Clc06G07230 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc06G07230
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Unknown protein
Location	ClcChr06: 7635800 .. 7640764 (-)
RNA-Seq Expression	Clc06G07230
Synteny	Clc06G07230

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTCTTCCTCATCCTTCTTTTATCTTCTTCCCCCAAATCCCCTTACTCTTCCCTTATGGCGGCCTCACACACACGAATCTCCCAAAGGCATCGAAAATTGGAAGCCCGATTCCAGAGAAGCTTCTTCCACCTCTTCTCACCACCATCATCATAAAGAATCGGAGCCGGAGAAGCCGCAGGTTTCTAAGAAATGGCAGCATCCGGCGGCTCCTTTTCATTACGATTGCGTTTAGATTTGCAGCTTGTTTACAAAACAAGGCTTTAAGGTTACAATAAAAATGAAGAAGTTTGGTTGTTTTGAGAGAAAGATGGGGTGTGTAAGGGGGATTTGGAAAATAGAGAAAAGAGAAAAAGAAAGATAAGGAAGACCCACATCGGAAAGGGGGAAGGAGAAAGAGAGAGGGAGTTAGTATAAAAGAGTGCTGAAAGGAACTTAGAAAATTAAAAGGGTCGGTTGGCTAAATATGCCACGCTCGCCCAACATTGTGGTGAGTGCTGTATGGCAATCTAGACATATGGCCGACATAATTTCTGGAAACTAAAATAGGGTTGGCCCAATTGGCCGACCCTCCTACTCTCACTTTTCAACTTTTTTTTCATTTCTATTCCAACTTTTTTTTTTTTTAAATCTAATTTATAAAAAAAATTATTTTTATTAAAAACTAAAATTCTAATGACACAATATAATTTTGAAAAATCATTAATTAATTAGATAATTAAAAAACATTGGAATAATACTGCTTTTTATAAAGTAGATATGAACAAGAAAAAGATTTAAAATTTCAAAATTCAAAATATAGCATATATTTAGTTTCTAGCTTAAATGTGATAAGGGTCGCAAAATGTAGGATAAAATTGTTTTTTGAATTTAAATCTGAAAAGAGAAAATACAGTTATGGTGTATGTGGACATAATCTTGAGGGCATTTTGGGAATATTGAATGATGAAAACATTTTTAGGGGACGGTATCTTAATTTAAAATAAGGCATATAAATTTAAAGTATCTCAAATATGATAAAATAAAATTAAGGTAATTTGAATTTCAAAAAATAAAAAATAAGCAAAATTCAGACCCAGTTGTTGAAATATAGTTAGTTGCTATTTTTTCTAATAAAGTTTCATTTTTGCTATTATTTGAGATGAAACCTTAAATCTTACTAATTGGTATGGTAAAAATGGGTAAAAAAAAATATAGTCTTAAATTGTAGTCCACTTTAGAATTCAATACAACGCCCAATAATTGTGTCTCATCACCATCACGTGGTAGCTTTTAATGTTAATTTTGATGAAGTGAGCTTAAAAGATGGTTCAAACTTCAAAAACCATGGCCTAATCGGATAAGCAATAAAATTGGTAATCTCAATTATCTTTATATATATTGTTTCATTAACGAATTAAAAAGTCACGTAAATGTATGTTGCTAAACAAATAAAAACTCAGCCCACTCTTTTCGAAAATTCATTTCCTTTTAGTGCTAATTACATTGAGAAACCAATAATTTTATGACATCTTAAAAAAAAAAAATTAAGTTAAATTTATTCATTAAATTTTAAGTCTATGTTGAATTTTTAAAAAATGCCTAATAAAATTTTAATTTCTTTGTTTATGTACCATAAGTCCTAAATTTAAAATGGATGTAGTTAGTAATTAAACTTTTCAATTTTGTGTCTAATAGATTCTTGATCTATTTAACATTTTTTTTAAAGGTACACACCTACTAGATGCAAAATTGAAAATTTGAGGTTTCATTAGACATAAAATTAACTTCTACACTTAATTAATCAACTAATTTAAAAGACATAAAATTAACTTCTACACTTAATTAATCAACTAATTTAAAAACCAAAAAGAGCATAGCTCAACTAGCAACCACAAAGTTTGTAGTTCAAATCGTCCGAAATCTAAGTTAAGTTTGTATTTGACATTATTTAATTATTTATGGTTTTTATGATTATGACTCTAGGGTTTAGAGAAGTGTTCTATATAAATTCTTTAAACCTAAAGGCACCAATTGGTTTTGTAATTTGTAGCCTTCTCTCTAATAAAATTAATATCTCTTTGTCTCATAGACATATTTAACACACTGTTAGTAACCCACATAGATCTGCGTGTTGATTCTCTATTCTTTTACGTTTTCTATATTCCTTAATTGTCTATTTTGTAGTAATAATAGTGTTAAAAAAAAAAATTCTAAGAAATGTATATTTTAAACAAACTTACTCATAATTTGAAAGTTCAAATTAGTCTATTTTAAATTAAAAGGTAAATTTGATAAAATTTGAATTTCATCGATTTGAATTTGAATCAATTTTCATACTCTATTCTAACAATTACTTTTATTAAATTTGGACATACCTCCACCTATATCCTAAATATGTTAAAGAAATGTAAAAACCAAATTTAAATTATCTAGAGTTGATCTCGAATTAATAGCATTTGTTGCATTCATTAATTCCATATCAAATTTGAGTGGAAGTAAAAATTAAAAGATATAGCAAATAATGCAATATATATATATATTAAAAATATTTCACACGTACTTCATAACTCTAAATTAAACAATTTTACATTCCAAACAAACATAGACTTTTTAAATACTCTCCAAACTTCATAAATTTAATGTCCCAAATGTTTCCTTAAAAATTAGGGACCATATAGAATATTTTACTTTAATTTCATTTTCTTCTCAAATTTATTCTTGAAATGTGACATTGCGATCAAATAAACATCCACCATTCACGTTTAATCTTATCTCTACTTTTTCAAAGGTTCACCTTTGACCACGTACTTTAAAATTTAACGTCATACCGCCGCAACGTTGTTACGGACCAATCAACTTGATGCCACATCGGATTCCTACTTGTCACTGTCATACTCTCATGCAACCCTTGTCTGCCACGTGTACAATCTGTCTCCTATGGCATCAAATCTCATGGCAATTATTATTTGAGATAAATTAGTGGAGCTGGATTAACTCTAATTTAGAAAAGGAAAAAGAACAGGAGAATATTGAGTAAATTTTTTTCTTAAAAAAATAATAATAATAATAATAAAAAAAATTAAAAACAGGGGGAGGTTTGAATTTTAGAATGGGGGTTTGGAATTTTCATTAACCTTTTCAACCATAAAATAAAATTGGTCAAAAGCAAAGATTGGAATCCCCTTGTATTTTATATTTGCACCACATTTTATTCCTTTTAAATCAAATACCAACCATACCAAAACAATAACATCAAGTTAAGAATATCTACATGTTTCTAGATTTTTCCACTCTCATCAACACATCCACATGGGATTTTTATTTCAAATTTTTCATTCTCTCAAGGATTTTTTTTTCTTTCTAGAAGAGTTCAATTTTTAAAATTAAGTTGGATTTTAAATTCAATATTATGTGGGTGGTAAGATTTTCAATTTAAAAATTAGACATTTTAAAATTTTGAATCCAAAATTGTTACACACTTTTTATTGTTTGTTGAGGAACTTATTAGACACACAATTAAAACTTTAATGACACATTAGACATTTTTTAAACTTTAATGACCCATCAAACCTACAATTTTTGGAAATAAATTTATATAATTTTGCTATATCTTCTCTCTAAACTCAATAAATAAAGCCAAAATTACAAGTTTAGTCTTTAAACTCTTAAGTTCGTGGCAATTTGTATATTTAGTCAATGAACCTTAAACTTAGACGCTAAATTACAAGTTTTGTCAAAATTATATTCAATATATCAATTATTCTTTAAAAAACTTAAATATAATAAGAATTTATTAGACACAAAATTAAGAGCTTAGCGGCCTAGTTACTTTTTTATATTCTAAGAGCCTTACACAAACTTCAAAGTTAAAAGACCATATCGGTAATTTAACAAAAAAATAAAATAAAAATAAGGTGTTTAATTTTGGTTTTTTGGTTTTGTGGTTGGTCTTACTAGTTGGAATAATATTTGGGTACATCTTAGGATTAGGGGTGTGCAAGGTTCGGTTCGGTCCGGTTTTGGGCCGAACCATGAACCAAACTGAAGTTATTGGTTCACAATGAAGAAGAACCGCTGAAAATCGGTTACACTGGTTCGTTCAAGTGGTTCAGTTAAACACGAGTGCGAGAGCGAGAGAGAGAGTCTTGCTCTTGCTTCCTTTCCTCACTCACAATTACTCTTCTCTCTCTCACACAATCACTCTTATCTCTCAGACTGGTTGAGTTCGATTTTGTATAATTTTTTAGGATAATAAACCAATAACCAAATTGAATGGTTCAGTTTTGGTTTTCCGTGAATCGGTAGTTCTCCATTTTTCAAAAAAATAGACCCATTCATTATTCGTTAAATATTAAGTAGGACGACAAGTAGTATTGGAAGCTCCATTCATTATTTGTTAAAAAGAAATGATATGAGATCTATAAATTAAAATAATATATGATTAAGTGACGTGTAAAATGGTAAATGTTGGTAAATATATTATGGGGGCGTGTGACAACTATGGGCCAGTTATTGGAGGCCCCAACTAGAGGTGAGCACTAAAAATAGTGCTTCCCACATGCCTCCTTTTGTCCCCTATAATTACCCCTTTCCCTCTTCCTCATCCTTCTTATCTTCTTCCCTCAAATCCCCTTTCTCTTCCCTTATGGCCGACTCACACAGACGAACCTCCGCCCCCGTAAGCCGCCATCCTCAGCAGCCAAGCCGCCTTCAACGCCGCGCTCCGGCGTCCCTGCAAATCAATCGCTCCGATTGGAAGGTCGCCATCCCTCTCTTGTCCCCCCTCGTCTCTCCTTCCTCTCCCAAAGACATCCAAAATTGGAAGCCCGATTCCAGAGAAGCTTCTTCCACCTCTTCTCACCACCATCATCATAAAGAATCGGAGCCAGAGAAGCCGCCGGTTTTTAAGAAATGGCAGCATCCGGCAGCTCCTTTTCATTACGATTCCGGTCCTAGGGCTCCCAGATTCGTACCCGTTTAG

mRNA sequence

ATGGCCTCTTCCTCATCCTTCTTTTATCTTCTTCCCCCAAATCCCCTTACTCTTCCCTTATGGCGGCCTCACACACACGAATCTCCCAAAGGCATCGAAAATTGGAAGCCCGATTCCAGAGAAGCTTCTTCCACCTCTTCTCACCACCATCATCATAAAGAATCGGAGCCGGAGAAGCCGCAGGTTTCTAAGAAATGGCAGCATCCGGCGGCTCCTTTTCATTACGATTGCCAGCCAAGCCGCCTTCAACGCCGCGCTCCGGCGTCCCTGCAAATCAATCGCTCCGATTGGAAGGTCGCCATCCCTCTCTTGTCCCCCCTCGTCTCTCCTTCCTCTCCCAAAGACATCCAAAATTGGAAGCCCGATTCCAGAGAAGCTTCTTCCACCTCTTCTCACCACCATCATCATAAAGAATCGGAGCCAGAGAAGCCGCCGGTTTTTAAGAAATGGCAGCATCCGGCAGCTCCTTTTCATTACGATTCCGGTCCTAGGGCTCCCAGATTCGTACCCGTTTAG

Coding sequence (CDS)

ATGGCCTCTTCCTCATCCTTCTTTTATCTTCTTCCCCCAAATCCCCTTACTCTTCCCTTATGGCGGCCTCACACACACGAATCTCCCAAAGGCATCGAAAATTGGAAGCCCGATTCCAGAGAAGCTTCTTCCACCTCTTCTCACCACCATCATCATAAAGAATCGGAGCCGGAGAAGCCGCAGGTTTCTAAGAAATGGCAGCATCCGGCGGCTCCTTTTCATTACGATTGCCAGCCAAGCCGCCTTCAACGCCGCGCTCCGGCGTCCCTGCAAATCAATCGCTCCGATTGGAAGGTCGCCATCCCTCTCTTGTCCCCCCTCGTCTCTCCTTCCTCTCCCAAAGACATCCAAAATTGGAAGCCCGATTCCAGAGAAGCTTCTTCCACCTCTTCTCACCACCATCATCATAAAGAATCGGAGCCAGAGAAGCCGCCGGTTTTTAAGAAATGGCAGCATCCGGCAGCTCCTTTTCATTACGATTCCGGTCCTAGGGCTCCCAGATTCGTACCCGTTTAG

Protein sequence

MASSSSFFYLLPPNPLTLPLWRPHTHESPKGIENWKPDSREASSTSSHHHHHKESEPEKPQVSKKWQHPAAPFHYDCQPSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSPKDIQNWKPDSREASSTSSHHHHHKESEPEKPPVFKKWQHPAAPFHYDSGPRAPRFVPV

Homology

[Close]

BLAST of Clc06G07230 vs. NCBI nr
Match: XP_038875425.1 (uncharacterized protein At4g14450, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 189.1 bits (479), Expect = 3.1e-44
Identity = 91/94 (96.81%), Postives = 92/94 (97.87%), Query Frame = 0


Query: 78  QPSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSPKDIQNWKPDSREASSTSSHHHHHK 137
           QPSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSPKDIQNW PDSREASS+SS HHHHK
Sbjct: 18  QPSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSPKDIQNWTPDSREASSSSSQHHHHK 77

Query: 138 ESEPEKPPVFKKWQHPAAPFHYDSGPRAPRFVPV 172
           ESEPEKPPVFKKWQHPAAPFHYDSGPRAPRFVPV
Sbjct: 78  ESEPEKPPVFKKWQHPAAPFHYDSGPRAPRFVPV 111

[Close]

BLAST of Clc06G07230 vs. NCBI nr
Match: XP_008460625.2 (PREDICTED: uncharacterized protein At4g14450, chloroplastic-like [Cucumis melo])

HSP 1 Score: 169.5 bits (428), Expect = 2.6e-38
Identity = 89/110 (80.91%), Postives = 90/110 (81.82%), Query Frame = 0


Query: 78  QPSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSPKDIQNWKPDSREA------SSTSS 137
           QPSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSPKDIQNW PDSREA      SS+SS
Sbjct: 18  QPSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSPKDIQNWTPDSREASSASSSSSSSS 77

Query: 138 HHH----------HHKESEPEKPPVFKKWQHPAAPFHYDSGPRAPRFVPV 172
           HHH          HHKE E EK PVFKKWQHPAAPFHYDSGPRAPRFVPV
Sbjct: 78  HHHHHHHQHHQHQHHKEPEAEKAPVFKKWQHPAAPFHYDSGPRAPRFVPV 127

[Close]

BLAST of Clc06G07230 vs. NCBI nr
Match: XP_022930471.1 (uncharacterized protein At4g14450, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 164.1 bits (414), Expect = 1.1e-36
Identity = 84/97 (86.60%), Postives = 87/97 (89.69%), Query Frame = 0


Query: 78  QPSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSPKDIQNWKPDSREASSTSS--HHHH 137
           QPSRLQRRAPASLQI+RSDWKVAIPLLSPLVSPSSP +IQNW  DS   SS+SS  HHHH
Sbjct: 17  QPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNWTADSGSISSSSSHHHHHH 76

Query: 138 HKESEPEKPPVFKKWQHPAAPFHYDSGPRAPR-FVPV 172
           HKESEPEKPPVFKKWQHPAAPFHYDSG RAPR FVPV
Sbjct: 77  HKESEPEKPPVFKKWQHPAAPFHYDSGSRAPRAFVPV 113

[Close]

BLAST of Clc06G07230 vs. NCBI nr
Match: XP_023000559.1 (uncharacterized protein At4g14450, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 163.3 bits (412), Expect = 1.8e-36
Identity = 84/99 (84.85%), Postives = 87/99 (87.88%), Query Frame = 0


Query: 78  QPSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSPKDIQNWKPDSREASSTSS----HH 137
           QPSRLQRRAPASLQI+RSDWKVAIPLLSPLVSPSSP +IQNW  DS   SS+SS    HH
Sbjct: 17  QPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNWTADSGSISSSSSHHHHHH 76

Query: 138 HHHKESEPEKPPVFKKWQHPAAPFHYDSGPRAPR-FVPV 172
           HHHKESEPEKPPVFKKWQHPAAPFHYDSG RAPR FVPV
Sbjct: 77  HHHKESEPEKPPVFKKWQHPAAPFHYDSGSRAPRAFVPV 115

[Close]

BLAST of Clc06G07230 vs. NCBI nr
Match: KAG6593848.1 (putative protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026180.1 putative protein, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 162.9 bits (411), Expect = 2.4e-36
Identity = 84/100 (84.00%), Postives = 87/100 (87.00%), Query Frame = 0


Query: 78  QPSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSPKDIQNWKPDSREASSTSS-----H 137
           QPSRLQRRAPASLQI+RSDWKVAIPLLSPLVSPSSP +IQNW  DS   SS+SS     H
Sbjct: 17  QPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNWTADSGSISSSSSHHHHHH 76

Query: 138 HHHHKESEPEKPPVFKKWQHPAAPFHYDSGPRAPR-FVPV 172
           HHHHKESEPEKPPVFKKWQHPAAPFHYDSG RAPR FVPV
Sbjct: 77  HHHHKESEPEKPPVFKKWQHPAAPFHYDSGSRAPRAFVPV 116

[Close]

BLAST of Clc06G07230 vs. ExPASy Swiss-Prot
Match: Q6NN02 (Uncharacterized protein At4g14450, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g14450 PE=2 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.3e-08
Identity = 40/96 (41.67%), Postives = 53/96 (55.21%), Query Frame = 0


Query: 78  QPSRLQRRAPASL--QINRSDWKVAIPLLSPLVSPSSPKDIQNWKPDSREASSTSSHHHH 137
           Q S+LQRRAP+ +    + S+W VAIPLLSPL    +    Q+  P  +  +        
Sbjct: 36  QLSQLQRRAPSLMIKPTSFSNWNVAIPLLSPLAPSLTSSFDQSHVPPPQNKTEIP----- 95

Query: 138 HKESEPEKPPVFKKWQHPAAPFHYDSGPRAPRFVPV 172
             E E +K PVFKKWQHPA+PF Y+     P F+ V
Sbjct: 96  -VEEEVKKTPVFKKWQHPASPFCYEPTTFVPPFIQV 125

[Close]

BLAST of Clc06G07230 vs. ExPASy TrEMBL
Match: A0A1S3CDB1 (uncharacterized protein At4g14450, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103499403 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 1.2e-38
Identity = 89/110 (80.91%), Postives = 90/110 (81.82%), Query Frame = 0


Query: 78  QPSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSPKDIQNWKPDSREA------SSTSS 137
           QPSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSPKDIQNW PDSREA      SS+SS
Sbjct: 18  QPSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSPKDIQNWTPDSREASSASSSSSSSS 77

Query: 138 HHH----------HHKESEPEKPPVFKKWQHPAAPFHYDSGPRAPRFVPV 172
           HHH          HHKE E EK PVFKKWQHPAAPFHYDSGPRAPRFVPV
Sbjct: 78  HHHHHHHQHHQHQHHKEPEAEKAPVFKKWQHPAAPFHYDSGPRAPRFVPV 127

[Close]

BLAST of Clc06G07230 vs. ExPASy TrEMBL
Match: A0A6J1ER11 (uncharacterized protein At4g14450, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111436912 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 5.2e-37
Identity = 84/97 (86.60%), Postives = 87/97 (89.69%), Query Frame = 0


Query: 78  QPSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSPKDIQNWKPDSREASSTSS--HHHH 137
           QPSRLQRRAPASLQI+RSDWKVAIPLLSPLVSPSSP +IQNW  DS   SS+SS  HHHH
Sbjct: 17  QPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNWTADSGSISSSSSHHHHHH 76

Query: 138 HKESEPEKPPVFKKWQHPAAPFHYDSGPRAPR-FVPV 172
           HKESEPEKPPVFKKWQHPAAPFHYDSG RAPR FVPV
Sbjct: 77  HKESEPEKPPVFKKWQHPAAPFHYDSGSRAPRAFVPV 113

[Close]

BLAST of Clc06G07230 vs. ExPASy TrEMBL
Match: A0A6J1KKB8 (uncharacterized protein At4g14450, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111494801 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 8.9e-37
Identity = 84/99 (84.85%), Postives = 87/99 (87.88%), Query Frame = 0


Query: 78  QPSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSPKDIQNWKPDSREASSTSS----HH 137
           QPSRLQRRAPASLQI+RSDWKVAIPLLSPLVSPSSP +IQNW  DS   SS+SS    HH
Sbjct: 17  QPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNWTADSGSISSSSSHHHHHH 76

Query: 138 HHHKESEPEKPPVFKKWQHPAAPFHYDSGPRAPR-FVPV 172
           HHHKESEPEKPPVFKKWQHPAAPFHYDSG RAPR FVPV
Sbjct: 77  HHHKESEPEKPPVFKKWQHPAAPFHYDSGSRAPRAFVPV 115

[Close]

BLAST of Clc06G07230 vs. ExPASy TrEMBL
Match: A0A0A0LLJ8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G190740 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 1.3e-35
Identity = 84/105 (80.00%), Postives = 88/105 (83.81%), Query Frame = 0


Query: 79  PSRLQRRAPASLQINRSDWKVAIPLLSPLVSP-SSPKDIQNWK-PDSREASSTSS----- 138
           PSRLQRRAPASLQINRSDWKVAIPLLSPLVSP SSPKDI +W  PDSR+ SST+S     
Sbjct: 14  PSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSSPKDIHSWSTPDSRQPSSTTSSSSHH 73

Query: 139 -----HHHHHKESEPEKPPVFKKWQHPAAPFHYDSGPRAPRFVPV 172
                HHHHHKES+PEK PVFKKWQHPAAPFHYDSG RAPRFVPV
Sbjct: 74  HHLLHHHHHHKESDPEKAPVFKKWQHPAAPFHYDSGARAPRFVPV 118

[Close]

BLAST of Clc06G07230 vs. ExPASy TrEMBL
Match: A0A6J1H320 (uncharacterized protein At4g14450, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111459957 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 1.2e-30
Identity = 71/93 (76.34%), Postives = 77/93 (82.80%), Query Frame = 0


Query: 78  QPSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSPKDIQNWKPDSREASSTSSHHHHHK 137
           QP   + RAPASLQINR DWKVAIPLL+PLVSPSSPK+IQ W P+S E SS SS   +HK
Sbjct: 60  QPGCFRSRAPASLQINRPDWKVAIPLLTPLVSPSSPKEIQTWAPNSGEGSSNSS---NHK 119

Query: 138 ESEPEKPPVFKKWQHPAAPFHYDSGPRAPRFVP 171
           ESEPEKPPVFKKWQHPAAPF YDSGP  PRF+P
Sbjct: 120 ESEPEKPPVFKKWQHPAAPFQYDSGPMDPRFIP 149

[Close]

BLAST of Clc06G07230 vs. TAIR 10
Match: AT1G04330.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G23170.1); Has 74 Blast hits to 74 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 71.2 bits (173), Expect = 8.8e-13
Identity = 45/86 (52.33%), Postives = 50/86 (58.14%), Query Frame = 0


Query: 80  SRLQRRAPASLQIN--RSDWKVAIPLLSPLVSPSSPKDIQNWKPDSREASSTSSHHHHHK 139
           SRLQRRAP  L+IN   ++WKVAIPLLSP  SP          P    A          K
Sbjct: 17  SRLQRRAPPPLKINPCEANWKVAIPLLSPTESP----------PQKPPAVMKREEQRWGK 76

Query: 140 ESEPEKPPVFKKWQHPAAPFHYDSGP 164
           E+  EKPPVFKKWQHPAAPF+Y   P
Sbjct: 77  EA--EKPPVFKKWQHPAAPFYYQPAP 90

[Close]

BLAST of Clc06G07230 vs. TAIR 10
Match: AT3G23170.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14450.1); Has 74 Blast hits to 74 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 67.0 bits (162), Expect = 1.7e-11
Identity = 48/100 (48.00%), Postives = 58/100 (58.00%), Query Frame = 0


Query: 78  QPSRLQRRAPASLQI----NRSDWKVAIPLLSPL-VSP-SSPKDIQNWKPDSREASSTSS 137
           QPSRL +R PA   +      ++W  AIPLLSPL +SP SSP D    +P   +  ST+ 
Sbjct: 20  QPSRLLKRPPALKIVPATPAANNWNTAIPLLSPLALSPESSPVD----QPPVEKNQSTA- 79

Query: 138 HHHHHKESEPEKPPVFKKWQHPAAPFHYDSGPRAPRFVPV 172
                     EK PVFKKWQHPAAPF+Y+S    P FVPV
Sbjct: 80  -------VAVEKTPVFKKWQHPAAPFYYESSTFVPPFVPV 107

[Close]

BLAST of Clc06G07230 vs. TAIR 10
Match: AT4G14450.1 (unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G23170.1); Has 74 Blast hits to 74 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 61.2 bits (147), Expect = 9.1e-10
Identity = 40/96 (41.67%), Postives = 53/96 (55.21%), Query Frame = 0


Query: 78  QPSRLQRRAPASL--QINRSDWKVAIPLLSPLVSPSSPKDIQNWKPDSREASSTSSHHHH 137
           Q S+LQRRAP+ +    + S+W VAIPLLSPL    +    Q+  P  +  +        
Sbjct: 36  QLSQLQRRAPSLMIKPTSFSNWNVAIPLLSPLAPSLTSSFDQSHVPPPQNKTEIP----- 95

Query: 138 HKESEPEKPPVFKKWQHPAAPFHYDSGPRAPRFVPV 172
             E E +K PVFKKWQHPA+PF Y+     P F+ V
Sbjct: 96  -VEEEVKKTPVFKKWQHPASPFCYEPTTFVPPFIQV 125

The following BLAST results are available for this feature:

BLAST of Clc06G07230 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038875425.1	3.1e-44	96.81	uncharacterized protein At4g14450, chloroplastic-like [Benincasa hispida]	[more]
XP_008460625.2	2.6e-38	80.91	PREDICTED: uncharacterized protein At4g14450, chloroplastic-like [Cucumis melo]	[more]
XP_022930471.1	1.1e-36	86.60	uncharacterized protein At4g14450, chloroplastic-like [Cucurbita moschata]	[more]
XP_023000559.1	1.8e-36	84.85	uncharacterized protein At4g14450, chloroplastic-like [Cucurbita maxima]	[more]
KAG6593848.1	2.4e-36	84.00	putative protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]...	[more]

BLAST of Clc06G07230 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6NN02	1.3e-08	41.67	Uncharacterized protein At4g14450, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]

BLAST of Clc06G07230 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CDB1	1.2e-38	80.91	uncharacterized protein At4g14450, chloroplastic-like OS=Cucumis melo OX=3656 GN...	[more]
A0A6J1ER11	5.2e-37	86.60	uncharacterized protein At4g14450, chloroplastic-like OS=Cucurbita moschata OX=3...	[more]
A0A6J1KKB8	8.9e-37	84.85	uncharacterized protein At4g14450, chloroplastic-like OS=Cucurbita maxima OX=366...	[more]
A0A0A0LLJ8	1.3e-35	80.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G190740 PE=4 SV=1	[more]
A0A6J1H320	1.2e-30	76.34	uncharacterized protein At4g14450, chloroplastic-like OS=Cucurbita moschata OX=3...	[more]

BLAST of Clc06G07230 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G04330.1	8.8e-13	52.33	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G23170.1	1.7e-11	48.00	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G14450.1	9.1e-10	41.67	unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein matc...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 26..63
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 104..171
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 20..87
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 118..147
None	No IPR available	PANTHER	PTHR33912:SF2	PUTATIVE-RELATED	coord: 78..170
None	No IPR available	PANTHER	PTHR33912:SF2	PUTATIVE-RELATED	coord: 19..78
IPR040381	Uncharacterized protein At4g14450-like	PANTHER	PTHR33912	OS01G0939400 PROTEIN	coord: 19..78 coord: 78..170

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc06G07230.2	Clc06G07230.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus