Clc06G05430 (gene) Watermelon (cordophanus) v2

Overview
NameClc06G05430
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description40S ribosomal protein S21
LocationClcChr06: 5588027 .. 5590409 (+)
RNA-Seq ExpressionClc06G05430
SyntenyClc06G05430
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTAGGGTTTTTCCCAACCCTAATTCTCATTCTTCCCCTCCGGCCGACTGGTATCAACTCTTCTCTCAGTTCATCTGGATTTTCCTTAGGGTTCTTTTGCTACTCTTACTTTCTTGTATTTCAGATCTGAATGCTATACGGCGTCTCTATCATTTTTTCTTTTTTTTCTTCGCTACATTGATTCTGTGATTGAGTTATTGCATTCGTTTCTGACTACTTCCGATTCCTCGAATATTTTTTTTCTTTCATATATGGATTAGAACTCAAATTTCTCAGCCTTAATCCATCGTTTTTTTATTTTTTATTTTTTATTACTGTAGCAGGTTGTTATTTAGGTATTTAACGAAACATCGTAGCCAAAATGCAGAACGAAGAGGGAAAGATCACCGAGCTTTACATTCCTAGGAAGTGGTACGTAATCAGCACATTTTGTTTGTTATTTTACACTATTTTCATTTTTGTGTCCAACCCTTTTCTGAATTTGTTTGTGGCATCTGATTTCAGCTCTGCCACAAACCGACTCATCACCTCCAAGGACCACGCCTCGGTTCAGATTAACATTGGTCACTTGGATGAGAATGGCATCTACACAGGCCAATTCTCCACTTTCGCTCTCTGTGGTTTCATCCGTGCTCAGGTTCGATTTCATGATAATTTCTGTTAATGTTTTCTGTGTGTTATGTGATTTGGTTATTCAGTGGCTGCTTCACTTGCATCATAGCATTTTCTTATTTGAATTGATTTCTGTACGTTGATGACTTGATCTATTCTGTTGAATCGCTAGGATATTATTGTGTATATCTATATTTTGATTTCAGGTACCAACTGAAATATTGTTAATAATTTCATGTGTTTTTCTTAAACGTAATTTTCATACGTGGAATGCAACGCTTTTGTGCTTTATTCTTTGATCATTTACATTTGTAGGGAGTTTTTTTTCTTACTATCTTTATTATGTAGTTAGCCATTTTATCTGAGGGCACACAAATCAGTATAGTTTTTCAGCTTCCCTGAAATGACTATAGTTTTTAACAGATATGAAATCGTTTAACCTTACTTGGTTATTCAGTAGGGTTCGATTCTCATGTTTTGTTTGCAACCTTACTTGAACATGATTTATTCTATAGGTTGTACAACTGTGTCCACTCTAATATGTTGATTTAACATGTACTTATCTGTATATAAAGAAGCAGGCAAACTAGTTTCATCAATTTCTCAAAGTAATATTGCTTTGTGTATTATTTTTCATATGGAAATATATGAAGATTATTTTATACATCTGAAATCGTTGGTTTCCAACATAATAACTCCCTATTCAAAAAATCAGATGAACCTGAAAAACCGATTAACCCGACCTAGGGTTGGGTTCAAATAAATGAAAATTTTATGGGTTGGGTTGGTTCATTGGTTCACTTAAAACAACTCAAACCAACTTGAACTTATTAATTTTAAAAAATATATATATATTTTTACTTATGATACAATTATATATACATATATTTATTTTAGTTTGATTTAATTTCATTATTTTTTAGATAATTTATTCTCCAACAACTCCTAAAAATAGAAATTATCGTGAAATTTATTTTAATGAAGTTGGTTTTTTATATATAGTGGCCCTTGTTTTTGAATTTTATGGAGGGGAAAAATTTTGCTTTGATAAGTTTTTGACATACAGAACTAGTTATCAATTTAGTGTGTGGCATTAGGGTTTCCTGTTCACGAGTTGTATTTGAAGTTGGTGGTTATGTTCTATTTTAGTTACTGTCACAAAATTCTGAAGAACTCTTGACAAGAAAAGCCCATGACAAAGCACAACTTAACAAGAATAAAACAGTGTCTTAGCCCATGTGCATATAAAACATATATTGGGTATGATTTTAATATGTAGAAGGAAATTAATGTGTTGGTGTGATGTTATATTCGACAGGGAGACGCGGACAGTGCTTTGGATAGGTTGTGGCAGAAGAAAAAAGCAGAAGTTCGCCAACAGTAGAAAGTGGAAATTTTCTTCTACTTGAAATTTTATGTTTCTAATTAAGTTTAGTTTTATTGCGAATTATGAATGTTGAGAGAGCCTAGCCTGCCTTTGCTTCTAAAGTTGTAGTGTTTGTTGGAATCTTCATTCGGTGAAGCTGGTTTTTGATCATTTATTAGTGGATTTATTCACATTTCCGTGTTTCATTTAATATCATTTTCATTTTCTAGCACCTTCCTCCTTTTTTTGGGTTTGGGATTTCAAGTTTTACCCTCAAATGAAACGACGACTGTGTTGGTTAAATTTAATATTTTCAAATACCTTTTATATTTTTATCTTTTTGTTTCTTAAGATTTTAGTTCATACTTGTGTAATTGTATCAATTAATTATTAGTTTAGAG

mRNA sequence

ATGGGTTGTTATTTAGCCAAAATGCAGAACGAAGAGGGAAAGATCACCGAGCTTTACATTCCTAGGAAGTGGTACGTAATCAGCACATTTTGTTTGTTATTTTACACTATTTTCATTTTTGTGTCCAACCCTTTTCTGAATTTGTTTGTGGCATCTGATTTCAGCTCTGCCACAAACCGACTCATCACCTCCAAGGACCACGCCTCGGTTCAGATTAACATTGGTCACTTGGATGAGAATGGCATCTACACAGGCCAATTCTCCACTTTCGCTCTCTGTGGTTTCATCCGTGCTCAGGGAGACGCGGACAGTGCTTTGGATAGGTTGTGGCAGAAGAAAAAAGCAGAAGTTCGCCAACAGTAGAAAGTGGAAATTTTCTTCTACTTGAAATTTTATGTTTCTAATTAAGTTTAGTTTTATTGCGAATTATGAATGTTGAGAGAGCCTAGCCTGCCTTTGCTTCTAAAGTTGTAGTGTTTGTTGGAATCTTCATTCGGTGAAGCTGGTTTTTGATCATTTATTAGTGGATTTATTCACATTTCCGTGTTTCATTTAATATCATTTTCATTTTCTAGCACCTTCCTCCTTTTTTTGGGTTTGGGATTTCAAGTTTTACCCTCAAATGAAACGACGACTGTGTTGGTTAAATTTAATATTTTCAAATACCTTTTATATTTTTATCTTTTTGTTTCTTAAGATTTTAGTTCATACTTGTGTAATTGTATCAATTAATTATTAGTTTAGAG

Coding sequence (CDS)

ATGGGTTGTTATTTAGCCAAAATGCAGAACGAAGAGGGAAAGATCACCGAGCTTTACATTCCTAGGAAGTGGTACGTAATCAGCACATTTTGTTTGTTATTTTACACTATTTTCATTTTTGTGTCCAACCCTTTTCTGAATTTGTTTGTGGCATCTGATTTCAGCTCTGCCACAAACCGACTCATCACCTCCAAGGACCACGCCTCGGTTCAGATTAACATTGGTCACTTGGATGAGAATGGCATCTACACAGGCCAATTCTCCACTTTCGCTCTCTGTGGTTTCATCCGTGCTCAGGGAGACGCGGACAGTGCTTTGGATAGGTTGTGGCAGAAGAAAAAAGCAGAAGTTCGCCAACAGTAG

Protein sequence

MGCYLAKMQNEEGKITELYIPRKWYVISTFCLLFYTIFIFVSNPFLNLFVASDFSSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
Homology
[Close]
BLAST of Clc06G05430 vs. NCBI nr
Match: XP_004143089.1 (40S ribosomal protein S21-2 [Cucumis sativus] >XP_038875675.1 40S ribosomal protein S21-2-like [Benincasa hispida] >KGN47181.1 hypothetical protein Csa_021003 [Cucumis sativus])

HSP 1 Score: 150.2 bits (378), Expect = 1.1e-32
Identity = 81/113 (71.68%), Postives = 81/113 (71.68%), Query Frame = 0 

Query: 8   MQNEEGKITELYIPRKWYVISTFCLLFYTIFIFVSNPFLNLFVASDFSSATNRLITSKDH 67
           MQNEEGKITELYIPRK                                SATNRLITSKDH
Sbjct: 1   MQNEEGKITELYIPRK-------------------------------CSATNRLITSKDH 60

Query: 68  ASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ 121
           ASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
Sbjct: 61  ASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ 82

[Close]
BLAST of Clc06G05430 vs. NCBI nr
Match: XP_022138832.1 (40S ribosomal protein S21-2-like [Momordica charantia] >XP_022138833.1 40S ribosomal protein S21-2-like [Momordica charantia] >XP_022138834.1 40S ribosomal protein S21-2-like [Momordica charantia])

HSP 1 Score: 149.1 bits (375), Expect = 2.5e-32
Identity = 80/113 (70.80%), Postives = 81/113 (71.68%), Query Frame = 0 

Query: 8   MQNEEGKITELYIPRKWYVISTFCLLFYTIFIFVSNPFLNLFVASDFSSATNRLITSKDH 67
           MQNEEGKITELYIPRK                                SATNRLITSKDH
Sbjct: 1   MQNEEGKITELYIPRK-------------------------------CSATNRLITSKDH 60

Query: 68  ASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ 121
           ASVQINIGH+DENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
Sbjct: 61  ASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ 82

[Close]
BLAST of Clc06G05430 vs. NCBI nr
Match: XP_004134210.2 (40S ribosomal protein S21-2 [Cucumis sativus] >XP_008438883.1 PREDICTED: 40S ribosomal protein S21-2 [Cucumis melo] >XP_008458454.1 PREDICTED: 40S ribosomal protein S21-2 [Cucumis melo] >XP_016898984.1 PREDICTED: 40S ribosomal protein S21-2 [Cucumis melo] >XP_038879937.1 40S ribosomal protein S21-2 [Benincasa hispida] >XP_038906504.1 40S ribosomal protein S21-2 [Benincasa hispida] >XP_038906506.1 40S ribosomal protein S21-2 [Benincasa hispida] >KAA0049493.1 40S ribosomal protein S21-2 [Cucumis melo var. makuwa] >KGN57104.1 hypothetical protein Csa_010287 [Cucumis sativus] >TYK16172.1 40S ribosomal protein S21-2 [Cucumis melo var. makuwa])

HSP 1 Score: 148.7 bits (374), Expect = 3.3e-32
Identity = 80/113 (70.80%), Postives = 80/113 (70.80%), Query Frame = 0 

Query: 8   MQNEEGKITELYIPRKWYVISTFCLLFYTIFIFVSNPFLNLFVASDFSSATNRLITSKDH 67
           MQNEEGKITELYIPRK                                SATNRLITSKDH
Sbjct: 1   MQNEEGKITELYIPRK-------------------------------CSATNRLITSKDH 60

Query: 68  ASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ 121
           ASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKK EVRQQ
Sbjct: 61  ASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVRQQ 82

[Close]
BLAST of Clc06G05430 vs. NCBI nr
Match: XP_022959408.1 (40S ribosomal protein S21-2 isoform X1 [Cucurbita moschata] >XP_022959409.1 40S ribosomal protein S21-2 isoform X1 [Cucurbita moschata])

HSP 1 Score: 147.9 bits (372), Expect = 5.6e-32
Identity = 78/115 (67.83%), Postives = 81/115 (70.43%), Query Frame = 0 

Query: 6   AKMQNEEGKITELYIPRKWYVISTFCLLFYTIFIFVSNPFLNLFVASDFSSATNRLITSK 65
           A MQNEEGKITELYIPRK                                SATNRLITSK
Sbjct: 27  ANMQNEEGKITELYIPRK-------------------------------CSATNRLITSK 86

