Clc06G05460 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc06G05460
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	protein SRC2-like
Location	ClcChr06: 5616841 .. 5617477 (+)
RNA-Seq Expression	Clc06G05460
Synteny	Clc06G05460

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCTATTAAAAAAATGGAGCCTTCAACGACGTCGTTTAAGGACAATGAAAAGCCGACTGCCGCCGACCCCACCCGAGGAATTGGACATCCACCAGAAGTATATCCTCCACCACCACACTACGGCGGCGGCTACCCACCAGCAGGATACGCTCCGCCACCGCCAATGGCCGGATACGGTGGACATGCTTCGCCACCACCACCGTATGGCGGGTTTCCGCCGCCGTACAACACTGGGCCCTACACTCCACCTCCACAAGCTTACGGTTATCCACATCATCCGCCACCGGCTTATAGTTATGCTCCGCCGCCAGGATATCAGCCGGCGGCGAACGCTCCAACAAAGAAAAAGAAGAAGTCAGGGATGAGTAAAATTCTTGGAATGGGAGCAGGGTTGGTTGGCGGAGTGGTCGGAGGGCTTTTGCTCGGCGAACTGGCGGCGGATGGTGGAGCGGCGGCGCCGTCGTTCGAGTTATTTTCCGATCCCACTGGCGGCGGCATGGATTACAATGCAAGCATGCAATCTATGTCTAATAGTATGGATACACTCGGTACCATTGGGTGATATATAAAATATTAATATCACAGAAATTATTGTGCTTTTCTGAATTTATTTTTTTTTAATTTTAATTTTAATTTT

mRNA sequence

CTCTATTAAAAAAATGGAGCCTTCAACGACGTCGTTTAAGGACAATGAAAAGCCGACTGCCGCCGACCCCACCCGAGGAATTGGACATCCACCAGAAGTATATCCTCCACCACCACACTACGGCGGCGGCTACCCACCAGCAGGATACGCTCCGCCACCGCCAATGGCCGGATACGGTGGACATGCTTCGCCACCACCACCGTATGGCGGGTTTCCGCCGCCGTACAACACTGGGCCCTACACTCCACCTCCACAAGCTTACGGTTATCCACATCATCCGCCACCGGCTTATAGTTATGCTCCGCCGCCAGGATATCAGCCGGCGGCGAACGCTCCAACAAAGAAAAAGAAGAAGTCAGGGATGAGTAAAATTCTTGGAATGGGAGCAGGGTTGGTTGGCGGAGTGGTCGGAGGGCTTTTGCTCGGCGAACTGGCGGCGGATGGTGGAGCGGCGGCGCCGTCGTTCGAGTTATTTTCCGATCCCACTGGCGGCGGCATGGATTACAATGCAAGCATGCAATCTATGTCTAATAGTATGGATACACTCGGTACCATTGGGTGATATATAAAATATTAATATCACAGAAATTATTGTGCTTTTCTGAATTTATTTTTTTTTAATTTTAATTTTAATTTT

Coding sequence (CDS)

ATGGAGCCTTCAACGACGTCGTTTAAGGACAATGAAAAGCCGACTGCCGCCGACCCCACCCGAGGAATTGGACATCCACCAGAAGTATATCCTCCACCACCACACTACGGCGGCGGCTACCCACCAGCAGGATACGCTCCGCCACCGCCAATGGCCGGATACGGTGGACATGCTTCGCCACCACCACCGTATGGCGGGTTTCCGCCGCCGTACAACACTGGGCCCTACACTCCACCTCCACAAGCTTACGGTTATCCACATCATCCGCCACCGGCTTATAGTTATGCTCCGCCGCCAGGATATCAGCCGGCGGCGAACGCTCCAACAAAGAAAAAGAAGAAGTCAGGGATGAGTAAAATTCTTGGAATGGGAGCAGGGTTGGTTGGCGGAGTGGTCGGAGGGCTTTTGCTCGGCGAACTGGCGGCGGATGGTGGAGCGGCGGCGCCGTCGTTCGAGTTATTTTCCGATCCCACTGGCGGCGGCATGGATTACAATGCAAGCATGCAATCTATGTCTAATAGTATGGATACACTCGGTACCATTGGGTGA

Protein sequence

MEPSTTSFKDNEKPTAADPTRGIGHPPEVYPPPPHYGGGYPPAGYAPPPPMAGYGGHASPPPPYGGFPPPYNTGPYTPPPQAYGYPHHPPPAYSYAPPPGYQPAANAPTKKKKKSGMSKILGMGAGLVGGVVGGLLLGELAADGGAAAPSFELFSDPTGGGMDYNASMQSMSNSMDTLGTIG

Homology

[Close]

BLAST of Clc06G05460 vs. NCBI nr
Match: XP_038875072.1 (formin-like protein 20 [Benincasa hispida])

HSP 1 Score: 266.9 bits (681), Expect = 1.3e-67
Identity = 151/185 (81.62%), Postives = 157/185 (84.86%), Query Frame = 0


Query: 1   MEPSTTSFKDNEKPTAADPTRGIGHPPEVYPPPPHYGGGYPPAGYAPPPPMAGYGGHASP 60
           ME STTSFKDNEKPTAA PTRG      VYPPPPHYGGG+PPAGYAPPPPM GYGGH SP
Sbjct: 1   MESSTTSFKDNEKPTAACPTRG-----TVYPPPPHYGGGHPPAGYAPPPPMPGYGGHLSP 60

Query: 61  PPPYGGFPPPYNTGPYTPPPQAYGYPHH--PPPAYSYAPPPGYQPAANAPTKKKKKSGMS 120
           PPPY  FPPPYN GPYTPPPQ YGYPHH  PPPAY YAPPPG +PA NAPT KKKKSGMS
Sbjct: 61  PPPYSPFPPPYNIGPYTPPPQPYGYPHHPPPPPAYGYAPPPGNRPAGNAPT-KKKKSGMS 120

Query: 121 KILGMGAGLVGGVVGGLLLGELAADGGAAAPSFELFSDPT-GGGMDYNASMQSMSNSMDT 180
           KILGMGAGL    VGGLLLGELAADGGA  PSF+LFSDPT GGG+DY+ASMQSMS+SMD 
Sbjct: 121 KILGMGAGL----VGGLLLGELAADGGAVTPSFDLFSDPTGGGGLDYDASMQSMSDSMDL 175

Query: 181 LGTIG 183
           LGTIG
Sbjct: 181 LGTIG 175

[Close]

BLAST of Clc06G05460 vs. NCBI nr
Match: XP_023006250.1 (polyadenylation factor subunit 2-like [Cucurbita maxima])

HSP 1 Score: 259.6 bits (662), Expect = 2.0e-65
Identity = 144/187 (77.01%), Postives = 156/187 (83.42%), Query Frame = 0


Query: 1   MEPSTTSFKDNEKPTAADPTRGIGHPPEVYPPPPHYGGGYPPAGYAPPPPMAGYGGHASP 60
           ME STTS KDN KP A+ PTRGIGHPPEVYPPPP+YGGGYPPAGYAPPPPM GYGG+ SP
Sbjct: 1   MEYSTTSSKDNAKPAASYPTRGIGHPPEVYPPPPNYGGGYPPAGYAPPPPMPGYGGYPSP 60

Query: 61  PPPYGGFPPPYNTGPYTPPPQAYGYPHH--PPPAYSYAPP-PGYQPAANAPTKKKKKSGM 120
           PPPYG +PPPYNTGPY   PQAYGYPHH  PPPAY Y PP PGY PA NAPT  KKK G 
Sbjct: 61  PPPYGAYPPPYNTGPYA--PQAYGYPHHPPPPPAYVYGPPLPGYPPATNAPTTGKKKKGK 120

Query: 121 SKILGMGAGLVGGVVGGLLLGELAADGGAAAPSFELFSDPTGGGMDY--NASMQSMSNSM 180
           SK+LG+GAGL+GGVVGGLLLG+ AAD GAAAPSFELFSD TGGG D   +A MQS+S+S+
Sbjct: 121 SKMLGLGAGLLGGVVGGLLLGDFAADAGAAAPSFELFSDATGGGFDQLCDARMQSVSDSI 180

Query: 181 DTLGTIG 183
           D LGTIG
Sbjct: 181 DLLGTIG 185

[Close]

BLAST of Clc06G05460 vs. NCBI nr
Match: KAG6575060.1 (hypothetical protein SDJN03_25699, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 256.1 bits (653), Expect = 2.2e-64
Identity = 143/187 (76.47%), Postives = 153/187 (81.82%), Query Frame = 0


Query: 1   MEPSTTSFKDNEKPTAADPTRGIGHPPEVYPPPPHYGGGYPPAGYAPPPPMAGYGGHASP 60
           ME STTS KDN KP A  PTRGIGHPPEVYPPPP+YGGGYPPAGYAPPPPM GYGG+ SP
Sbjct: 1   MESSTTSSKDNAKPAATYPTRGIGHPPEVYPPPPNYGGGYPPAGYAPPPPMPGYGGYPSP 60

Query: 61  PPPYGGFPPPYNTGPYTPPPQAYGYPHH--PPPAYSYA-PPPGYQPAANAPTKKKKKSGM 120
           PPPYG +P PYNTGPY   PQAYGYPHH  PPPAY Y  PPPGY PA NAPT  KKK G 
Sbjct: 61  PPPYGAYPAPYNTGPYA--PQAYGYPHHPPPPPAYVYGPPPPGYPPATNAPTTGKKKKGK 120

Query: 121 SKILGMGAGLVGGVVGGLLLGELAADGGAAAPSFELFSDPTGGGMDY--NASMQSMSNSM 180
           SK+LG+GAGL+GGVVGGLLLG+ AAD GAAAPSFELFSD TGGG D   +A MQS S+S+
Sbjct: 121 SKMLGLGAGLLGGVVGGLLLGDFAADAGAAAPSFELFSDATGGGFDQLCDARMQSASDSI 180

Query: 181 DTLGTIG 183
           D LGTIG
Sbjct: 181 DLLGTIG 185

[Close]

BLAST of Clc06G05460 vs. NCBI nr
Match: XP_022959345.1 (protein SRC2-like [Cucurbita moschata])

HSP 1 Score: 255.4 bits (651), Expect = 3.8e-64
Identity = 142/187 (75.94%), Postives = 153/187 (81.82%), Query Frame = 0


Query: 1   MEPSTTSFKDNEKPTAADPTRGIGHPPEVYPPPPHYGGGYPPAGYAPPPPMAGYGGHASP 60
           ME STTS KDN KP A  PTRGIGHPPEVYPPPP+YGGGYPP+GYAPPPPM GYGG+ SP
Sbjct: 1   MESSTTSSKDNAKPAAPYPTRGIGHPPEVYPPPPNYGGGYPPSGYAPPPPMPGYGGYPSP 60

Query: 61  PPPYGGFPPPYNTGPYTPPPQAYGYPHH--PPPAYSYA-PPPGYQPAANAPTKKKKKSGM 120
           PPPYG +P PYNTGPY   PQAYGYPHH  PPPAY Y  PPPGY PA NAPT  KKK GM
Sbjct: 61  PPPYGAYPAPYNTGPYA--PQAYGYPHHPPPPPAYVYGPPPPGYPPATNAPTTGKKKKGM 120

Query: 121 SKILGMGAGLVGGVVGGLLLGELAADGGAAAPSFELFSDPTGGGMDY--NASMQSMSNSM 180
           SK+LG+GAGL+GGVVGGLLLG+ AAD GAAAPSFE FSD TGGG D   +A MQS S+S+
Sbjct: 121 SKMLGLGAGLLGGVVGGLLLGDFAADAGAAAPSFEFFSDATGGGFDQLCDARMQSASDSI 180

Query: 181 DTLGTIG 183
           D LGTIG
Sbjct: 181 DLLGTIG 185

[Close]

BLAST of Clc06G05460 vs. NCBI nr
Match: XP_023548312.1 (formin-like protein 20 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 252.3 bits (643), Expect = 3.2e-63
Identity = 141/186 (75.81%), Postives = 153/186 (82.26%), Query Frame = 0


Query: 1   MEPSTTSFKDNEKPTAADPTRGIGHPPEVYPPPPHYGGGYPPAGYAPPPPMAGYGGHASP 60
           ME STTS K N KP A+ PTRGIGHPPE YPPPP+YGGGYPPAGYAPPPPM GYGG+ SP
Sbjct: 1   MESSTTSSKANAKPAASYPTRGIGHPPEGYPPPPNYGGGYPPAGYAPPPPMPGYGGYPSP 60

Query: 61  PPPYGGFPPPYNTGPYTPPPQAYGYPHH--PPPAYSYA-PPPGYQPAANAPTKKKKKSGM 120
           PPPYG +PPPYNTGPY   PQAYGYPHH  PPPAY Y  PPPGY PA NAPT  KKK G 
Sbjct: 61  PPPYGAYPPPYNTGPYA--PQAYGYPHHPPPPPAYVYGPPPPGYPPATNAPTTGKKKKGK 120

Query: 121 SKILGMGAGLVGGVVGGLLLGELAADGGAAAPSFELFSDPTGGGMDY--NASMQSMSNSM 180
           SK+LG+GAGL+GGVVGGLLLG+ AAD GAAAPSFELFSD TGGG D   +A MQS+S+S+
Sbjct: 121 SKMLGLGAGLLGGVVGGLLLGDFAADAGAAAPSFELFSDATGGGFDQLCDARMQSVSDSI 180

Query: 181 DTLGTI 182
           D LGTI
Sbjct: 181 DLLGTI 184

[Close]

BLAST of Clc06G05460 vs. ExPASy Swiss-Prot
Match: Q54WH2 (Formin-A OS=Dictyostelium discoideum OX=44689 GN=forA PE=1 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 2.0e-04
Identity = 48/103 (46.60%), Postives = 51/103 (49.51%), Query Frame = 0


Query: 14  PTAADPTRGIGHPPEVYPPPPHYGGGYPPAGYAPPPPMAGYGGHASPPPPYGGFPPPYNT 73
           P    P  G G PP   PPPP  GGG PP    PPPPM G GG   PPPP GG PPP   
Sbjct: 666 PPPPPPMTGGGGPPPPPPPPPMTGGGPPPP--PPPPPMTG-GGPPPPPPPPGGGPPP--- 725

Query: 74  GPYTPPPQAYGYPHHPPPAYSYAPPP-----GYQPAANAPTKK 112
            P  PP    G P  PPP +   PPP     G + AA  P K+
Sbjct: 726 -PPPPPGAKAGGPPPPPPPFGKGPPPPPGGFGMKKAAAPPRKE 761

[Close]

BLAST of Clc06G05460 vs. ExPASy TrEMBL
Match: A0A6J1KZM6 (polyadenylation factor subunit 2-like OS=Cucurbita maxima OX=3661 GN=LOC111499038 PE=4 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 9.7e-66
Identity = 144/187 (77.01%), Postives = 156/187 (83.42%), Query Frame = 0


Query: 1   MEPSTTSFKDNEKPTAADPTRGIGHPPEVYPPPPHYGGGYPPAGYAPPPPMAGYGGHASP 60
           ME STTS KDN KP A+ PTRGIGHPPEVYPPPP+YGGGYPPAGYAPPPPM GYGG+ SP
Sbjct: 1   MEYSTTSSKDNAKPAASYPTRGIGHPPEVYPPPPNYGGGYPPAGYAPPPPMPGYGGYPSP 60

Query: 61  PPPYGGFPPPYNTGPYTPPPQAYGYPHH--PPPAYSYAPP-PGYQPAANAPTKKKKKSGM 120
           PPPYG +PPPYNTGPY   PQAYGYPHH  PPPAY Y PP PGY PA NAPT  KKK G 
Sbjct: 61  PPPYGAYPPPYNTGPYA--PQAYGYPHHPPPPPAYVYGPPLPGYPPATNAPTTGKKKKGK 120

Query: 121 SKILGMGAGLVGGVVGGLLLGELAADGGAAAPSFELFSDPTGGGMDY--NASMQSMSNSM 180
           SK+LG+GAGL+GGVVGGLLLG+ AAD GAAAPSFELFSD TGGG D   +A MQS+S+S+
Sbjct: 121 SKMLGLGAGLLGGVVGGLLLGDFAADAGAAAPSFELFSDATGGGFDQLCDARMQSVSDSI 180

Query: 181 DTLGTIG 183
           D LGTIG
Sbjct: 181 DLLGTIG 185

[Close]

BLAST of Clc06G05460 vs. ExPASy TrEMBL
Match: A0A6J1H610 (protein SRC2-like OS=Cucurbita moschata OX=3662 GN=LOC111460345 PE=4 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 1.8e-64
Identity = 142/187 (75.94%), Postives = 153/187 (81.82%), Query Frame = 0


Query: 1   MEPSTTSFKDNEKPTAADPTRGIGHPPEVYPPPPHYGGGYPPAGYAPPPPMAGYGGHASP 60
           ME STTS KDN KP A  PTRGIGHPPEVYPPPP+YGGGYPP+GYAPPPPM GYGG+ SP
Sbjct: 1   MESSTTSSKDNAKPAAPYPTRGIGHPPEVYPPPPNYGGGYPPSGYAPPPPMPGYGGYPSP 60

Query: 61  PPPYGGFPPPYNTGPYTPPPQAYGYPHH--PPPAYSYA-PPPGYQPAANAPTKKKKKSGM 120
           PPPYG +P PYNTGPY   PQAYGYPHH  PPPAY Y  PPPGY PA NAPT  KKK GM
Sbjct: 61  PPPYGAYPAPYNTGPYA--PQAYGYPHHPPPPPAYVYGPPPPGYPPATNAPTTGKKKKGM 120

Query: 121 SKILGMGAGLVGGVVGGLLLGELAADGGAAAPSFELFSDPTGGGMDY--NASMQSMSNSM 180
           SK+LG+GAGL+GGVVGGLLLG+ AAD GAAAPSFE FSD TGGG D   +A MQS S+S+
Sbjct: 121 SKMLGLGAGLLGGVVGGLLLGDFAADAGAAAPSFEFFSDATGGGFDQLCDARMQSASDSI 180

Query: 181 DTLGTIG 183
           D LGTIG
Sbjct: 181 DLLGTIG 185

[Close]

BLAST of Clc06G05460 vs. ExPASy TrEMBL
Match: A0A6J1CB10 (protein SRC2-like OS=Momordica charantia OX=3673 GN=LOC111009847 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 7.8e-23
Identity = 89/180 (49.44%), Postives = 105/180 (58.33%), Query Frame = 0


Query: 4   STTSFKD-NEKPTAADPTRGIGHPPEVYPPPPHYGGGYPPAGYAPPPPMAGYGGHASPPP 63
           +T SF+D  +KP AA  TRGIG PPE YPPPPH     P AGY PPP             
Sbjct: 112 ATASFRDEKQKPPAAYATRGIGPPPEGYPPPPH-----PAAGYPPPP------------- 171

Query: 64  PYGGFPPPYNTGPYTPPPQAYGYPHHPPPAYSYAPPPGYQPAANAPTKKKKKSGMSKILG 123
                PPPYNTG   PPPQ YGYPH+  PA    PPPGY PAA    KK+ KSGM KIL 
Sbjct: 172 -----PPPYNTGYAPPPPQPYGYPHYGYPA---PPPPGYLPAAGVVAKKETKSGMGKILA 231

Query: 124 MGAGLVGGVVGGLLLGELAADGGAAAPSFELFSDPTGGGMDYNASMQSMSNSMDTLGTIG 183
           +GAG++GG+  G +LGE AAD G   PS       +G G  + ++  SM+ S +TLG IG
Sbjct: 232 VGAGILGGLACGAMLGECAADLG-QPPS---RGSSSGNGGVHRSNFSSMAYSQNTLGGIG 261

[Close]

BLAST of Clc06G05460 vs. ExPASy TrEMBL
Match: A0A5J5C465 (Glutathione transferase OS=Nyssa sinensis OX=561372 GN=F0562_000604 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.2e-12
Identity = 66/150 (44.00%), Postives = 80/150 (53.33%), Query Frame = 0


Query: 12  EKPTAADPTRGIGHPPEVYPPPPHY--------GGGYPP-AGYAPPPPMAGYGGHASPPP 71
           ++P  A P   +      YPPPP Y         GGYPP  GYA PPP+AGYG    P P
Sbjct: 145 DEPVTAYPAAPVAGTSSAYPPPPQYAAGPYPPPAGGYPPHEGYA-PPPVAGYGYPPPPQP 204

Query: 72  PYGGFPPPYNTGPYTPPPQAYGYPHHPPPAYSYAPPPGYQPAANAPTKKKKKSGMSKILG 131
            YGG+PP        PPPQ  GYP  PP  Y Y P PGY        +KK K G    LG
Sbjct: 205 QYGGYPP--------PPPQYGGYPPPPPQGYGYPPQPGYGYQPVQQPQKKNKFG----LG 264

Query: 132 MGAGLVGGVVGGLLLGELAADGGAAAPSFE 153
           +GAGL+GG +GGLL+G++ +D G     F+
Sbjct: 265 LGAGLLGGALGGLLIGDMISDAGDYGGGFD 281

[Close]

BLAST of Clc06G05460 vs. ExPASy TrEMBL
Match: A0A5B7A2N0 (Putative cytokinesis protein sepA-like (Fragment) OS=Davidia involucrata OX=16924 GN=Din_020330 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 4.7e-12
Identity = 65/149 (43.62%), Postives = 77/149 (51.68%), Query Frame = 0


Query: 6   TSFKDNEKPTAADPTRGIGHPPEVYPPPPHY--GGGYPPAGYAPPPPMAGYGGHASPPPP 65
           T+ K +E  TA      +  P   YPPPP Y   GGYPP     PPP  GY      PPP
Sbjct: 187 TAAKSDEPVTAYPAPATLAGPSSAYPPPPSYAGAGGYPPPPGGYPPPAGGY------PPP 246

Query: 66  YGGFPPPYNTGPYTPPPQAYGYPHHPPPAYSYAPPPGY-QPAANAPTKKKKKSGMSKILG 125
            GG+PP    G   PPP   GYP  PPP Y Y P PGY  P    P KK         LG
Sbjct: 247 PGGYPPAPVAGYGYPPPAYGGYPPPPPPGYGYPPQPGYGYPPVQQPPKKNNMG-----LG 306

Query: 126 MGAGLVGGVVGGLLLGELAADGGAAAPSF 152
           +GAGL+GG +GGLL+G++ +D G+    F
Sbjct: 307 LGAGLLGGALGGLLIGDMISDAGSYDAGF 324

[Close]

BLAST of Clc06G05460 vs. TAIR 10
Match: AT3G49845.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 43.9 bits (102), Expect = 1.6e-04
Identity = 51/121 (42.15%), Postives = 59/121 (48.76%), Query Frame = 0


Query: 7   SFKDNEKPTAADPTRGI----GHPPEVYPPPPHY------GGGYPPAGYAPPPPMAGYG- 66
           S++D + P +A P +G     G+PP  YPPP  Y        GYPPAGY  PPP  GYG 
Sbjct: 2   SYQDPQHPVSAPPPQGYPPKEGYPPAGYPPPAGYPPPQYPQAGYPPAGY--PPPQQGYGQ 61

Query: 67  GHASPPPPYGGFPPPYNTGPYTPPPQAYGYPHHPPPAYSYAPPPGYQPAANAPTKKKKKS 117
           G+     P  G+PPP    P   PPQ Y Y   PPP Y  APP           K KK S
Sbjct: 62  GY-----PAQGYPPPQY--PQGHPPQ-YPYQGPPPPHYGQAPPKN--------KKDKKDS 104

[Close]

BLAST of Clc06G05460 vs. TAIR 10
Match: AT3G16510.1 (Calcium-dependent lipid-binding (CaLB domain) family protein )

HSP 1 Score: 42.0 bits (97), Expect = 6.1e-04
Identity = 52/156 (33.33%), Postives = 65/156 (41.67%), Query Frame = 0


Query: 17  ADPTRGIGHPPEVYPPPPHYGGGYPP---AGYAPPPPMAGYGGHASPPPPYGGFPPPYNT 76
           + P +    PP  YP P  Y   YP    A Y PPPP A    +  PPP Y   PP + +
Sbjct: 211 SSPPQHYSSPPYPYPNPYQYHSHYPEQPVAVYPPPPPSA---SNLYPPPYYSTSPPQHQS 270

Query: 77  GPYTPPP------------------------QAYGYPHHPPPAYSYAPPPGYQPAANAPT 136
             Y PPP                          YGYP    P Y Y  P    P    P 
Sbjct: 271 --YPPPPGHSFHQTQPSQSFHGFAPSSPQNQHGYGYPPPTSPGYGYGCPTTQVP----PK 330

Query: 137 KKKKKSGMSKILGMGAGLVGGVVGGLLLGELAADGG 146
               K G+   LG+GAGL+GG +GGLL+ ++ +D G
Sbjct: 331 NNNNKPGLGLGLGVGAGLLGGALGGLLISDIVSDIG 357

The following BLAST results are available for this feature:

BLAST of Clc06G05460 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038875072.1	1.3e-67	81.62	formin-like protein 20 [Benincasa hispida]	[more]
XP_023006250.1	2.0e-65	77.01	polyadenylation factor subunit 2-like [Cucurbita maxima]	[more]
KAG6575060.1	2.2e-64	76.47	hypothetical protein SDJN03_25699, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022959345.1	3.8e-64	75.94	protein SRC2-like [Cucurbita moschata]	[more]
XP_023548312.1	3.2e-63	75.81	formin-like protein 20 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Clc06G05460 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q54WH2	2.0e-04	46.60	Formin-A OS=Dictyostelium discoideum OX=44689 GN=forA PE=1 SV=1	[more]

BLAST of Clc06G05460 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KZM6	9.7e-66	77.01	polyadenylation factor subunit 2-like OS=Cucurbita maxima OX=3661 GN=LOC11149903...	[more]
A0A6J1H610	1.8e-64	75.94	protein SRC2-like OS=Cucurbita moschata OX=3662 GN=LOC111460345 PE=4 SV=1	[more]
A0A6J1CB10	7.8e-23	49.44	protein SRC2-like OS=Momordica charantia OX=3673 GN=LOC111009847 PE=4 SV=1	[more]
A0A5J5C465	1.2e-12	44.00	Glutathione transferase OS=Nyssa sinensis OX=561372 GN=F0562_000604 PE=4 SV=1	[more]
A0A5B7A2N0	4.7e-12	43.62	Putative cytokinesis protein sepA-like (Fragment) OS=Davidia involucrata OX=1692...	[more]

BLAST of Clc06G05460 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G49845.1	1.6e-04	42.15	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G16510.1	6.1e-04	33.33	Calcium-dependent lipid-binding (CaLB domain) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..113
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 25..104

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc06G05460.1	Clc06G05460.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane