Clc06G08230 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc06G08230
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Ulp1-like peptidase
Location	ClcChr06: 9465309 .. 9466750 (+)
RNA-Seq Expression	Clc06G08230
Synteny	Clc06G08230

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTAGCTTCAAGGGTGCACTTAATGGGAAAGTGTCACTGTACAAAAAGAAGTCTGCATCACTCGAGTCATACAGCTTATATCAATTTCCTTTTGCTTTTGAGGTTCGTTAAGTTTGTATTATCATGATTTTTGTTCTATTTCGACTCTATCATGCACTAACAGTTGCTTGTTTGTTTTTAAATTGGTAGGTTTAGGCGTGCGAGATAGTTTCTTCACTTAGCAGACGAGTTGCTAATAGGGTTTCCCCTGATGCAATGTCGTGCATCATGTGATAGAGTTGCACGTATTAACCTAGATCCAAGGTGATTCAAACACAGGTTTTTGGATATCAAGTGGTAAGTTGTGCTTCTTAACGTTTTATATTATGGGTTAGGGTTTAAGGTTCTAATTTTGTTTAGGGTTTGGGGTTCTAATTTTGTTTATTGTTGATTACATCCAGACTCGTATAAATGCCATCGATCCGACTAATGAAAAGCAGGCCTACTTGAGTCGTACGTTAGACCTTCCAATTTCAAATGGGTATGTAGCACCTGCCCCTCCTCCACTAGAGAACATTGTTCGTGATACACGGTTGGGTGATGAGAGTGAGGAACGAGGGATTGGTGAAGATACGTAGGTGGGTGGTCCTTCTATATATTCTAATCCACCTGTGAGTTAGCCACTTGTGAGTCAGTCACTTGTGACACGTCCACCTGAGATTACCCTACCTGCGAGGATTATATCTACTGGTTCTCAGACCACGTGTGAGTGCAATCAACATTTACAACATTTGGAGTGTAAGTTGGATCGAATGGAGTACTCATTACGATTGAGTTGAAGGCCATACATGACATGTTGATGTTGATAATGAAGGTAAAATAACTAGACCTTGCTCAGTTGTGAATTTCTGTGCTTTAAATTTAAAAAATTTAATATCATTTCTAGGGTAAGTCAATTGAATTGCAGCAGTATTATGGTGTTGGAGAAGGCCCGTCGTTTCAAGAACCAGTTGCTCAAGATCAACCTGTTGACAATCCACCTATTGACGAGCACACACGGTTTCTCGATCCACCTATTCCTAATGATACTCTTGTTGTTGATCCCATAGACAAGGACTCGGATGATGGAGAAGGCGTCGTCCCCATAAATGTATCATTGGGAGGCAAAGATACGATTGGTCCATCAGATGTTCCATTGAAGAAGCCGAAGGACGAGGTATGATCTTCTGCATCTAATACTTGATACATTTTGATGTTCCTTAATATGGTTTCTTTGTATGCAGCCTTTGGATTTTGACAGCGACGTCATTCCGTTGTCTTAGTCTCTGGAAGTGGTTTGTAAGAAAATGCCTACGAGAAAGAGGAGGGCACCAAGGAAGCTCCGTAGTCCAATGATGGATCAACCAGTAAGGAGAAGGAGGAAGATGTTGAACTGGTATGGCAACCCTAGAGGGGGGTGA

mRNA sequence

ATGAGTAGCTTCAAGGGTGCACTTAATGGGAAAGTGTCACTGTACAAAAAGAAGTCTGCATCACTCGAGTCATACAGCTTATATCAATTTCCTTTTGCTTTTGAGACTCGTATAAATGCCATCGATCCGACTAATGAAAAGCAGGCCTACTTGAGTCGTACGTTAGACCTTCCAATTTCAAATGGGTATGTAGCACCTGCCCCTCCTCCACTAGAGAACATTGTTCGTGATACACGGTTGGGTGATGAGAGTGAGGAACGAGGGATTGGTGAAGATACACCACGTGTGAGTGCAATCAACATTTACAACATTTGGAGTCAGTATTATGGTGTTGGAGAAGGCCCGTCGTTTCAAGAACCAGTTGCTCAAGATCAACCTGTTGACAATCCACCTATTGACGAGCACACACGGTTTCTCGATCCACCTATTCCTAATGATACTCTTGTTGTTGATCCCATAGACAAGGACTCGGATGATGGAGAAGGCGTCGTCCCCATAAATGTATCATTGGGAGGCAAAGATACGATTGGTCCATCAGATGTTCCATTGAAGAAGCCGAAGGACGAGTCTCTGGAAGTGGTTTGTAAGAAAATGCCTACGAGAAAGAGGAGGGCACCAAGGAAGCTCCGTAGTCCAATGATGGATCAACCAGTAAGGAGAAGGAGGAAGATGTTGAACTGGTATGGCAACCCTAGAGGGGGGTGA

Coding sequence (CDS)

ATGAGTAGCTTCAAGGGTGCACTTAATGGGAAAGTGTCACTGTACAAAAAGAAGTCTGCATCACTCGAGTCATACAGCTTATATCAATTTCCTTTTGCTTTTGAGACTCGTATAAATGCCATCGATCCGACTAATGAAAAGCAGGCCTACTTGAGTCGTACGTTAGACCTTCCAATTTCAAATGGGTATGTAGCACCTGCCCCTCCTCCACTAGAGAACATTGTTCGTGATACACGGTTGGGTGATGAGAGTGAGGAACGAGGGATTGGTGAAGATACACCACGTGTGAGTGCAATCAACATTTACAACATTTGGAGTCAGTATTATGGTGTTGGAGAAGGCCCGTCGTTTCAAGAACCAGTTGCTCAAGATCAACCTGTTGACAATCCACCTATTGACGAGCACACACGGTTTCTCGATCCACCTATTCCTAATGATACTCTTGTTGTTGATCCCATAGACAAGGACTCGGATGATGGAGAAGGCGTCGTCCCCATAAATGTATCATTGGGAGGCAAAGATACGATTGGTCCATCAGATGTTCCATTGAAGAAGCCGAAGGACGAGTCTCTGGAAGTGGTTTGTAAGAAAATGCCTACGAGAAAGAGGAGGGCACCAAGGAAGCTCCGTAGTCCAATGATGGATCAACCAGTAAGGAGAAGGAGGAAGATGTTGAACTGGTATGGCAACCCTAGAGGGGGGTGA

Protein sequence

MSSFKGALNGKVSLYKKKSASLESYSLYQFPFAFETRINAIDPTNEKQAYLSRTLDLPISNGYVAPAPPPLENIVRDTRLGDESEERGIGEDTPRVSAINIYNIWSQYYGVGEGPSFQEPVAQDQPVDNPPIDEHTRFLDPPIPNDTLVVDPIDKDSDDGEGVVPINVSLGGKDTIGPSDVPLKKPKDESLEVVCKKMPTRKRRAPRKLRSPMMDQPVRRRRKMLNWYGNPRGG

Homology

[Close]

BLAST of Clc06G08230 vs. NCBI nr
Match: TYK11124.1 (hypothetical protein E5676_scaffold66G00300 [Cucumis melo var. makuwa])

HSP 1 Score: 63.9 bits (154), Expect = 2.1e-06
Identity = 36/73 (49.32%), Postives = 47/73 (64.38%), Query Frame = 0


Query: 3  SFKGALNGKVSLYKKKSA---SLESYSLYQFPFAFETRINA---------IDPTNEKQAY 62
          S KG L GK++L+K K +   SLESYSLY F FAF+  I +         I+PTNEK A+
Sbjct: 7  SLKGVLRGKIALHKAKPSNKKSLESYSLYGFSFAFQVVIESQVFGHVYKVIEPTNEKLAH 66

Query: 63 LSRTLDLPISNGY 64
          L+R LD+P + GY
Sbjct: 67 LNRDLDIPSTEGY 79

[Close]

BLAST of Clc06G08230 vs. NCBI nr
Match: KAA0068109.1 (Ulp1-like peptidase [Cucumis melo var. makuwa] >TYK26092.1 Ulp1-like peptidase [Cucumis melo var. makuwa])

HSP 1 Score: 60.1 bits (144), Expect = 3.0e-05
Identity = 36/95 (37.89%), Postives = 50/95 (52.63%), Query Frame = 0


Query: 1   MSSFKGALNGKVSLYKKKSASL--ESYSLYQFPFAFET--------------------RI 60
           + S K AL GKV+++KKK  +   ESYSLY FPF F+T                    RI
Sbjct: 71  LGSLKEALRGKVTMHKKKPPNKFPESYSLYGFPFTFQTYKLMLSISRQVANRAWRDAARI 130

Query: 61  NAIDPTNEKQAYLSRTLDLPISNGYVAPAPPPLEN 74
            AI+P +E+  YL + LD+P + GY      PL++
Sbjct: 131 QAIEPIDEELVYLDQVLDIPFTEGYEDNPDAPLQD 165

[Close]

BLAST of Clc06G08230 vs. ExPASy TrEMBL
Match: A0A5D3CIW7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold66G00300 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.0e-06
Identity = 36/73 (49.32%), Postives = 47/73 (64.38%), Query Frame = 0


Query: 3  SFKGALNGKVSLYKKKSA---SLESYSLYQFPFAFETRINA---------IDPTNEKQAY 62
          S KG L GK++L+K K +   SLESYSLY F FAF+  I +         I+PTNEK A+
Sbjct: 7  SLKGVLRGKIALHKAKPSNKKSLESYSLYGFSFAFQVVIESQVFGHVYKVIEPTNEKLAH 66

Query: 63 LSRTLDLPISNGY 64
          L+R LD+P + GY
Sbjct: 67 LNRDLDIPSTEGY 79

[Close]

BLAST of Clc06G08230 vs. ExPASy TrEMBL
Match: A0A5D3DRB7 (Ulp1-like peptidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1185G00550 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.4e-05
Identity = 36/95 (37.89%), Postives = 50/95 (52.63%), Query Frame = 0


Query: 1   MSSFKGALNGKVSLYKKKSASL--ESYSLYQFPFAFET--------------------RI 60
           + S K AL GKV+++KKK  +   ESYSLY FPF F+T                    RI
Sbjct: 71  LGSLKEALRGKVTMHKKKPPNKFPESYSLYGFPFTFQTYKLMLSISRQVANRAWRDAARI 130

Query: 61  NAIDPTNEKQAYLSRTLDLPISNGYVAPAPPPLEN 74
            AI+P +E+  YL + LD+P + GY      PL++
Sbjct: 131 QAIEPIDEELVYLDQVLDIPFTEGYEDNPDAPLQD 165

The following BLAST results are available for this feature:

BLAST of Clc06G08230 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK11124.1	2.1e-06	49.32	hypothetical protein E5676_scaffold66G00300 [Cucumis melo var. makuwa]	[more]
KAA0068109.1	3.0e-05	37.89	Ulp1-like peptidase [Cucumis melo var. makuwa] >TYK26092.1 Ulp1-like peptidase [...	[more]

BLAST of Clc06G08230 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc06G08230 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CIW7	1.0e-06	49.32	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3DRB7	1.4e-05	37.89	Ulp1-like peptidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1185...	[more]

BLAST of Clc06G08230 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 168..220
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 180..199

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc06G08230.1	Clc06G08230.1	mRNA