Clc06G05990 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc06G05990
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Unknown protein
Location	ClcChr06: 6121323 .. 6122860 (+)
RNA-Seq Expression	Clc06G05990
Synteny	Clc06G05990

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGTGCCGGAGTGTGGCTGCCGCAGAGAGTGAGGGAGAAAATTATAAAAGTTAGTCGATGGGATCCGGTCTAAGAATTAATATTTTATAAATTCCATTAACTCTTAAAAGTTGTAAGGTGAGACAGATTATCCGATAAAGTTGTTGAAGTGCAAGTAAGTTGTCTAATCCACATATACCAAATATATTTACAAAAATATTGGACAAAAATGATAGTAGTGGGCAGGGTTCATTTTTCTTTCCTAAAATGTAAACATATGACAAAATAGGGGGAAAAAATGAAAGAACATTATTTTCTATATGAACTGTAATAGCAAATATGTATATGTAATTTTGATTTTTTCTTAACAATTCAGGCAATAAATGTATTTTTTCATTAAGTTGACTTGTTTTGATTGTTTTACTTTCATTATAGAATTAGTGTTTTTAATTAAAAAAATGTCTCGTAATTATTAATATAATTTTCTTCAAAATGACGAGGGAGAAAAAAAAAAAGTAAAATTACATTTTTTTTTTTTTGTGTTTTTAGAGTGATTATGTATTTTTTTTCATTGAAATTTAGTTTTTTATGATTTGAAAAATACTAAAATTTAGTCTCTATGATTTATAATTAGAATTTAGTTTTGATAGTTTAGTAAAATCTTCACAAATAGTCCTTAAATAGAGAGCGTTTATGAAGATTTTATCAAACTATAGGAACTATTTATGTGATTTTAGTATTTTACAAAACTATGAGAACTAAATTTTAATTTTAAACTATAGGAACAAAATTATAACTTTCTCCAACTATAAAGATCAAATTTGTAACTAAACCATCTTATGATAACCAATTGGAAAAATATCAATCTATACCCTTAATTTTAGGGGTTGTATTAGTTTAAACCCTAATCTTTTGTTAACGTATCATTCTATACCCTCAATTGTGTTTTGTTTGGAAAACAATTGTGTAAAATTTATAATTGTATCAATTAAACCCTTAAACTTTCACAAATGAATAAATTTAGACTCATAGACATAATTTTCTTCAAAAATCGTCGATGCATTTACTCTATTCGTCCAGTTTTTAAAAATTCGCATTTGAAGAACTCTCCACGCTATGAACATAATGCATTAATACACTGATTAGGTTATGAAAAGTTAGGACTAAAAAAAAGAAAATTAAACCCCTACGGGACGACAATCGTTAGGTCAAACCGATACATCGGAAAGCTGAAAACGAAACGACGTCGGTCCAGTTCTGTCCGCGATGGGAAGGATCATCATATTCCTTGCCAAACAACCCGCATTGTTCTTCCCTCGTCCAGTTCCATCGTTGATTTCGTAAGCATACGCCATACTTGGGAATAATAAAAGCATCGTTTTTCTTTTTCCTTTGTTTGATTAAACAAAAGAAAATGTGAATGTTTGGTTGAAGATTCCGTCAGAATTTTCTCACGAACAATTGAATACAGAAACAACAGAGCAGCTGTGCGAGGAAGAAGACGGAGAAGAACAGCGCTTCTGAAAATTCTGTTGAATTCACAGAAGATCGTTAG

mRNA sequence

ATGGGAGTGCCGGAGTGTGGCTGCCGCAGAGAGTCAAACCGATACATCGGAAAGCTGAAAACGAAACGACGTCGGTCCAGTTCTGTCCGCGATGGGAAGGATCATCATATTCCTTGCCAAACAACCCGCATTGTTCTTCCCTCGTCCAGTTCCATCGTTGATTTCAAACAACAGAGCAGCTGTGCGAGGAAGAAGACGGAGAAGAACAGCGCTTCTGAAAATTCTGTTGAATTCACAGAAGATCGTTAG

Coding sequence (CDS)

ATGGGAGTGCCGGAGTGTGGCTGCCGCAGAGAGTCAAACCGATACATCGGAAAGCTGAAAACGAAACGACGTCGGTCCAGTTCTGTCCGCGATGGGAAGGATCATCATATTCCTTGCCAAACAACCCGCATTGTTCTTCCCTCGTCCAGTTCCATCGTTGATTTCAAACAACAGAGCAGCTGTGCGAGGAAGAAGACGGAGAAGAACAGCGCTTCTGAAAATTCTGTTGAATTCACAGAAGATCGTTAG

Protein sequence

MGVPECGCRRESNRYIGKLKTKRRRSSSVRDGKDHHIPCQTTRIVLPSSSSIVDFKQQSSCARKKTEKNSASENSVEFTEDR

Homology

The following BLAST results are available for this feature:

BLAST of Clc06G05990 vs.


Match Name	E-value	Identity	Description

BLAST of Clc06G05990 vs.


Match Name	E-value	Identity	Description

BLAST of Clc06G05990 vs.


Match Name	E-value	Identity	Description

BLAST of Clc06G05990 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..82
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 17..42
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..82

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc06G05990.1	Clc06G05990.1	mRNA