Clc06G05420 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc06G05420
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	protein RALF-like 33
Location	ClcChr06: 5575584 .. 5575967 (-)
RNA-Seq Expression	Clc06G05420
Synteny	Clc06G05420

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAATCTCACGCGTTTCTTCTCTCCTTGCCGCCTTCGCTATTTTCGCCGCTTATTTTCTTATCTCATCAGCGACGGCCGTCGATTTCTCCGGCGACCACAACCTTCTCTTCGTTCCAACCAAATCCGAGTGCCGAGGCTCAATCGCCGAGTGTTTTCTCGCCGGAAACGACGACGATTCCGCCTTCGGAATGGAGTTCGAGATGGACTCTGAGATCAATCGCCGAATTCTAGCGACGACTCGTTACATAAGCTACGGTGCTCTGAGAAGCAACACCGTTCCTTGCTCTCGCCGCGGCGCTTCTTATTACAACTGCAGACCAGGCGCTCAGGCGAATCCTTACTCCCGTGGTTGCAGCGCCATTACTCGCTGCCGAAGTTAA

mRNA sequence

ATGGGAATCTCACGCGTTTCTTCTCTCCTTGCCGCCTTCGCTATTTTCGCCGCTTATTTTCTTATCTCATCAGCGACGGCCGTCGATTTCTCCGGCGACCACAACCTTCTCTTCGTTCCAACCAAATCCGAGTGCCGAGGCTCAATCGCCGAGTGTTTTCTCGCCGGAAACGACGACGATTCCGCCTTCGGAATGGAGTTCGAGATGGACTCTGAGATCAATCGCCGAATTCTAGCGACGACTCGTTACATAAGCTACGGTGCTCTGAGAAGCAACACCGTTCCTTGCTCTCGCCGCGGCGCTTCTTATTACAACTGCAGACCAGGCGCTCAGGCGAATCCTTACTCCCGTGGTTGCAGCGCCATTACTCGCTGCCGAAGTTAA

Coding sequence (CDS)

ATGGGAATCTCACGCGTTTCTTCTCTCCTTGCCGCCTTCGCTATTTTCGCCGCTTATTTTCTTATCTCATCAGCGACGGCCGTCGATTTCTCCGGCGACCACAACCTTCTCTTCGTTCCAACCAAATCCGAGTGCCGAGGCTCAATCGCCGAGTGTTTTCTCGCCGGAAACGACGACGATTCCGCCTTCGGAATGGAGTTCGAGATGGACTCTGAGATCAATCGCCGAATTCTAGCGACGACTCGTTACATAAGCTACGGTGCTCTGAGAAGCAACACCGTTCCTTGCTCTCGCCGCGGCGCTTCTTATTACAACTGCAGACCAGGCGCTCAGGCGAATCCTTACTCCCGTGGTTGCAGCGCCATTACTCGCTGCCGAAGTTAA

Protein sequence

MGISRVSSLLAAFAIFAAYFLISSATAVDFSGDHNLLFVPTKSECRGSIAECFLAGNDDDSAFGMEFEMDSEINRRILATTRYISYGALRSNTVPCSRRGASYYNCRPGAQANPYSRGCSAITRCRS

Homology

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BLAST of Clc06G05420 vs. NCBI nr
Match: XP_038875155.1 (protein RALF-like 33 [Benincasa hispida])

HSP 1 Score: 234.6 bits (597), Expect = 4.8e-58
Identity = 118/127 (92.91%), Postives = 121/127 (95.28%), Query Frame = 0


Query: 1   MGISRVSSLLAAFAIFAAYFLISSATAVDFSGDHNLLFVPTKSECRGSIAECFLAGNDDD 60
           MGISRVSSLLAA AI AA+FLISSATAVDFSGDH LLFVPTKSECRGSIAECFLAGNDDD
Sbjct: 1   MGISRVSSLLAAVAILAAHFLISSATAVDFSGDHKLLFVPTKSECRGSIAECFLAGNDDD 60

Query: 61  SAFGMEFEMDSEINRRILATTRYISYGALRSNTVPCSRRGASYYNCRPGAQANPYSRGCS 120
           SAFGMEF MDSEINRRILATTRYISYGALR N VPCSRRGASYYNCRPGAQANPY+RGC+
Sbjct: 61  SAFGMEFVMDSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGCN 120

Query: 121 AITRCRS 128
           AITRCRS
Sbjct: 121 AITRCRS 127

[Close]

BLAST of Clc06G05420 vs. NCBI nr
Match: KAG6575064.1 (Protein RALF-like 33, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 229.6 bits (584), Expect = 1.5e-56
Identity = 112/127 (88.19%), Postives = 120/127 (94.49%), Query Frame = 0


Query: 1   MGISRVSSLLAAFAIFAAYFLISSATAVDFSGDHNLLFVPTKSECRGSIAECFLAGNDDD 60
           MGISRVS+L+AAFA+ AA+FLI SATA+DFSGD+ +LF PTKSECRGSIAECFLAGNDDD
Sbjct: 1   MGISRVSALIAAFAVLAAHFLILSATAIDFSGDNEILFAPTKSECRGSIAECFLAGNDDD 60

Query: 61  SAFGMEFEMDSEINRRILATTRYISYGALRSNTVPCSRRGASYYNCRPGAQANPYSRGCS 120
           S FGMEFEMDSEINRRILATTRYISYGALR N VPCSRRGASYYNCRPGAQANPY+RGCS
Sbjct: 61  SGFGMEFEMDSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGCS 120

Query: 121 AITRCRS 128
           AITRCRS
Sbjct: 121 AITRCRS 127

[Close]

BLAST of Clc06G05420 vs. NCBI nr
Match: XP_023547686.1 (protein RALF-like 33 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 228.4 bits (581), Expect = 3.4e-56
Identity = 111/127 (87.40%), Postives = 120/127 (94.49%), Query Frame = 0


Query: 1   MGISRVSSLLAAFAIFAAYFLISSATAVDFSGDHNLLFVPTKSECRGSIAECFLAGNDDD 60
           MGISRVS+L+AAF + AA+FLISSATA+DFSGD+ +LF PTKSECRGSIAECFLAGN+DD
Sbjct: 1   MGISRVSALIAAFVVLAAHFLISSATAIDFSGDNEILFAPTKSECRGSIAECFLAGNNDD 60

Query: 61  SAFGMEFEMDSEINRRILATTRYISYGALRSNTVPCSRRGASYYNCRPGAQANPYSRGCS 120
           S FGMEFEMDSEINRRILATTRYISYGALR N VPCSRRGASYYNCRPGAQANPY+RGCS
Sbjct: 61  SGFGMEFEMDSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGCS 120

Query: 121 AITRCRS 128
           AITRCRS
Sbjct: 121 AITRCRS 127

[Close]

BLAST of Clc06G05420 vs. NCBI nr
Match: XP_022959207.1 (protein RALF-like 33 [Cucurbita moschata])

HSP 1 Score: 227.6 bits (579), Expect = 5.9e-56
Identity = 111/127 (87.40%), Postives = 119/127 (93.70%), Query Frame = 0


Query: 1   MGISRVSSLLAAFAIFAAYFLISSATAVDFSGDHNLLFVPTKSECRGSIAECFLAGNDDD 60
           MGISRVS+L+AAFA+ AA+FLI SA A+DFSGD+ +LF PTKSECRGSIAECFLAGNDDD
Sbjct: 1   MGISRVSALIAAFAVLAAHFLILSAAAIDFSGDNEILFAPTKSECRGSIAECFLAGNDDD 60

Query: 61  SAFGMEFEMDSEINRRILATTRYISYGALRSNTVPCSRRGASYYNCRPGAQANPYSRGCS 120
           S FGMEFEMDSEINRRILATTRYISYGALR N VPCSRRGASYYNCRPGAQANPY+RGCS
Sbjct: 61  SGFGMEFEMDSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGCS 120

Query: 121 AITRCRS 128
           AITRCRS
Sbjct: 121 AITRCRS 127

[Close]

BLAST of Clc06G05420 vs. NCBI nr
Match: XP_023006467.1 (protein RALF-like 33 [Cucurbita maxima])

HSP 1 Score: 226.9 bits (577), Expect = 1.0e-55
Identity = 111/127 (87.40%), Postives = 119/127 (93.70%), Query Frame = 0


Query: 1   MGISRVSSLLAAFAIFAAYFLISSATAVDFSGDHNLLFVPTKSECRGSIAECFLAGNDDD 60
           MGISRVS+L+AAFA+ AA+FLISSATA+DFSGD+ +LF PTKSECRGSI ECFLAGN DD
Sbjct: 1   MGISRVSALIAAFAVLAAHFLISSATAIDFSGDNEILFAPTKSECRGSITECFLAGNYDD 60

Query: 61  SAFGMEFEMDSEINRRILATTRYISYGALRSNTVPCSRRGASYYNCRPGAQANPYSRGCS 120
           S FGMEFEMDSEINRRILATTRYISYGALR N VPCSRRGASYYNCRPGAQANPY+RGCS
Sbjct: 61  SGFGMEFEMDSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGCS 120

Query: 121 AITRCRS 128
           AITRCRS
Sbjct: 121 AITRCRS 127

[Close]

BLAST of Clc06G05420 vs. ExPASy Swiss-Prot
Match: Q8L9P8 (Protein RALF-like 33 OS=Arabidopsis thaliana OX=3702 GN=RALFL33 PE=2 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 1.5e-33
Identity = 77/113 (68.14%), Postives = 88/113 (77.88%), Query Frame = 0


Query: 14  AIFAAYFLISSATAVDFSGDHNLLFVPTKSECRGSIAECFLAGNDDDSAFGMEFEMDSEI 73
           AI   +FL ++ T+   SGD    FVP +S+C G+IAEC L+  ++      EFEMDSEI
Sbjct: 14  AILTVHFLFAAVTS-QSSGD----FVPIESKCNGTIAECSLSTAEE------EFEMDSEI 73

Query: 74  NRRILATTRYISYGALRSNTVPCSRRGASYYNCRPGAQANPYSRGCSAITRCR 127
           NRRILATT+YISYGALR NTVPCSRRGASYYNCR GAQANPYSRGCSAITRCR
Sbjct: 74  NRRILATTKYISYGALRRNTVPCSRRGASYYNCRRGAQANPYSRGCSAITRCR 115

[Close]

BLAST of Clc06G05420 vs. ExPASy Swiss-Prot
Match: Q9LUS7 (Rapid alkalinization factor 23 OS=Arabidopsis thaliana OX=3702 GN=RALF23 PE=1 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 2.5e-33
Identity = 82/138 (59.42%), Postives = 96/138 (69.57%), Query Frame = 0


Query: 2   GISRVSSLLAAFAIFAA-----YFLISSATAVDFSGDHNLLFVPTKSECRGSIAECFLA- 61
           G+SR S   A FAI        + +  S+ + +F+GD    F P ++ECRG+IAEC ++ 
Sbjct: 3   GLSRNSGAAAIFAILLILAVHNWSVAVSSQSTEFAGD----FPPFETECRGTIAECSVSA 62

Query: 62  --GNDDD-----SAFGMEFEMDSEINRRILATTRYISYGALRSNTVPCSRRGASYYNCRP 121
             G+  D        G EFEMDSEINRRILAT RYISYGALR NT+PCSRRGASYYNCR 
Sbjct: 63  ALGDGGDLFYGGGEMGEEFEMDSEINRRILATRRYISYGALRRNTIPCSRRGASYYNCRR 122

Query: 122 GAQANPYSRGCSAITRCR 127
           GAQANPYSRGCSAITRCR
Sbjct: 123 GAQANPYSRGCSAITRCR 136

[Close]

BLAST of Clc06G05420 vs. ExPASy Swiss-Prot
Match: Q945T0 (Rapid alkalinization factor OS=Nicotiana tabacum OX=4097 GN=RALF PE=1 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 1.1e-28
Identity = 71/110 (64.55%), Postives = 82/110 (74.55%), Query Frame = 0


Query: 20  FLISSATAVDFSGDHNLLFVPTKS--ECRGSIAECFLAGNDDDSAFGMEFEMDSEINRRI 79
           F IS A A D SG ++ + +P +S   C+GSI EC         A   EFE+DSE NRRI
Sbjct: 16  FFISMAAAGD-SGAYDWV-MPARSGGGCKGSIGECI--------AEEEEFELDSESNRRI 75

Query: 80  LATTRYISYGALRSNTVPCSRRGASYYNCRPGAQANPYSRGCSAITRCRS 128
           LAT +YISYGAL+ N+VPCSRRGASYYNC+PGAQANPYSRGCSAITRCRS
Sbjct: 76  LATKKYISYGALQKNSVPCSRRGASYYNCKPGAQANPYSRGCSAITRCRS 115

[Close]

BLAST of Clc06G05420 vs. ExPASy Swiss-Prot
Match: Q9SRY3 (Protein RALF-like 1 OS=Arabidopsis thaliana OX=3702 GN=RALF1 PE=1 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.6e-24
Identity = 66/124 (53.23%), Postives = 76/124 (61.29%), Query Frame = 0


Query: 8   SLLAAFAIFAAYFLISSATAVDFSGDHNLLFVPTK----SECRGSIAECFLAGNDDDSAF 67
           +L     I   + + S      F+ D   +   T     S C GSIAEC  A        
Sbjct: 6   TLFLTLTILVVFIISSPPVQAGFANDLGGVAWATTGDNGSGCHGSIAECIGA-------- 65

Query: 68  GMEFEMDSEINRRILATTRYISYGALRSNTVPCSRRGASYYNCRPGAQANPYSRGCSAIT 127
             E EMDSEINRRILATT+YISY +L+ N+VPCSRRGASYYNC+ GAQANPYSRGCS I 
Sbjct: 66  -EEEEMDSEINRRILATTKYISYQSLKRNSVPCSRRGASYYNCQNGAQANPYSRGCSKIA 120

[Close]

BLAST of Clc06G05420 vs. ExPASy Swiss-Prot
Match: Q9MA62 (Protein RALF-like 22 OS=Arabidopsis thaliana OX=3702 GN=RALFL22 PE=3 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 2.1e-24
Identity = 68/123 (55.28%), Postives = 81/123 (65.85%), Query Frame = 0


Query: 11  AAFAIFAAYFLISSATAVDFSGD--HNLLFVPTKSE-----CRGSIAECFLAGNDDDSAF 70
           A +A+ A   ++ S  AV+ +GD   +L FV   S      C GSIAEC         A 
Sbjct: 6   AIYAVIAILAIVIS--AVESTGDFGDSLDFVRAGSSSLFSGCTGSIAECI--------AE 65

Query: 71  GMEFEMDSEINRRILATTRYISYGALRSNTVPCSRRGASYYNCRPGAQANPYSRGCSAIT 127
             E E DS+I+RRILA  +YISYGA+R N+VPCSRRGASYYNC+ GAQANPYSRGCS IT
Sbjct: 66  EEEMEFDSDISRRILAQKKYISYGAMRRNSVPCSRRGASYYNCQRGAQANPYSRGCSTIT 118

[Close]

BLAST of Clc06G05420 vs. ExPASy TrEMBL
Match: A0A6J1H3W7 (protein RALF-like 33 OS=Cucurbita moschata OX=3662 GN=LOC111460267 PE=3 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 2.8e-56
Identity = 111/127 (87.40%), Postives = 119/127 (93.70%), Query Frame = 0


Query: 1   MGISRVSSLLAAFAIFAAYFLISSATAVDFSGDHNLLFVPTKSECRGSIAECFLAGNDDD 60
           MGISRVS+L+AAFA+ AA+FLI SA A+DFSGD+ +LF PTKSECRGSIAECFLAGNDDD
Sbjct: 1   MGISRVSALIAAFAVLAAHFLILSAAAIDFSGDNEILFAPTKSECRGSIAECFLAGNDDD 60

Query: 61  SAFGMEFEMDSEINRRILATTRYISYGALRSNTVPCSRRGASYYNCRPGAQANPYSRGCS 120
           S FGMEFEMDSEINRRILATTRYISYGALR N VPCSRRGASYYNCRPGAQANPY+RGCS
Sbjct: 61  SGFGMEFEMDSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGCS 120

Query: 121 AITRCRS 128
           AITRCRS
Sbjct: 121 AITRCRS 127

[Close]

BLAST of Clc06G05420 vs. ExPASy TrEMBL
Match: A0A6J1KVY0 (protein RALF-like 33 OS=Cucurbita maxima OX=3661 GN=LOC111499183 PE=3 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 4.9e-56
Identity = 111/127 (87.40%), Postives = 119/127 (93.70%), Query Frame = 0


Query: 1   MGISRVSSLLAAFAIFAAYFLISSATAVDFSGDHNLLFVPTKSECRGSIAECFLAGNDDD 60
           MGISRVS+L+AAFA+ AA+FLISSATA+DFSGD+ +LF PTKSECRGSI ECFLAGN DD
Sbjct: 1   MGISRVSALIAAFAVLAAHFLISSATAIDFSGDNEILFAPTKSECRGSITECFLAGNYDD 60

Query: 61  SAFGMEFEMDSEINRRILATTRYISYGALRSNTVPCSRRGASYYNCRPGAQANPYSRGCS 120
           S FGMEFEMDSEINRRILATTRYISYGALR N VPCSRRGASYYNCRPGAQANPY+RGCS
Sbjct: 61  SGFGMEFEMDSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGCS 120

Query: 121 AITRCRS 128
           AITRCRS
Sbjct: 121 AITRCRS 127

[Close]

BLAST of Clc06G05420 vs. ExPASy TrEMBL
Match: A0A6J1C9N4 (protein RALF-like 33 OS=Momordica charantia OX=3673 GN=LOC111009595 PE=3 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 1.2e-51
Identity = 108/127 (85.04%), Postives = 115/127 (90.55%), Query Frame = 0


Query: 1   MGISRVSSLLAAFAIFAAYFLISSATAVDFSGDHNLLFVPTKSECRGSIAECFLAGNDDD 60
           M ISRVSSLLAAFAIFAA+ L+SSATA DFSGDH LL+VP KSECRGSIAEC LAG  DD
Sbjct: 1   MEISRVSSLLAAFAIFAAHLLLSSATAADFSGDHKLLYVPAKSECRGSIAECLLAG--DD 60

Query: 61  SAFGMEFEMDSEINRRILATTRYISYGALRSNTVPCSRRGASYYNCRPGAQANPYSRGCS 120
           S FG EFEMDSEINRRILAT RYISYGAL+ N+VPCSRRGASYYNC+PGAQANPY+RGCS
Sbjct: 61  SGFGTEFEMDSEINRRILATMRYISYGALKRNSVPCSRRGASYYNCQPGAQANPYNRGCS 120

Query: 121 AITRCRS 128
           AITRCRS
Sbjct: 121 AITRCRS 125

[Close]

BLAST of Clc06G05420 vs. ExPASy TrEMBL
Match: A0A6J1KG89 (protein RALF-like 33 OS=Cucurbita maxima OX=3661 GN=LOC111494831 PE=3 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 1.2e-49
Identity = 102/127 (80.31%), Postives = 114/127 (89.76%), Query Frame = 0


Query: 1   MGISRVSSLLAAFAIFAAYFLISSATAVDFSGDHNLLFVPTKSECRGSIAECFLAGNDDD 60
           M ISRV S LAA AI AA+FL+SSA  VDFSGD  LLFVP +S+CRGSIAECFLAG+D+D
Sbjct: 1   MEISRVFSFLAASAIIAAHFLLSSAMVVDFSGDDKLLFVPAESKCRGSIAECFLAGDDND 60

Query: 61  SAFGMEFEMDSEINRRILATTRYISYGALRSNTVPCSRRGASYYNCRPGAQANPYSRGCS 120
           SAFGMEFEMDSEINRRILA +RY+SYGAL+ N+VPCSRRGASYYNC+PGAQANPY RGC+
Sbjct: 61  SAFGMEFEMDSEINRRILAASRYLSYGALKRNSVPCSRRGASYYNCQPGAQANPYRRGCN 120

Query: 121 AITRCRS 128
           AITRCRS
Sbjct: 121 AITRCRS 127

[Close]

BLAST of Clc06G05420 vs. ExPASy TrEMBL
Match: A0A6J1EV64 (protein RALF-like 33 OS=Cucurbita moschata OX=3662 GN=LOC111436882 PE=3 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 2.0e-49
Identity = 102/127 (80.31%), Postives = 115/127 (90.55%), Query Frame = 0


Query: 1   MGISRVSSLLAAFAIFAAYFLISSATAVDFSGDHNLLFVPTKSECRGSIAECFLAGNDDD 60
           M ISRV S LAA AI AA+FL+SSA AVDFSG   LLFVP +S+CRGSIAECFLAG+D+D
Sbjct: 1   MEISRVFSFLAASAIIAAHFLLSSAMAVDFSGGDKLLFVPAESKCRGSIAECFLAGDDND 60

Query: 61  SAFGMEFEMDSEINRRILATTRYISYGALRSNTVPCSRRGASYYNCRPGAQANPYSRGCS 120
           SAFGMEFEMDSEINRRILA++RY+SYGAL+ N+VPCSRRGASYYNC+PGAQANPY RGC+
Sbjct: 61  SAFGMEFEMDSEINRRILASSRYLSYGALKRNSVPCSRRGASYYNCQPGAQANPYRRGCN 120

Query: 121 AITRCRS 128
           AITRCRS
Sbjct: 121 AITRCRS 127

[Close]

BLAST of Clc06G05420 vs. TAIR 10
Match: AT4G15800.1 (ralf-like 33 )

HSP 1 Score: 143.7 bits (361), Expect = 1.0e-34
Identity = 77/113 (68.14%), Postives = 88/113 (77.88%), Query Frame = 0


Query: 14  AIFAAYFLISSATAVDFSGDHNLLFVPTKSECRGSIAECFLAGNDDDSAFGMEFEMDSEI 73
           AI   +FL ++ T+   SGD    FVP +S+C G+IAEC L+  ++      EFEMDSEI
Sbjct: 14  AILTVHFLFAAVTS-QSSGD----FVPIESKCNGTIAECSLSTAEE------EFEMDSEI 73

Query: 74  NRRILATTRYISYGALRSNTVPCSRRGASYYNCRPGAQANPYSRGCSAITRCR 127
           NRRILATT+YISYGALR NTVPCSRRGASYYNCR GAQANPYSRGCSAITRCR
Sbjct: 74  NRRILATTKYISYGALRRNTVPCSRRGASYYNCRRGAQANPYSRGCSAITRCR 115

[Close]

BLAST of Clc06G05420 vs. TAIR 10
Match: AT3G16570.1 (rapid alkalinization factor 23 )

HSP 1 Score: 142.9 bits (359), Expect = 1.8e-34
Identity = 82/138 (59.42%), Postives = 96/138 (69.57%), Query Frame = 0


Query: 2   GISRVSSLLAAFAIFAA-----YFLISSATAVDFSGDHNLLFVPTKSECRGSIAECFLA- 61
           G+SR S   A FAI        + +  S+ + +F+GD    F P ++ECRG+IAEC ++ 
Sbjct: 3   GLSRNSGAAAIFAILLILAVHNWSVAVSSQSTEFAGD----FPPFETECRGTIAECSVSA 62

Query: 62  --GNDDD-----SAFGMEFEMDSEINRRILATTRYISYGALRSNTVPCSRRGASYYNCRP 121
             G+  D        G EFEMDSEINRRILAT RYISYGALR NT+PCSRRGASYYNCR 
Sbjct: 63  ALGDGGDLFYGGGEMGEEFEMDSEINRRILATRRYISYGALRRNTIPCSRRGASYYNCRR 122

Query: 122 GAQANPYSRGCSAITRCR 127
           GAQANPYSRGCSAITRCR
Sbjct: 123 GAQANPYSRGCSAITRCR 136

[Close]

BLAST of Clc06G05420 vs. TAIR 10
Match: AT1G02900.1 (rapid alkalinization factor 1 )

HSP 1 Score: 113.6 bits (283), Expect = 1.2e-25
Identity = 66/124 (53.23%), Postives = 76/124 (61.29%), Query Frame = 0


Query: 8   SLLAAFAIFAAYFLISSATAVDFSGDHNLLFVPTK----SECRGSIAECFLAGNDDDSAF 67
           +L     I   + + S      F+ D   +   T     S C GSIAEC  A        
Sbjct: 6   TLFLTLTILVVFIISSPPVQAGFANDLGGVAWATTGDNGSGCHGSIAECIGA-------- 65

Query: 68  GMEFEMDSEINRRILATTRYISYGALRSNTVPCSRRGASYYNCRPGAQANPYSRGCSAIT 127
             E EMDSEINRRILATT+YISY +L+ N+VPCSRRGASYYNC+ GAQANPYSRGCS I 
Sbjct: 66  -EEEEMDSEINRRILATTKYISYQSLKRNSVPCSRRGASYYNCQNGAQANPYSRGCSKIA 120

[Close]

BLAST of Clc06G05420 vs. TAIR 10
Match: AT3G05490.1 (ralf-like 22 )

HSP 1 Score: 113.2 bits (282), Expect = 1.5e-25
Identity = 68/123 (55.28%), Postives = 81/123 (65.85%), Query Frame = 0


Query: 11  AAFAIFAAYFLISSATAVDFSGD--HNLLFVPTKSE-----CRGSIAECFLAGNDDDSAF 70
           A +A+ A   ++ S  AV+ +GD   +L FV   S      C GSIAEC         A 
Sbjct: 6   AIYAVIAILAIVIS--AVESTGDFGDSLDFVRAGSSSLFSGCTGSIAECI--------AE 65

Query: 71  GMEFEMDSEINRRILATTRYISYGALRSNTVPCSRRGASYYNCRPGAQANPYSRGCSAIT 127
             E E DS+I+RRILA  +YISYGA+R N+VPCSRRGASYYNC+ GAQANPYSRGCS IT
Sbjct: 66  EEEMEFDSDISRRILAQKKYISYGAMRRNSVPCSRRGASYYNCQRGAQANPYSRGCSTIT 118

[Close]

BLAST of Clc06G05420 vs. TAIR 10
Match: AT2G33775.1 (ralf-like 19 )

HSP 1 Score: 85.1 bits (209), Expect = 4.4e-17
Identity = 41/62 (66.13%), Postives = 47/62 (75.81%), Query Frame = 0


Query: 65  MEFEMDSEINRRILATTR-YISYGALRSNTVPCSRRGASYYNCRPGAQANPYSRGCSAIT 124
           +++ MDSE NRR LA  R YISYGALR N VPCSRRG SYY+C+   +ANPY RGCS IT
Sbjct: 44  LDYLMDSETNRRQLAARRSYISYGALRKNNVPCSRRGRSYYDCKKRKRANPYRRGCSVIT 103

Query: 125 RC 126
            C
Sbjct: 104 HC 105

The following BLAST results are available for this feature:

BLAST of Clc06G05420 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038875155.1	4.8e-58	92.91	protein RALF-like 33 [Benincasa hispida]	[more]
KAG6575064.1	1.5e-56	88.19	Protein RALF-like 33, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023547686.1	3.4e-56	87.40	protein RALF-like 33 [Cucurbita pepo subsp. pepo]	[more]
XP_022959207.1	5.9e-56	87.40	protein RALF-like 33 [Cucurbita moschata]	[more]
XP_023006467.1	1.0e-55	87.40	protein RALF-like 33 [Cucurbita maxima]	[more]

BLAST of Clc06G05420 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L9P8	1.5e-33	68.14	Protein RALF-like 33 OS=Arabidopsis thaliana OX=3702 GN=RALFL33 PE=2 SV=1	[more]
Q9LUS7	2.5e-33	59.42	Rapid alkalinization factor 23 OS=Arabidopsis thaliana OX=3702 GN=RALF23 PE=1 SV...	[more]
Q945T0	1.1e-28	64.55	Rapid alkalinization factor OS=Nicotiana tabacum OX=4097 GN=RALF PE=1 SV=1	[more]
Q9SRY3	1.6e-24	53.23	Protein RALF-like 1 OS=Arabidopsis thaliana OX=3702 GN=RALF1 PE=1 SV=1	[more]
Q9MA62	2.1e-24	55.28	Protein RALF-like 22 OS=Arabidopsis thaliana OX=3702 GN=RALFL22 PE=3 SV=1	[more]

BLAST of Clc06G05420 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H3W7	2.8e-56	87.40	protein RALF-like 33 OS=Cucurbita moschata OX=3662 GN=LOC111460267 PE=3 SV=1	[more]
A0A6J1KVY0	4.9e-56	87.40	protein RALF-like 33 OS=Cucurbita maxima OX=3661 GN=LOC111499183 PE=3 SV=1	[more]
A0A6J1C9N4	1.2e-51	85.04	protein RALF-like 33 OS=Momordica charantia OX=3673 GN=LOC111009595 PE=3 SV=1	[more]
A0A6J1KG89	1.2e-49	80.31	protein RALF-like 33 OS=Cucurbita maxima OX=3661 GN=LOC111494831 PE=3 SV=1	[more]
A0A6J1EV64	2.0e-49	80.31	protein RALF-like 33 OS=Cucurbita moschata OX=3662 GN=LOC111436882 PE=3 SV=1	[more]

BLAST of Clc06G05420 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G15800.1	1.0e-34	68.14	ralf-like 33	[more]
AT3G16570.1	1.8e-34	59.42	rapid alkalinization factor 23	[more]
AT1G02900.1	1.2e-25	53.23	rapid alkalinization factor 1	[more]
AT3G05490.1	1.5e-25	55.28	ralf-like 22	[more]
AT2G33775.1	4.4e-17	66.13	ralf-like 19	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008801	Rapid ALkalinization Factor	PFAM	PF05498	RALF	coord: 66..126 e-value: 9.0E-31 score: 106.6
None	No IPR available	PANTHER	PTHR33136:SF50	PROTEIN RALF-LIKE 33	coord: 7..127
None	No IPR available	PANTHER	PTHR33136	RAPID ALKALINIZATION FACTOR-LIKE	coord: 7..127

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc06G05420.1	Clc06G05420.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019722	calcium-mediated signaling
cellular_component	GO:0005576	extracellular region