Clc06G07970 (gene) Watermelon (cordophanus) v2

Overview
NameClc06G07970
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Descriptionsmall acidic protein 1
LocationClcChr06: 8719982 .. 8721910 (-)
RNA-Seq ExpressionClc06G07970
SyntenyClc06G07970
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGCCTACACCGATGGAATTCTTTGCGGAGCTGGAAGAACAAGGATCGACGGTCGCCATGGACGTGGACGATGTGGACCCACTTGAGATATTGGGCGAGGGTGTGATCTCCGCCGAGAACAAGCTTGCTGACGCCGATTTCTTCAATTCCTTTGAGGACGATTTTGATGACTCTGACATCAACTGAGATTCTTTTGGGTGGTTTCGTTCAAAAGTAGTTAATTTCCCAATTCTATGTTTTTGCTTCTCTTGATGAAACAAAGATGATAGATACTACCATGCCCTAGTTTGTTTTAGCCTTTAGGGATTTCACTGCTCTGTTTGCTTGGTGATAAATTGAATACTTTTGACATGCTTTACTTTCAGAAGTATTTGATTGGTTATCCCATATTTTCTTTTGCCTCTCAAGCATGATGGTTGTTAACCTTATAATCTTTGTCATTAGTATGTAGCAGAAAATGTGTACTTTGTTATGATGTGTAGGTCATATTTGAGAGGTGACTTTGAAATAGTTAAAATAACTTTTGCATGTCATATTGAAAATAATCATTCAAACCAATGTAATGTTTTCACTTTCATACCATCAAAATTGATTTTAAATGATGAAATACATGTTTCAAAGTGATTTTCAATATGACAAAAATGATTTTAAATATTTCAAAATTACTCTTTAATATGTTCAAATATTAAGTTTACTCCATTTGGGTTTTGAGGAGGTCCATAGGTCAGACATAGTGTACTTGGAGTGTAACTGCTTGGTTGGAAAAACTTGGCTGCTCGCTAGTAAGTATGACCTCCTCCTACTTTCTTTTATAGTTCATTTCTGTTAGTCTACTTTTACTAATGTAGTAAGTATTGATTGAGAGTATCAAAGTGGGGGCATCAGTGTGTCATATTCATAACATTGCATTTCACAATTATCCTGTAAGCTGTGGACACCCTTATAATGGTCAAGCCTAAGGTTAATTCTTGAACCAGTTGTACCCATTTATCATCTGTGAAGTAGATAGAATTTTCCTTACATTTTGGAACAACCCCGTTATATATGGACAATATGTTTGTCCTGACCAACAAACCTAAATAGAATTGTTAATAGATTTCCTGGGCATCCCCCCCGGAGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTTTTCCTTGAACGGGATCAAGTGGATGGAATTGGAATTTTATTATTAAGGGTTAGATCACGGTGAATGAATTCTCATCATCTAAGCTCAAGTCAGCTTGATCTAGATCCTCACTCTGTATAGTTTAAACTCATCGATAAAACATATGAGATGTAGAATGCCTTTTGATGACTCCACTTATGAGCTTGGAAGAAGGATGTCTGAGGTAGTGGAACTTGGAAAGTCATATGTTTCAATTGAACCCTTTAGTATTTAGTTTTTATTGAGTTCATCATTGGAACGTGATACCAATTTCCACATGGGGCGGAGGGTAGGCATGATTATCGAATTCGATTTTGTAGTACGTGAGAGTCTAGAATAACTTGTAGATTACCTCCAGTACATAGTTTCTGTCTAAAGTACACTTGGGGCCCCAAGCCATCTCATGATGATCACAGGATACTAGCAGAAGGTTCAAGTACCAATGTAGCTTTCTTAATGTAAATTTTGCTAGATCACTGAATGTAGGGGGGATCATCACATTGCCAGTTAGGAGAGTTGATGCAGTTAGGACTTGAGATGTTTATTAGAGAGCTTATGAAGACAGTTAGACACATAGTGAAGTATCTGATGGTTTTGCCATCTCACTCAAAATCACAACCACAATGTGTGTTGAACCCACAACAGCCCCAACAAATGATTGCACATGCTCTTAGTCATGTGAATTCTTTTTTCTGTGAGTTTATAGAAGCATTGGTACATGGCCTGATTGCATTTGCCATTGAGCAGGAACCATGA