Query: 66  DHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ 121
           DHASVQIN+GHLDENGIYTGQFSTFALCG+IRAQGDADSA+DRLWQKKK EVRQQ
Sbjct: 87  DHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSAIDRLWQKKKVEVRQQ 110

[Close]
BLAST of Clc06G05430 vs. NCBI nr
Match: KAG6575063.1 (40S ribosomal protein S21-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 147.9 bits (372), Expect = 5.6e-32
Identity = 78/115 (67.83%), Postives = 81/115 (70.43%), Query Frame = 0 

Query: 6   AKMQNEEGKITELYIPRKWYVISTFCLLFYTIFIFVSNPFLNLFVASDFSSATNRLITSK 65
           A MQNEEGKITELYIPRK                                SATNRLITSK
Sbjct: 32  ANMQNEEGKITELYIPRK-------------------------------CSATNRLITSK 91

Query: 66  DHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ 121
           DHASVQIN+GHLDENGIYTGQFSTFALCG+IRAQGDADSA+DRLWQKKK EVRQQ
Sbjct: 92  DHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSAIDRLWQKKKVEVRQQ 115

[Close]
BLAST of Clc06G05430 vs. ExPASy Swiss-Prot
Match: Q3E902 (40S ribosomal protein S21-2 OS=Arabidopsis thaliana OX=3702 GN=RPS21C PE=1 SV=2)

HSP 1 Score: 134.4 bits (337), Expect = 8.4e-31
Identity = 68/112 (60.71%), Postives = 76/112 (67.86%), Query Frame = 0 

Query: 8   MQNEEGKITELYIPRKWYVISTFCLLFYTIFIFVSNPFLNLFVASDFSSATNRLITSKDH 67
           MQNEEG++TELYIPRK                                SATNRLITSKDH
Sbjct: 1   MQNEEGQVTELYIPRK-------------------------------CSATNRLITSKDH 60

Query: 68  ASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQ 120
           ASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQGDADS +DRLWQKKK E +Q
Sbjct: 61  ASVQLNIGHLDANGLYTGQFTTFALCGFVRAQGDADSGVDRLWQKKKVEAKQ 81

[Close]
BLAST of Clc06G05430 vs. ExPASy Swiss-Prot
Match: Q9M337 (40S ribosomal protein S21-1 OS=Arabidopsis thaliana OX=3702 GN=RPS21B PE=1 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.2e-29
Identity = 65/113 (57.52%), Postives = 76/113 (67.26%), Query Frame = 0 

Query: 8   MQNEEGKITELYIPRKWYVISTFCLLFYTIFIFVSNPFLNLFVASDFSSATNRLITSKDH 67
           M+N+ G++TELYIPRK                                SATNR+ITSKDH
Sbjct: 1   MENDAGQVTELYIPRK-------------------------------CSATNRMITSKDH 60

Query: 68  ASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ 121
           ASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQGDADS +DRLWQKKK E +QQ
Sbjct: 61  ASVQLNIGHLDANGLYTGQFTTFALCGFVRAQGDADSGVDRLWQKKKVEAKQQ 82

[Close]
BLAST of Clc06G05430 vs. ExPASy Swiss-Prot
Match: P35687 (40S ribosomal protein S21 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS21 PE=3 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 3.5e-29
Identity = 66/113 (58.41%), Postives = 78/113 (69.03%), Query Frame = 0 

Query: 8   MQNEEGKITELYIPRKWYVISTFCLLFYTIFIFVSNPFLNLFVASDFSSATNRLITSKDH 67
           MQNEEG++ +LY+PRK                                SATNR+IT+KDH
Sbjct: 1   MQNEEGQMVDLYVPRK-------------------------------CSATNRIITAKDH 60

Query: 68  ASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ 121
           ASVQINIGH+DENG+Y G+F+TFAL GFIRAQGDADSALDRLWQK+KAEV+QQ
Sbjct: 61  ASVQINIGHVDENGLYDGRFTTFALSGFIRAQGDADSALDRLWQKRKAEVKQQ 82

[Close]
BLAST of Clc06G05430 vs. ExPASy Swiss-Prot
Match: Q41852 (40S ribosomal protein S21 OS=Zea mays OX=4577 GN=RPS21 PE=3 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 3.0e-28
Identity = 64/112 (57.14%), Postives = 74/112 (66.07%), Query Frame = 0 

Query: 8   MQNEEGKITELYIPRKWYVISTFCLLFYTIFIFVSNPFLNLFVASDFSSATNRLITSKDH 67
           MQNEEGK  +LY+PRK                                SATNR+IT+KDH
Sbjct: 1   MQNEEGKTVDLYVPRK-------------------------------CSATNRIITAKDH 60

Query: 68  ASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQ 120
           ASVQINIGHLD NG+Y G F+TFAL GF+RAQGDADS+LDRLWQKKKAE++Q
Sbjct: 61  ASVQINIGHLDANGLYDGHFTTFALSGFVRAQGDADSSLDRLWQKKKAEIKQ 81

[Close]
BLAST of Clc06G05430 vs. ExPASy Swiss-Prot
Match: Q9SMI2 (40S ribosomal protein S21 OS=Cyanophora paradoxa OX=2762 GN=RPS21 PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 3.3e-19
Identity = 50/106 (47.17%), Postives = 66/106 (62.26%), Query Frame = 0 

Query: 8   MQNEEGKITELYIPRKWYVISTFCLLFYTIFIFVSNPFLNLFVASDFSSATNRLITSKDH 67
           MQN+EGKI +LYIPRK                                SATNRLI++ DH
Sbjct: 1   MQNDEGKIVDLYIPRK-------------------------------CSATNRLISATDH 60

Query: 68  ASVQINIGHLDEN-GIYTGQFSTFALCGFIRAQGDADSALDRLWQK 113
           A+VQIN+GH+D N G+YTG ++TFALCGF+R+ G++D+AL+RL  K
Sbjct: 61  AAVQINVGHVDPNSGLYTGDYTTFALCGFVRSMGESDAALNRLCVK 75

[Close]
BLAST of Clc06G05430 vs. ExPASy TrEMBL
Match: A0A0A0KHD3 (40S ribosomal protein S21 OS=Cucumis sativus OX=3659 GN=Csa_6G194160 PE=3 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 5.5e-33
Identity = 81/113 (71.68%), Postives = 81/113 (71.68%), Query Frame = 0 

Query: 8   MQNEEGKITELYIPRKWYVISTFCLLFYTIFIFVSNPFLNLFVASDFSSATNRLITSKDH 67
           MQNEEGKITELYIPRK                                SATNRLITSKDH
Sbjct: 1   MQNEEGKITELYIPRK-------------------------------CSATNRLITSKDH 60

Query: 68  ASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ 121
           ASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
Sbjct: 61  ASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ 82

[Close]
BLAST of Clc06G05430 vs. ExPASy TrEMBL
Match: A0A6J1CCB6 (40S ribosomal protein S21 OS=Momordica charantia OX=3673 GN=LOC111009905 PE=3 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 1.2e-32
Identity = 80/113 (70.80%), Postives = 81/113 (71.68%), Query Frame = 0 

Query: 8   MQNEEGKITELYIPRKWYVISTFCLLFYTIFIFVSNPFLNLFVASDFSSATNRLITSKDH 67
           MQNEEGKITELYIPRK                                SATNRLITSKDH
Sbjct: 1   MQNEEGKITELYIPRK-------------------------------CSATNRLITSKDH 60

Query: 68  ASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ 121
           ASVQINIGH+DENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
Sbjct: 61  ASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ 82

[Close]
BLAST of Clc06G05430 vs. ExPASy TrEMBL
Match: A0A1S4DSM1 (40S ribosomal protein S21 OS=Cucumis melo OX=3656 GN=LOC103483842 PE=3 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.6e-32
Identity = 80/113 (70.80%), Postives = 80/113 (70.80%), Query Frame = 0 

Query: 8   MQNEEGKITELYIPRKWYVISTFCLLFYTIFIFVSNPFLNLFVASDFSSATNRLITSKDH 67
           MQNEEGKITELYIPRK                                SATNRLITSKDH
Sbjct: 1   MQNEEGKITELYIPRK-------------------------------CSATNRLITSKDH 60

Query: 68  ASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ 121
           ASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKK EVRQQ
Sbjct: 61  ASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVRQQ 82

[Close]
BLAST of Clc06G05430 vs. ExPASy TrEMBL
Match: A0A5D3CXC9 (40S ribosomal protein S21 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold209G001000 PE=3 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.6e-32
Identity = 80/113 (70.80%), Postives = 80/113 (70.80%), Query Frame = 0 

Query: 8   MQNEEGKITELYIPRKWYVISTFCLLFYTIFIFVSNPFLNLFVASDFSSATNRLITSKDH 67
           MQNEEGKITELYIPRK                                SATNRLITSKDH
Sbjct: 1   MQNEEGKITELYIPRK-------------------------------CSATNRLITSKDH 60

Query: 68  ASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ 121
           ASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKK EVRQQ
Sbjct: 61  ASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVRQQ 82

[Close]
BLAST of Clc06G05430 vs. ExPASy TrEMBL
Match: A0A0A0L7W3 (40S ribosomal protein S21 OS=Cucumis sativus OX=3659 GN=Csa_3G154280 PE=3 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.6e-32
Identity = 80/113 (70.80%), Postives = 80/113 (70.80%), Query Frame = 0 

Query: 8   MQNEEGKITELYIPRKWYVISTFCLLFYTIFIFVSNPFLNLFVASDFSSATNRLITSKDH 67
           MQNEEGKITELYIPRK                                SATNRLITSKDH
Sbjct: 1   MQNEEGKITELYIPRK-------------------------------CSATNRLITSKDH 60

Query: 68  ASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ 121
           ASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKK EVRQQ
Sbjct: 61  ASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVRQQ 82

[Close]
BLAST of Clc06G05430 vs. TAIR 10
Match: AT5G27700.1 (Ribosomal protein S21e )

HSP 1 Score: 134.4 bits (337), Expect = 6.0e-32
Identity = 68/112 (60.71%), Postives = 76/112 (67.86%), Query Frame = 0 

Query: 8   MQNEEGKITELYIPRKWYVISTFCLLFYTIFIFVSNPFLNLFVASDFSSATNRLITSKDH 67
           MQNEEG++TELYIPRK                                SATNRLITSKDH
Sbjct: 1   MQNEEGQVTELYIPRK-------------------------------CSATNRLITSKDH 60

Query: 68  ASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQ 120
           ASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQGDADS +DRLWQKKK E +Q
Sbjct: 61  ASVQLNIGHLDANGLYTGQFTTFALCGFVRAQGDADSGVDRLWQKKKVEAKQ 81

[Close]
BLAST of Clc06G05430 vs. TAIR 10
Match: AT3G53890.1 (Ribosomal protein S21e )

HSP 1 Score: 130.6 bits (327), Expect = 8.6e-31
Identity = 65/113 (57.52%), Postives = 76/113 (67.26%), Query Frame = 0 

Query: 8   MQNEEGKITELYIPRKWYVISTFCLLFYTIFIFVSNPFLNLFVASDFSSATNRLITSKDH 67
           M+N+ G++TELYIPRK                                SATNR+ITSKDH
Sbjct: 1   MENDAGQVTELYIPRK-------------------------------CSATNRMITSKDH 60

Query: 68  ASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ 121
           ASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQGDADS +DRLWQKKK E +QQ
Sbjct: 61  ASVQLNIGHLDANGLYTGQFTTFALCGFVRAQGDADSGVDRLWQKKKVEAKQQ 82

[Close]
BLAST of Clc06G05430 vs. TAIR 10
Match: AT3G53890.2 (Ribosomal protein S21e )

HSP 1 Score: 130.6 bits (327), Expect = 8.6e-31
Identity = 65/113 (57.52%), Postives = 76/113 (67.26%), Query Frame = 0 

Query: 8   MQNEEGKITELYIPRKWYVISTFCLLFYTIFIFVSNPFLNLFVASDFSSATNRLITSKDH 67
           M+N+ G++TELYIPRK                                SATNR+ITSKDH
Sbjct: 1   MENDAGQVTELYIPRK-------------------------------CSATNRMITSKDH 60

Query: 68  ASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ 121
           ASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQGDADS +DRLWQKKK E +QQ
Sbjct: 61  ASVQLNIGHLDANGLYTGQFTTFALCGFVRAQGDADSGVDRLWQKKKVEAKQQ 82

The following BLAST results are available for this feature:
BLAST of Clc06G05430 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004143089.11.1e-3271.6840S ribosomal protein S21-2 [Cucumis sativus] >XP_038875675.1 40S ribosomal prot... [more]
XP_022138832.12.5e-3270.8040S ribosomal protein S21-2-like [Momordica charantia] >XP_022138833.1 40S ribos... [more]
XP_004134210.23.3e-3270.8040S ribosomal protein S21-2 [Cucumis sativus] >XP_008438883.1 PREDICTED: 40S rib... [more]
XP_022959408.15.6e-3267.8340S ribosomal protein S21-2 isoform X1 [Cucurbita moschata] >XP_022959409.1 40S ... [more]
KAG6575063.15.6e-3267.8340S ribosomal protein S21-2, partial [Cucurbita argyrosperma subsp. sororia][more]
BLAST of Clc06G05430 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q3E9028.4e-3160.7140S ribosomal protein S21-2 OS=Arabidopsis thaliana OX=3702 GN=RPS21C PE=1 SV=2[more]
Q9M3371.2e-2957.5240S ribosomal protein S21-1 OS=Arabidopsis thaliana OX=3702 GN=RPS21B PE=1 SV=1[more]
P356873.5e-2958.4140S ribosomal protein S21 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS21 PE=3... [more]
Q418523.0e-2857.1440S ribosomal protein S21 OS=Zea mays OX=4577 GN=RPS21 PE=3 SV=1[more]
Q9SMI23.3e-1947.1740S ribosomal protein S21 OS=Cyanophora paradoxa OX=2762 GN=RPS21 PE=3 SV=1[more]
BLAST of Clc06G05430 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KHD35.5e-3371.6840S ribosomal protein S21 OS=Cucumis sativus OX=3659 GN=Csa_6G194160 PE=3 SV=1[more]
A0A6J1CCB61.2e-3270.8040S ribosomal protein S21 OS=Momordica charantia OX=3673 GN=LOC111009905 PE=3 SV... [more]
A0A1S4DSM11.6e-3270.8040S ribosomal protein S21 OS=Cucumis melo OX=3656 GN=LOC103483842 PE=3 SV=1[more]
A0A5D3CXC91.6e-3270.8040S ribosomal protein S21 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A0A0L7W31.6e-3270.8040S ribosomal protein S21 OS=Cucumis sativus OX=3659 GN=Csa_3G154280 PE=3 SV=1[more]
BLAST of Clc06G05430 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G27700.16.0e-3260.71Ribosomal protein S21e [more]
AT3G53890.18.6e-3157.52Ribosomal protein S21e [more]
AT3G53890.28.6e-3157.52Ribosomal protein S21e [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038579Ribosomal protein S21e superfamilyGENE3D3.30.1230.20coord: 42..119
e-value: 4.3E-30
score: 105.5
IPR001931Ribosomal protein S21ePIRSFPIRSF002148RPS21ecoord: 8..30
e-value: 0.0034
score: 15.5
coord: 45..120
e-value: 3.9E-26
score: 89.0
IPR001931Ribosomal protein S21ePFAMPF01249Ribosomal_S21ecoord: 56..114
e-value: 1.0E-26
score: 92.8
IPR001931Ribosomal protein S21ePANTHERPTHR1044240S RIBOSOMAL PROTEIN S21coord: 55..120
NoneNo IPR availablePANTHERPTHR10442:SF1340S RIBOSOMAL PROTEIN S21coord: 55..120

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc06G05430.2Clc06G05430.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000447 endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process GO:0000461 endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process GO:0006412 translation
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome