Clc06G06930 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc06G06930
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Unknown protein
Location	ClcChr06: 7240756 .. 7244675 (-)
RNA-Seq Expression	Clc06G06930
Synteny	Clc06G06930

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCCTGTCGGCTGTCAGTGGATTGATGACGTGGCTTACTACTCGCATGATTTAAGCAATTTGGCGGCGGTGGAGATGCCACGTGGAAATACAGTTCACCTATCTCGGAAATGTGGGGTCCAAAAGATGTGAAGCCTAAACCTAATTGATTTAGAAGTTGACTACACATGTTATTATTGTATTATTTCATGCCAAATTTTGGTTCGGTGTACCTTAAAAAAAAAAAAAAAAAAAAAAAAAGTGTTCGGTTGGGAAAAAAAATTAAGAATATTTTCTTATTTTATTTTAGGTTAAAATGATTTTGTTCCTATCTCTTCAAGCTTTTTTCTCTTCGCTTCCTCTTATTCTTTTACTTTTATCTCTCCTCCCAATAGAAACAAAATACAACTAGTCCTCAAATTTATTATCATTGCTATTAATTAGTTTTTAAAAATTAGTAAATAATATTTTAGTCCTTATTTGTTACTTTACAATTAACATATGGAATGGATTAAACTTTAAATATGTATATCAATGGTGTTTGTATCATTGTATATTAAAACCACATGAGTTAATTGAGGTAGACATTTTAGATAGGAAAAATACCAGGTGTCTAGGATCCTTTTTTATTTCTTTTCCCTTTCTCTAAAGATTAAGCTATATATTAAGACAAAGAATATTAGGTATAAGCCTATTTATAATATTAGAATATACCAATTTCGTTAGCTAATAATTTGATTGAATAATTTAAATTAATCTCCTTGCATTTGGTGATAGGAAATGACCAACTAATAATCTCTTATCATTCTTTTCTAAAGAACTGAGAATCTTTAATCATCCAAAATGGTTTTTGAAATTTATTAATATAGATTTATATTAAATTTTGGTAATGTATTTTAAGGTCTTGCCAAAAGAAAATTATAATAATTTCCTAACCTTTAAAAGTATGGATTGTGTAATAAATCCATGAATTTTGTGTCTAATATTTTCTTTACTCCCTAGTCAATTTCTTAAATTTAAGATAATTTTTCGAAAAGCTATATATTTATGTGTAGATTTCTAATAAATTAAGTAATCATAAAAAATATTTAATTATAATTAATAGCTGAAAATTTAGGAATAAGTAAATATTTTGTATTCAAAATAGTTGACAAATGAAGTTCACCTCAAACTAAGTCCTACAAATACCTTCTACTCAGAATAACTAAACTTTTTATTAGACTAAATAACTCAAAGTATCAAGTCATGCAAATACAAATGCTCAACTAAAAATAGCTAAAAAACTACAAACCATGAAGTATATTTGGAAAATCAAGAAACTACGAACCTAACGCTCTAATACTACTTGTTGGAAGAAACCTTCTACTTCTATCGTATGAATAAGCAGAAAAATAATAGAGAGTTTAAAAGAAAGCGGTAAAAATTAGATACACAAGAATTAATGTGGAAAAACTCCAAATTGGAGAAAAAACCACAAACCAGAAAAAAAATACACTATGTAAAAAGTTGTTACAATCACACGGAGTAATTCTCTCCCTCGATCCCAATTATAATAGCACTCTCTCAAAACTTTTGACTACTCACACATTTTTTCCACTATCAAACTAGAGAATACAAAAGGAATTTAATTAGAGTTAGCACACTAAGCTTAAAGTGTTTCTAATTAGGACAATTGAAAAACAAAGGCATAAACTACTTTTATAATGTTTAGAGTTCATGTCTTTCCTAAATCTTTTTTATGTAGAACAAACTCATAACCTTCGAAACCTTTTCAATATAGGACAAGTCCATAACTTTCTTAAATTAATCTTTGTCTACACTTCTAATATTTTTGAAAAAAATCCAACAAAGTAAAGAAGGTGAGGGTCGTCTTAAAAAGAAAAACTAAGTAGGTGTATGTACGTGTAGCCGTCCATCATCTCCTCACCAAGAGGCTTTAGAGAAAAGTGGATTTTTTTTTCACCTAAACTATATATATATTTGGTTCAGTCCAAAACAATTGATTGGATAAAAAAGTTAATTTTTTATTTTATTTTATTCAATCTTGGTAGTTGATCTCGGCCCAAATTGATTGAGAAAAACTATTTCAATGAATTTTTCAAAAGGGTGCTAGTTGTGAAAGATGGAAACATTTGAGACCTACTTCTGACCATTTTCGAAATGTTATAGAGTAATTGCAAATTTGAGTATATAAGTTAAAGACTATGCTATGACTCAACTAATATAGGGAATATGTACTATGATGGTTAATTTAGGTTAAAGATTGACAAAAATTGCAATAGTTGTCAGTCTTGCAAATATAGGGTTTTTTTTTTCTTTTGGGATCAAGCCTTTATTCTCAAGGTTGATAGTTCAAGTTTATGCAAATATAAGTTAAATGCTATGATTCAATTAATGTCAGAGATATATGATATATGATTTACTTAAGGTTGAAGATGGAAGACAATTTGACTATTTTTTTCATCTAATAATCAGTCCATTCATTTGTTTATATAATTAAAAATTATTTTGACTATCAAAGCGAGGATAGCTCAATTGACATACACGATCGAGCTGTTCGTGGTTCGAATTCCGTTATTGTACATTTGGAGTATTTTTCAAAATCATTTGGAGTATTTTTCAAAATAGCCATTTACCAAGGAGCTGGAGGACGAAAACAAGTGGGCTTAGCCCAAGTCCATCGCTCATCTCCCTTCGGCCCAACCATTTTGCTCTACTACTTTTTTTTTGCTTCGTACTGGCTCCTCCTCTCTTTCAGCAGCTCAGTCTCGCCGTCGCCGCCGCCGTCTTTCTTCCGCTCCTGCTTCCGCAGCCTCCCTCCTACCGGGTTCGCACCGACTTTCAAGTCTCTTGTTGTTACTTGTTACTGGTATTCCATTGCAATCTATCTCTTCGGCAATTGTTCGTTGTTTTCGTTTTGAATCGTATTCTTAATTTCGATCTCCTTTTGCGATAGAATGGGGATTTGTATCTGATGTGAAGGGAAAGCCATTTGGCTCTCATCTATTCGGCTTTTCTTTCTGCTTCCTTTTGGTTACACCACCGCTAATCTATTTCTTTTTGCTTCTTCCCTTTTGCAAGGACATTCTAGGGTTCACTATTTCTGCAGACAATGTCTTCGGTTGGAACATCCAAGGGAATTCTGGAGATTGCCAAGTTTGGGATTTATGTTACTATACCTATCGTTTTAATGTACACCTTCGCCAATAATAGCAAAAACCTACAGAGATTCATGGGCAAAGTAACTCTCTATCTCCCTTTCTTTACACAATTATGTATGTGGGTCTGCTCTGAGTTTTATAGGCACGGATTATTTACTAATATTTTCTTCTTATGTTGGGGTGGAAGTACCTTGCAATTGCTTTTAAGTTCATGTTTGATTTCTTCAATCCCTTTTCTTTTTAGAATTTGCCTGTGGGACTGTTGATGCATAAAGACCATGTTTACAATATATTGTGGATATAATTAGCTCCAATTTGGTTTATTTTATACTTGTATTGTCAATGGAGTGATGAATCTGTGTCCTTCGAGGCAGTACTGAACTACAGAAGTTACTCCAAATGCATTTTGTTAGTGAAGTCAAGATTTATTTGCATTGATGTTCTTTCATCAGCATTTTGAGCCTCATTTAGAAGTATAAAACGTTAGATACAATGTTAATGTTCTTATCACTTCGGAAGCCATATGGGGTTGATATTATGTTCAATTATCTAAGTTCTAATTAATCACATTCTCTTCTGATAGTCTTACATAGTGTATCCTCCCGAGGGACCGAGGCCTCCGTCTCCGGAAGAAGTAAGAGAGATGGCACGCGAATTGGCTCGAAAGAACAACATTCGTTGATGATATGTGGTCTGTTTCTACTGCAATTTAGGCCATATTTTTGGAGTTGTCGAGCTAATTAGATTGCATGTATTTATCTGTTTATAGAGGAGTGA

mRNA sequence

ATGGCTCCTGTCGGCTGTCAGTGGATTGATGACGTGGCTTACTACTCGCATGATTTAAGCAATTTGGCGGCGGTGGAGATGCCACGTGGAAATACAGTTCACCTATCTCGGAAATCCATTTACCAAGGAGCTGGAGGACGAAAACAAGTGGGCTTAGCCCAAGTCCATCGCTCATCTCCCTTCGGCCCAACCATTTTGCTCTACTACTTTTTTTTTGCTTCGTACTGGCTCCTCCTCTCTTTCAGCAGCTCAGTCTCGCCGTCGCCGCCGCCGTCTTTCTTCCGCTCCTGCTTCCGCAGCCTCCCTCCTACCGGGTTCGCACCGACTTTCAAGTCTCTTGTTGTTACTTGTTACTGGTATTCCATTGCAATCTATCTCTTCGGCAATTGGAAAGCCATTTGGCTCTCATCTATTCGGCTTTTCTTTCTGCTTCCTTTTGGTTACACCACCGCTAATCTATTTCTTTTTGCTTCTTCCCTTTTGCAAGGACATTCTAGGCAAAAACCTACAGAGATTCATGGGCAAATCTTACATAGTGTATCCTCCCGAGGGACCGAGGCCTCCGTCTCCGGAAGAAGTAAGAGAGATGGCACGCGAATTGGCTCGAAAGAACAACATTCGTTGATGATATGTGAGGAGTGA

Coding sequence (CDS)

ATGGCTCCTGTCGGCTGTCAGTGGATTGATGACGTGGCTTACTACTCGCATGATTTAAGCAATTTGGCGGCGGTGGAGATGCCACGTGGAAATACAGTTCACCTATCTCGGAAATCCATTTACCAAGGAGCTGGAGGACGAAAACAAGTGGGCTTAGCCCAAGTCCATCGCTCATCTCCCTTCGGCCCAACCATTTTGCTCTACTACTTTTTTTTTGCTTCGTACTGGCTCCTCCTCTCTTTCAGCAGCTCAGTCTCGCCGTCGCCGCCGCCGTCTTTCTTCCGCTCCTGCTTCCGCAGCCTCCCTCCTACCGGGTTCGCACCGACTTTCAAGTCTCTTGTTGTTACTTGTTACTGGTATTCCATTGCAATCTATCTCTTCGGCAATTGGAAAGCCATTTGGCTCTCATCTATTCGGCTTTTCTTTCTGCTTCCTTTTGGTTACACCACCGCTAATCTATTTCTTTTTGCTTCTTCCCTTTTGCAAGGACATTCTAGGCAAAAACCTACAGAGATTCATGGGCAAATCTTACATAGTGTATCCTCCCGAGGGACCGAGGCCTCCGTCTCCGGAAGAAGTAAGAGAGATGGCACGCGAATTGGCTCGAAAGAACAACATTCGTTGATGATATGTGAGGAGTGA

Protein sequence

MAPVGCQWIDDVAYYSHDLSNLAAVEMPRGNTVHLSRKSIYQGAGGRKQVGLAQVHRSSPFGPTILLYYFFFASYWLLLSFSSSVSPSPPPSFFRSCFRSLPPTGFAPTFKSLVVTCYWYSIAIYLFGNWKAIWLSSIRLFFLLPFGYTTANLFLFASSLLQGHSRQKPTEIHGQILHSVSSRGTEASVSGRSKRDGTRIGSKEQHSLMICEE

Homology

The following BLAST results are available for this feature:

BLAST of Clc06G06930 vs.


Match Name	E-value	Identity	Description

BLAST of Clc06G06930 vs.


Match Name	E-value	Identity	Description

BLAST of Clc06G06930 vs.


Match Name	E-value	Identity	Description

BLAST of Clc06G06930 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 189..213
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 181..213

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc06G06930.1	Clc06G06930.1	mRNA