mRNA sequence

ATGAGGCCTACACCGATGGAATTCTTTGCGGAGCTGGAAGAACAAGGATCGACGGTCGCCATGGACGTGGACGATGTGGACCCACTTGAGATATTGGGCGAGGGTGGGGGATCATCACATTGCCAGTTAGGAGAGTTGATGCAGTTAGGACTTGAGATGTTTATTAGAGAGCTTATGAAGACAGTTAGACACATAGTGAAGTATCTGATGGTTTTGCCATCTCACTCAAAATCACAACCACAATGTGTGTTGAACCCACAACAGCCCCAACAAATGATTGCACATGCTCTTAGTCATGTGAATTCTTTTTTCTGTGAGTTTATAGAAGCATTGGTACATGGCCTGATTGCATTTGCCATTGAGCAGGAACCATGA

Coding sequence (CDS)

ATGAGGCCTACACCGATGGAATTCTTTGCGGAGCTGGAAGAACAAGGATCGACGGTCGCCATGGACGTGGACGATGTGGACCCACTTGAGATATTGGGCGAGGGTGGGGGATCATCACATTGCCAGTTAGGAGAGTTGATGCAGTTAGGACTTGAGATGTTTATTAGAGAGCTTATGAAGACAGTTAGACACATAGTGAAGTATCTGATGGTTTTGCCATCTCACTCAAAATCACAACCACAATGTGTGTTGAACCCACAACAGCCCCAACAAATGATTGCACATGCTCTTAGTCATGTGAATTCTTTTTTCTGTGAGTTTATAGAAGCATTGGTACATGGCCTGATTGCATTTGCCATTGAGCAGGAACCATGA

Protein sequence

MRPTPMEFFAELEEQGSTVAMDVDDVDPLEILGEGGGSSHCQLGELMQLGLEMFIRELMKTVRHIVKYLMVLPSHSKSQPQCVLNPQQPQQMIAHALSHVNSFFCEFIEALVHGLIAFAIEQEP
Homology
[Close]
BLAST of Clc06G07970 vs. NCBI nr
Match: XP_038875245.1 (small acidic protein 1 [Benincasa hispida])

HSP 1 Score: 74.7 bits (182), Expect = 6.2e-10
Identity = 37/45 (82.22%), Postives = 40/45 (88.89%), Query Frame = 0 

Query: 1  MRPTPMEFFAELEEQGSTVAMDVDDVDPLEILGEGGGSSHCQLGE 46
          MRPTPMEFFAELEEQGSTVAMDVDDVDPLEILGEG  S+  +L +
Sbjct: 1  MRPTPMEFFAELEEQGSTVAMDVDDVDPLEILGEGVISAENKLAD 45

[Close]
BLAST of Clc06G07970 vs. NCBI nr
Match: KAG6593800.1 (Small acidic protein 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 73.9 bits (180), Expect = 1.1e-09
Identity = 36/45 (80.00%), Postives = 40/45 (88.89%), Query Frame = 0 

Query: 1  MRPTPMEFFAELEEQGSTVAMDVDDVDPLEILGEGGGSSHCQLGE 46
          MRPTPMEFFAE+EEQGSTVAMDVDDVDPLEILGEG  S+  +L +
Sbjct: 42 MRPTPMEFFAEMEEQGSTVAMDVDDVDPLEILGEGVISAENKLAD 86

[Close]
BLAST of Clc06G07970 vs. NCBI nr
Match: XP_023513491.1 (small acidic protein 1 [Cucurbita pepo subsp. pepo] >XP_023513492.1 small acidic protein 1 [Cucurbita pepo subsp. pepo] >XP_023513494.1 small acidic protein 1 [Cucurbita pepo subsp. pepo] >XP_023513495.1 small acidic protein 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 73.9 bits (180), Expect = 1.1e-09
Identity = 36/45 (80.00%), Postives = 40/45 (88.89%), Query Frame = 0 

Query: 1  MRPTPMEFFAELEEQGSTVAMDVDDVDPLEILGEGGGSSHCQLGE 46
          MRPTPMEFFAE+EEQGSTVAMDVDDVDPLEILGEG  S+  +L +
Sbjct: 1  MRPTPMEFFAEMEEQGSTVAMDVDDVDPLEILGEGVISAENKLAD 45

[Close]
BLAST of Clc06G07970 vs. NCBI nr
Match: XP_022964281.1 (small acidic protein 1 [Cucurbita moschata] >XP_022964282.1 small acidic protein 1 [Cucurbita moschata] >XP_022964283.1 small acidic protein 1 [Cucurbita moschata] >XP_022964284.1 small acidic protein 1 [Cucurbita moschata] >XP_023000574.1 small acidic protein 1 [Cucurbita maxima] >XP_023000575.1 small acidic protein 1 [Cucurbita maxima] >XP_023000576.1 small acidic protein 1 [Cucurbita maxima] >XP_023000577.1 small acidic protein 1 [Cucurbita maxima])

HSP 1 Score: 73.9 bits (180), Expect = 1.1e-09
Identity = 36/45 (80.00%), Postives = 40/45 (88.89%), Query Frame = 0 

Query: 1  MRPTPMEFFAELEEQGSTVAMDVDDVDPLEILGEGGGSSHCQLGE 46
          MRPTPMEFFAE+EEQGSTVAMDVDDVDPLEILGEG  S+  +L +
Sbjct: 1  MRPTPMEFFAEMEEQGSTVAMDVDDVDPLEILGEGVISAENKLAD 45

[Close]
BLAST of Clc06G07970 vs. NCBI nr
Match: KAG7026131.1 (Small acidic protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 73.9 bits (180), Expect = 1.1e-09
Identity = 36/45 (80.00%), Postives = 40/45 (88.89%), Query Frame = 0 

Query: 1  MRPTPMEFFAELEEQGSTVAMDVDDVDPLEILGEGGGSSHCQLGE 46
          MRPTPMEFFAE+EEQGSTVAMDVDDVDPLEILGEG  S+  +L +
Sbjct: 53 MRPTPMEFFAEMEEQGSTVAMDVDDVDPLEILGEGVISAENKLAD 97

[Close]
BLAST of Clc06G07970 vs. ExPASy Swiss-Prot
Match: Q9T0H2 (Small acidic protein 1 OS=Arabidopsis thaliana OX=3702 GN=SMAP1 PE=1 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 3.1e-04
Identity = 20/45 (44.44%), Postives = 33/45 (73.33%), Query Frame = 0 

Query: 1  MRPTPMEFFAELEEQGSTVAMDVDDVDPLEILGEGGGSSHCQLGE 46
          MRP  ++  +E+++ GS++AMDVDD++ +EIL EGG  S  +L +
Sbjct: 1  MRPMQLDMLSEMDDAGSSMAMDVDDLEAMEILNEGGLVSDNKLAD 45

[Close]
BLAST of Clc06G07970 vs. ExPASy TrEMBL
Match: A0A6J1KE12 (small acidic protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111494814 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 5.1e-10
Identity = 36/45 (80.00%), Postives = 40/45 (88.89%), Query Frame = 0 

Query: 1  MRPTPMEFFAELEEQGSTVAMDVDDVDPLEILGEGGGSSHCQLGE 46
          MRPTPMEFFAE+EEQGSTVAMDVDDVDPLEILGEG  S+  +L +
Sbjct: 1  MRPTPMEFFAEMEEQGSTVAMDVDDVDPLEILGEGVISAENKLAD 45

[Close]
BLAST of Clc06G07970 vs. ExPASy TrEMBL
Match: A0A6J1HIH2 (small acidic protein 1 OS=Cucurbita moschata OX=3662 GN=LOC111464345 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 5.1e-10
Identity = 36/45 (80.00%), Postives = 40/45 (88.89%), Query Frame = 0 

Query: 1  MRPTPMEFFAELEEQGSTVAMDVDDVDPLEILGEGGGSSHCQLGE 46
          MRPTPMEFFAE+EEQGSTVAMDVDDVDPLEILGEG  S+  +L +
Sbjct: 1  MRPTPMEFFAEMEEQGSTVAMDVDDVDPLEILGEGVISAENKLAD 45

[Close]
BLAST of Clc06G07970 vs. ExPASy TrEMBL
Match: A0A5A7SMJ5 (Small acidic protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G00640 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 7.4e-09
Identity = 35/45 (77.78%), Postives = 39/45 (86.67%), Query Frame = 0 

Query: 1  MRPTPMEFFAELEEQGSTVAMDVDDVDPLEILGEGGGSSHCQLGE 46
          MR +PMEFFAELEEQGSTVAMDVDDVDPLEILGEG  S+  +L +
Sbjct: 1  MRSSPMEFFAELEEQGSTVAMDVDDVDPLEILGEGVISAENKLAD 45

[Close]
BLAST of Clc06G07970 vs. ExPASy TrEMBL
Match: A0A0A0LNK1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G166190 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 7.4e-09
Identity = 35/45 (77.78%), Postives = 39/45 (86.67%), Query Frame = 0 

Query: 1  MRPTPMEFFAELEEQGSTVAMDVDDVDPLEILGEGGGSSHCQLGE 46
          MR +PMEFFAELEEQGSTVAMDVDDVDPLEILGEG  S+  +L +
Sbjct: 1  MRSSPMEFFAELEEQGSTVAMDVDDVDPLEILGEGVISAENKLAD 45

[Close]
BLAST of Clc06G07970 vs. ExPASy TrEMBL
Match: A0A1S3CCM1 (small acidic protein 1 OS=Cucumis melo OX=3656 GN=LOC103499479 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 7.4e-09
Identity = 35/45 (77.78%), Postives = 39/45 (86.67%), Query Frame = 0 

Query: 1  MRPTPMEFFAELEEQGSTVAMDVDDVDPLEILGEGGGSSHCQLGE 46
          MR +PMEFFAELEEQGSTVAMDVDDVDPLEILGEG  S+  +L +
Sbjct: 1  MRSSPMEFFAELEEQGSTVAMDVDDVDPLEILGEGVISAENKLAD 45

[Close]
BLAST of Clc06G07970 vs. TAIR 10
Match: AT4G13520.1 (small acidic protein 1 )

HSP 1 Score: 46.2 bits (108), Expect = 2.2e-05
Identity = 20/45 (44.44%), Postives = 33/45 (73.33%), Query Frame = 0 

Query: 1  MRPTPMEFFAELEEQGSTVAMDVDDVDPLEILGEGGGSSHCQLGE 46
          MRP  ++  +E+++ GS++AMDVDD++ +EIL EGG  S  +L +
Sbjct: 1  MRPMQLDMLSEMDDAGSSMAMDVDDLEAMEILNEGGLVSDNKLAD 45

The following BLAST results are available for this feature:
BLAST of Clc06G07970 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038875245.16.2e-1082.22small acidic protein 1 [Benincasa hispida][more]
KAG6593800.11.1e-0980.00Small acidic protein 2, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_023513491.11.1e-0980.00small acidic protein 1 [Cucurbita pepo subsp. pepo] >XP_023513492.1 small acidic... [more]
XP_022964281.11.1e-0980.00small acidic protein 1 [Cucurbita moschata] >XP_022964282.1 small acidic protein... [more]
KAG7026131.11.1e-0980.00Small acidic protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
BLAST of Clc06G07970 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9T0H23.1e-0444.44Small acidic protein 1 OS=Arabidopsis thaliana OX=3702 GN=SMAP1 PE=1 SV=1[more]
BLAST of Clc06G07970 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1KE125.1e-1080.00small acidic protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111494814 PE=4 SV=1[more]
A0A6J1HIH25.1e-1080.00small acidic protein 1 OS=Cucurbita moschata OX=3662 GN=LOC111464345 PE=4 SV=1[more]
A0A5A7SMJ57.4e-0977.78Small acidic protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold9... [more]
A0A0A0LNK17.4e-0977.78Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G166190 PE=4 SV=1[more]
A0A1S3CCM17.4e-0977.78small acidic protein 1 OS=Cucumis melo OX=3656 GN=LOC103499479 PE=4 SV=1[more]
BLAST of Clc06G07970 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G13520.12.2e-0544.44small acidic protein 1 [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc06G07970.2Clc06G07970.2mRNA