCAGCTTAGTCTTCAGATACTTACAATATCTCTTCAGCAAGTTGGTTCCAGGAGCACCTCCATGGCGTCTTTGAAGGCTGAAAAACCTGCTCAACAAGTTGGGCAGTCTAAGAAGGAAGCTAAACCTAGCGATACTGCAGTGAAAGCTTCGCCCTCGAAGTCCAATTCAGCCTCGAAGAAGCCTGCTCAAAGATCTCAAGATCCCCCTAAAAAGTCTGCTTTGTTATGTTTATCGTTGTATTTTAATCAGTGTCACAAGAGAGGAGCTCTCATATCTGAAATAAAAATAGGTTTCACTTACATAGCCACAAAGAGTAGAAACTCGAGTGCAGGTAATTTGGCGTTTGCAGCCACAGACCAGGATTGTTTAACAGTGATCGTACTCCTCAACTCTCAGCTAAATAATAAAGAGCATGGTAAAATAAATTTCCTATCAGTAGCCAGAAAAATAAATTGTGGAGTAAAGAAATGGCCTTTCTATATGCATTTAGAATTGTCACTAAAAGAGTTCAATAGCACTTACCCCCCTGACAAACCAAAGTAA

Protein sequence

MLSVTRSSNSFAMVCALKLETRCYIRALKHRQNPTHQFIQLSLQILTISLQQVGSRSTSMASLKAEKPAQQVGQSKKEAKPSDTAVKASPSKSNSASKKPAQRSQDPPKKSALLCLSLYFNQCHKRGALISEIKIGFTYIATKSRNSSAGNLAFAATDQDCLTVIVLLNSQLNNKEHGKINFLSVARKINCGVKKWPFYMHLELSLKEFNSTYPPDKPK

Homology

The following BLAST results are available for this feature:

BLAST of Clc06G08920 vs.


Match Name	E-value	Identity	Description

BLAST of Clc06G08920 vs.


Match Name	E-value	Identity	Description

BLAST of Clc06G08920 vs.


Match Name	E-value	Identity	Description

BLAST of Clc06G08920 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 86..102
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..108

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc06G08920.2	Clc06G08920.2	mRNA