Clc06G07370 (gene) Watermelon (cordophanus) v2

Overview
NameClc06G07370
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
LocationClcChr06: 7933946 .. 7934571 (-)
RNA-Seq ExpressionClc06G07370
SyntenyClc06G07370
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAAAAAAAAGAGGTAATAAAAATGTATGTGAAATGGGTAATGGTGTTTGCAATTGCAGTGGTGCTTCTCACCGCTGAGGCTCACCAGCCAACGCTTACTCAAAATGATCCTTATTATCCTAAGGAAATGGAGTCGTCCGTGGCTGAAAAAAAGAAGTTCGTGGGCCAACGCGGTGATCACAGTACCGATCCTAAGCACGGAAAAGGATGCCATAAAAACGCATATGACAGGTGCAAGCCACCCATGTCCGACTGAATGGCTCTCCCTCTGTGTTTAGATTGGCCACTCTGTTGGGGACAATATATATGCCTTATCTACTAAATAAAACTATTCCAAAAGCCTATGTATCGGCTGCTCCCACCGATATGGTCTCTTAAATATTATTGTAATGTAATAATGCTAGTGTTCTACTTGGTGTCTTTTTCTCTGTAACATTAATGTTTGTATTTGCATCTTCATGTATTTTCACCTTATTTTTGTTTCTAGCAATTTTAGCAGGATTTCCAGCTTAACTCTCAGCTTTTTATTTTCCTTTCGGCTTAAGAATGTGATATGGGTAAAACTAGACTTCAAAAAGATACACTAAAGACTATCAAAATCTATTAGTAATAGATAGACTCTTA

mRNA sequence

AAAAAAAAAAAAGAGGTAATAAAAATGTATGTGAAATGGGTAATGGTGTTTGCAATTGCAGTGGTGCTTCTCACCGCTGAGGCTCACCAGCCAACGCTTACTCAAAATGATCCTTATTATCCTAAGGAAATGGAGTCGTCCGTGGCTGAAAAAAAGAAGTTCGTGGGCCAACGCGGTGATCACAGTACCGATCCTAAGCACGGAAAAGGATGCCATAAAAACGCATATGACAGGTGCAAGCCACCCATGTCCGACTGAATGGCTCTCCCTCTGTGTTTAGATTGGCCACTCTGTTGGGGACAATATATATGCCTTATCTACTAAATAAAACTATTCCAAAAGCCTATGTATCGGCTGCTCCCACCGATATGGTCTCTTAAATATTATTGTAATGTAATAATGCTAGTGTTCTACTTGGTGTCTTTTTCTCTGTAACATTAATGTTTGTATTTGCATCTTCATGTATTTTCACCTTATTTTTGTTTCTAGCAATTTTAGCAGGATTTCCAGCTTAACTCTCAGCTTTTTATTTTCCTTTCGGCTTAAGAATGTGATATGGGTAAAACTAGACTTCAAAAAGATACACTAAAGACTATCAAAATCTATTAGTAATAGATAGACTCTTA

Coding sequence (CDS)

ATGTATGTGAAATGGGTAATGGTGTTTGCAATTGCAGTGGTGCTTCTCACCGCTGAGGCTCACCAGCCAACGCTTACTCAAAATGATCCTTATTATCCTAAGGAAATGGAGTCGTCCGTGGCTGAAAAAAAGAAGTTCGTGGGCCAACGCGGTGATCACAGTACCGATCCTAAGCACGGAAAAGGATGCCATAAAAACGCATATGACAGGTGCAAGCCACCCATGTCCGACTGA

Protein sequence

MYVKWVMVFAIAVVLLTAEAHQPTLTQNDPYYPKEMESSVAEKKKFVGQRGDHSTDPKHGKGCHKNAYDRCKPPMSD
Homology
BLAST of Clc06G07370 vs. NCBI nr
Match: KAA0065660.1 (hypothetical protein E6C27_scaffold90G001190 [Cucumis melo var. makuwa] >TYK01422.1 hypothetical protein E5676_scaffold772G00050 [Cucumis melo var. makuwa])

HSP 1 Score: 69.7 bits (169), Expect = 1.2e-08
Identity = 42/83 (50.60%), Postives = 52/83 (62.65%), Query Frame = 0

Query: 1  MYVKWVMVFAIAVVLLT----AEAHQPTLTQNDPYYP-KEMESSVAEKKKFVGQRGDHST 60
          M ++W MVF IAV+LL+    AE H+P LTQ+DPYYP KE+ES        VG     + 
Sbjct: 1  MSLRWAMVFVIAVMLLSAQSLAEVHRPALTQHDPYYPNKEVES--------VGHHTGDTA 60

Query: 61 DPKHGKGCHKN-AYDRCKPPMSD 78
          +PK GK C K   Y +CKPPMSD
Sbjct: 61 NPKIGKTCRKGLPYSKCKPPMSD 75

BLAST of Clc06G07370 vs. NCBI nr
Match: KGN61603.1 (hypothetical protein Csa_006268 [Cucumis sativus])

HSP 1 Score: 62.4 bits (150), Expect = 2.0e-06
Identity = 38/76 (50.00%), Postives = 43/76 (56.58%), Query Frame = 0

Query: 1  MYVKWVMVFAIAVVLLTA----EAHQPTLTQNDPYYPKEMESSVAEKKKFVGQRGDHSTD 60
          M +KWVMVFAIA+VLLTA    EAH+PTLT NDP           E K  VG  GD +  
Sbjct: 1  MSLKWVMVFAIAMVLLTAETATEAHRPTLTPNDP-----------EMKSMVGHAGDKTIP 60

Query: 61 PKHGKGCHKNAYDRCK 73
             GKGC K  +  CK
Sbjct: 61 AHGGKGCKKGPHSNCK 65

BLAST of Clc06G07370 vs. NCBI nr
Match: KAA0065661.1 (hypothetical protein E6C27_scaffold90G001210 [Cucumis melo var. makuwa] >TYK01420.1 hypothetical protein E5676_scaffold772G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 58.9 bits (141), Expect = 2.2e-05
Identity = 39/77 (50.65%), Postives = 43/77 (55.84%), Query Frame = 0

Query: 1  MYVKWVMVFAIAVVLLTA----EAHQPTLTQNDPYYPKEMESSVAEKKKFVGQRGDHSTD 60
          M +KWVMVFAIA+VLLTA    EAH+P LTQNDP           E K  VG      T 
Sbjct: 1  MSLKWVMVFAIAMVLLTAETSTEAHRPRLTQNDP-----------EMKSLVGGHIGDKTK 60

Query: 61 PKHG-KGCHKNAYDRCK 73
          P HG KGC K  +  CK
Sbjct: 61 PYHGAKGCKKGPHPNCK 66

BLAST of Clc06G07370 vs. ExPASy TrEMBL
Match: A0A5A7VEN6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold772G00050 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 6.0e-09
Identity = 42/83 (50.60%), Postives = 52/83 (62.65%), Query Frame = 0

Query: 1  MYVKWVMVFAIAVVLLT----AEAHQPTLTQNDPYYP-KEMESSVAEKKKFVGQRGDHST 60
          M ++W MVF IAV+LL+    AE H+P LTQ+DPYYP KE+ES        VG     + 
Sbjct: 1  MSLRWAMVFVIAVMLLSAQSLAEVHRPALTQHDPYYPNKEVES--------VGHHTGDTA 60

Query: 61 DPKHGKGCHKN-AYDRCKPPMSD 78
          +PK GK C K   Y +CKPPMSD
Sbjct: 61 NPKIGKTCRKGLPYSKCKPPMSD 75

BLAST of Clc06G07370 vs. ExPASy TrEMBL
Match: A0A0A0LII8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G176170 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 9.6e-07
Identity = 38/76 (50.00%), Postives = 43/76 (56.58%), Query Frame = 0

Query: 1  MYVKWVMVFAIAVVLLTA----EAHQPTLTQNDPYYPKEMESSVAEKKKFVGQRGDHSTD 60
          M +KWVMVFAIA+VLLTA    EAH+PTLT NDP           E K  VG  GD +  
Sbjct: 1  MSLKWVMVFAIAMVLLTAETATEAHRPTLTPNDP-----------EMKSMVGHAGDKTIP 60

Query: 61 PKHGKGCHKNAYDRCK 73
             GKGC K  +  CK
Sbjct: 61 AHGGKGCKKGPHSNCK 65

BLAST of Clc06G07370 vs. ExPASy TrEMBL
Match: A0A5A7VIV6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold772G00020 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.1e-05
Identity = 39/77 (50.65%), Postives = 43/77 (55.84%), Query Frame = 0

Query: 1  MYVKWVMVFAIAVVLLTA----EAHQPTLTQNDPYYPKEMESSVAEKKKFVGQRGDHSTD 60
          M +KWVMVFAIA+VLLTA    EAH+P LTQNDP           E K  VG      T 
Sbjct: 1  MSLKWVMVFAIAMVLLTAETSTEAHRPRLTQNDP-----------EMKSLVGGHIGDKTK 60

Query: 61 PKHG-KGCHKNAYDRCK 73
          P HG KGC K  +  CK
Sbjct: 61 PYHGAKGCKKGPHPNCK 66

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0065660.11.2e-0850.60hypothetical protein E6C27_scaffold90G001190 [Cucumis melo var. makuwa] >TYK0142... [more]
KGN61603.12.0e-0650.00hypothetical protein Csa_006268 [Cucumis sativus][more]
KAA0065661.12.2e-0550.65hypothetical protein E6C27_scaffold90G001210 [Cucumis melo var. makuwa] >TYK0142... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7VEN66.0e-0950.60Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LII89.6e-0750.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G176170 PE=4 SV=1[more]
A0A5A7VIV61.1e-0550.65Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 25..77
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 36..71

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc06G07370.1Clc06G07370.1mRNA