Clc06G05030 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc06G05030
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	GATA transcription factor 16-like
Location	ClcChr06: 5193662 .. 5194291 (-)
RNA-Seq Expression	Clc06G05030
Synteny	Clc06G05030

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGGATCCGATCGAGGAAGTGAGTGATCGCGATTCGCGAGTCTTTTATTGAGTTGATCTTATTACTGATTTTGAAATTATTGAGTACTGATTCGATTGTACTGTGCTGGAATATAGGGATCGGAGTTCAAGGACGCCGGAAAGTCTTGGCCGGCGGAAAATGAGCAGAATAAGAAGGCCTGCGCTGATTGCGGTACGACGAAGACTCCTCTCTGGCGTGGAGGTCCGGCTGGCCCTAAGGTGATTTGTTCTTCATCTCCATCTCTACACTCGATCGAATATTCGGTTTGATTCTCCATTTCTGTTGCTCGATTTTAACGATCATGAGCTAATTTTTTTATTATTTTTTTTCAAGTCTCTTTGCAATGCGTGTGGGATCAGAAGCAGGAAGAAGAGAAGATCGCTTCTAGGTTTAAACAGAGGAGGGGAAGTGGAGAGGAAAAACAAGGGAAGTAGTAACAGAAGCAACAATGGCGGTGGAAATCAGGCAAAAATTGGGGGAGAGAGCTTGAAATGGAGATCAATGGCGTTTGGTAGAAAAGAATTAATGCAAAGGAGACAGTTGGGAGAGGAAGAACAAGCTGCTGTTTTGTTAATGGCTCTTTCTTATGGATCTGTATATGCTTGA

mRNA sequence

ATGATGGATCCGATCGAGGAAGGATCGGAGTTCAAGGACGCCGGAAAGTCTTGGCCGGCGGAAAATGAGCAGAATAAGAAGGCCTGCGCTGATTGCGGTACGACGAAGACTCCTCTCTGGCGTGGAGGTCCGGCTGGCCCTAAGTCTCTTTGCAATGCGTGTGGGATCAGAAGCAGGAAGAAGAGAAGATCGCTTCTAGGTTTAAACAGAGGAGGGGAAGTGGAGAGGAAAAACAAGGGAAGTAGTAACAGAAGCAACAATGGCGGTGGAAATCAGGCAAAAATTGGGGGAGAGAGCTTGAAATGGAGATCAATGGCGTTTGGTAGAAAAGAATTAATGCAAAGGAGACAGTTGGGAGAGGAAGAACAAGCTGCTGTTTTGTTAATGGCTCTTTCTTATGGATCTGTATATGCTTGA

Coding sequence (CDS)

ATGATGGATCCGATCGAGGAAGGATCGGAGTTCAAGGACGCCGGAAAGTCTTGGCCGGCGGAAAATGAGCAGAATAAGAAGGCCTGCGCTGATTGCGGTACGACGAAGACTCCTCTCTGGCGTGGAGGTCCGGCTGGCCCTAAGTCTCTTTGCAATGCGTGTGGGATCAGAAGCAGGAAGAAGAGAAGATCGCTTCTAGGTTTAAACAGAGGAGGGGAAGTGGAGAGGAAAAACAAGGGAAGTAGTAACAGAAGCAACAATGGCGGTGGAAATCAGGCAAAAATTGGGGGAGAGAGCTTGAAATGGAGATCAATGGCGTTTGGTAGAAAAGAATTAATGCAAAGGAGACAGTTGGGAGAGGAAGAACAAGCTGCTGTTTTGTTAATGGCTCTTTCTTATGGATCTGTATATGCTTGA

Protein sequence

MMDPIEEGSEFKDAGKSWPAENEQNKKACADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGGEVERKNKGSSNRSNNGGGNQAKIGGESLKWRSMAFGRKELMQRRQLGEEEQAAVLLMALSYGSVYA

Homology

[Close]

BLAST of Clc06G05030 vs. NCBI nr
Match: XP_038875288.1 (GATA transcription factor 16-like [Benincasa hispida])

HSP 1 Score: 255.4 bits (651), Expect = 2.9e-64
Identity = 131/138 (94.93%), Postives = 133/138 (96.38%), Query Frame = 0


Query: 1   MMDPIEEGSEFKDAGKSWPAENEQNKKACADCGTTKTPLWRGGPAGPKSLCNACGIRSRK 60
           MMDPIEEGSEFKDAGKS PAE+EQNKK CADCGTTKTPLWRGGPAGPKSLCNACGIRSRK
Sbjct: 1   MMDPIEEGSEFKDAGKSSPAESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRK 60

Query: 61  KRRSLLGLNRGGEVERKNKGSSNRSNNGGGNQAKIGGESLKWRSMAFGRKELMQRRQLGE 120
           KRRSLLGLNRGGEVERK+KGSSNRSNNGGGNQ KIG ESLKWRSMAFGR ELMQRRQLGE
Sbjct: 61  KRRSLLGLNRGGEVERKSKGSSNRSNNGGGNQTKIGRESLKWRSMAFGRNELMQRRQLGE 120

Query: 121 EEQAAVLLMALSYGSVYA 139
           EEQAAVLLMALSYGSVYA
Sbjct: 121 EEQAAVLLMALSYGSVYA 138

[Close]

BLAST of Clc06G05030 vs. NCBI nr
Match: XP_004150081.1 (GATA transcription factor 16 [Cucumis sativus] >KGN47402.1 hypothetical protein Csa_022928 [Cucumis sativus])

HSP 1 Score: 253.4 bits (646), Expect = 1.1e-63
Identity = 131/139 (94.24%), Postives = 134/139 (96.40%), Query Frame = 0


Query: 1   MMDPIEEGSEFKDAGKSWPAENEQNKKACADCGTTKTPLWRGGPAGPKSLCNACGIRSRK 60
           MMDPIEEGSEFKDAGK+ P E+EQNKK CADCGTTKTPLWRGGPAGPKSLCNACGIRSRK
Sbjct: 1   MMDPIEEGSEFKDAGKTSPMESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRK 60

Query: 61  KRRSLLGLNRGGEVERKNKGSS-NRSNNGGGNQAKIGGESLKWRSMAFGRKELMQRRQLG 120
           KRRSLLGLNRGGEVERKNKGSS NR+NNGGGNQ KIGGESLKWRSMAFGRKELMQRRQLG
Sbjct: 61  KRRSLLGLNRGGEVERKNKGSSNNRNNNGGGNQGKIGGESLKWRSMAFGRKELMQRRQLG 120

Query: 121 EEEQAAVLLMALSYGSVYA 139
           EEEQAAVLLMALSYGSVYA
Sbjct: 121 EEEQAAVLLMALSYGSVYA 139

[Close]

BLAST of Clc06G05030 vs. NCBI nr
Match: XP_008458384.1 (PREDICTED: GATA transcription factor 16-like isoform X1 [Cucumis melo] >TYK02936.1 GATA transcription factor 16-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 251.1 bits (640), Expect = 5.4e-63
Identity = 130/139 (93.53%), Postives = 133/139 (95.68%), Query Frame = 0


Query: 1   MMDPIEEGSEFKDAGKSWPAENEQNKKACADCGTTKTPLWRGGPAGPKSLCNACGIRSRK 60
           MMDPIEEGSEFKDAGK+ P E+EQNKK CADCGTTKTPLWRGGPAGPKSLCNACGIRSRK
Sbjct: 1   MMDPIEEGSEFKDAGKTSPMESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRK 60

Query: 61  KRRSLLGLNRGGEVERKNKGSS-NRSNNGGGNQAKIGGESLKWRSMAFGRKELMQRRQLG 120
           KRRSLLGLNRGGEVERKNKGSS NR+NNGGGNQ KIGGESLKWRSMAFGRKELMQR QLG
Sbjct: 61  KRRSLLGLNRGGEVERKNKGSSNNRNNNGGGNQGKIGGESLKWRSMAFGRKELMQRTQLG 120

Query: 121 EEEQAAVLLMALSYGSVYA 139
           EEEQAAVLLMALSYGSVYA
Sbjct: 121 EEEQAAVLLMALSYGSVYA 139

[Close]

BLAST of Clc06G05030 vs. NCBI nr
Match: XP_022138518.1 (GATA transcription factor 16-like [Momordica charantia])

HSP 1 Score: 244.2 bits (622), Expect = 6.6e-61
Identity = 126/142 (88.73%), Postives = 134/142 (94.37%), Query Frame = 0


Query: 1   MMDPIEEGSEFKDAG----KSWPAENEQNKKACADCGTTKTPLWRGGPAGPKSLCNACGI 60
           MMDPIEEGSEFKDAG    K+ PAE+EQN+K CADCGTTKTPLWRGGPAGPKSLCNACGI
Sbjct: 1   MMDPIEEGSEFKDAGRSPRKASPAESEQNRKTCADCGTTKTPLWRGGPAGPKSLCNACGI 60

Query: 61  RSRKKRRSLLGLNRGGEVERKNKGSSNRSNNGGGNQAKIGGESLKWRSMAFGRKELMQRR 120
           RSRKKRRSLLGLNRG EVERKNKGSSNR++NGGGNQAKIGG++LKWR MAFGR+ELMQRR
Sbjct: 61  RSRKKRRSLLGLNRGSEVERKNKGSSNRTSNGGGNQAKIGGDNLKWRLMAFGREELMQRR 120

Query: 121 QLGEEEQAAVLLMALSYGSVYA 139
           QLGEEEQAAVLLMALSYGSVYA
Sbjct: 121 QLGEEEQAAVLLMALSYGSVYA 142

[Close]

BLAST of Clc06G05030 vs. NCBI nr
Match: XP_023548663.1 (GATA transcription factor 16-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 239.2 bits (609), Expect = 2.1e-59
Identity = 124/142 (87.32%), Postives = 132/142 (92.96%), Query Frame = 0


Query: 1   MMDPIEEGSEFKDAGK----SWPAENEQNKKACADCGTTKTPLWRGGPAGPKSLCNACGI 60
           MMDPIEEGSEFKDA      S PAE+EQNKK CADCGTTKTPLWRGGPAGPKSLCNACGI
Sbjct: 1   MMDPIEEGSEFKDAENSPRMSSPAESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGI 60

Query: 61  RSRKKRRSLLGLNRGGEVERKNKGSSNRSNNGGGNQAKIGGESLKWRSMAFGRKELMQRR 120
           RSRKKRRSLLGLNRG EVERK+KGSSNR++NGGGNQAK+GG++LKWRS AFGRK+LMQRR
Sbjct: 61  RSRKKRRSLLGLNRGSEVERKSKGSSNRNSNGGGNQAKLGGDNLKWRSTAFGRKDLMQRR 120

Query: 121 QLGEEEQAAVLLMALSYGSVYA 139
           QLGEEEQAAVLLMALSYGSVYA
Sbjct: 121 QLGEEEQAAVLLMALSYGSVYA 142

[Close]

BLAST of Clc06G05030 vs. ExPASy Swiss-Prot
Match: Q9FJ10 (GATA transcription factor 16 OS=Arabidopsis thaliana OX=3702 GN=GATA16 PE=2 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 9.3e-26
Identity = 73/117 (62.39%), Postives = 84/117 (71.79%), Query Frame = 0


Query: 26  KKACADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGGEVERKNKGSSNRS 85
           KK CADCGT+KTPLWRGGP GPKSLCNACGIR+RKKRR       G E  +K K    +S
Sbjct: 35  KKTCADCGTSKTPLWRGGPVGPKSLCNACGIRNRKKRRG------GTEDNKKLK----KS 94

Query: 86  NNGGGNQAKIGGESLKWRSMAFGRKEL----MQRRQLGEEEQAAVLLMALSYGSVYA 139
           ++GGGN+    GESLK   M  G ++      QR++LGEEEQAAVLLMALSYGSVYA
Sbjct: 95  SSGGGNRK--FGESLKQSLMDLGIRKRSTVEKQRQKLGEEEQAAVLLMALSYGSVYA 139

[Close]

BLAST of Clc06G05030 vs. ExPASy Swiss-Prot
Match: Q8LG10 (GATA transcription factor 15 OS=Arabidopsis thaliana OX=3702 GN=GATA15 PE=2 SV=2)

HSP 1 Score: 112.5 bits (280), Expect = 3.9e-24
Identity = 81/146 (55.48%), Postives = 94/146 (64.38%), Query Frame = 0


Query: 2   MDPIEEGSEFKDAGKSWPAENEQNKKACADCGTTKTPLWRGGPAGPKSLCNACGIRSRKK 61
           +D IEE S    +  +    NE  KK+CA CGT+KTPLWRGGPAGPKSLCNACGIR+RKK
Sbjct: 21  VDAIEEHS---SSSSNEAISNE--KKSCAICGTSKTPLWRGGPAGPKSLCNACGIRNRKK 80

Query: 62  RRSLLGLNRGGEVERKNKGSSNRSNNGGGNQAKIGGESLKWRSMAFGRKELMQ------- 121
           RR+L+  NR    E K K S NR+           G+SLK R M  GR+ +MQ       
Sbjct: 81  RRTLIS-NRS---EDKKKKSHNRNPK--------FGDSLKQRLMELGREVMMQRSTAENQ 140

Query: 122 -RRQLGEEEQAAVLLMALSY-GSVYA 139
            R +LGEEEQAAVLLMALSY  SVYA
Sbjct: 141 RRNKLGEEEQAAVLLMALSYASSVYA 149

[Close]

BLAST of Clc06G05030 vs. ExPASy Swiss-Prot
Match: Q9LIB5 (GATA transcription factor 17 OS=Arabidopsis thaliana OX=3702 GN=GATA17 PE=2 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 5.5e-18
Identity = 65/166 (39.16%), Postives = 84/166 (50.60%), Query Frame = 0


Query: 14  AGKSWPAENEQNKKACADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGGE 73
           +G    + +   K+ C DCGT +TPLWRGGPAGPKSLCNACGI+SRKKR++ LG+    E
Sbjct: 29  SGSGGGSSSGDTKRTCVDCGTIRTPLWRGGPAGPKSLCNACGIKSRKKRQAALGMR--SE 88

Query: 74  VERKN-----------------------------------------KGSSNRSNNGGGNQ 133
            ++KN                                         + SS+ SN G    
Sbjct: 89  EKKKNRKSNCNNDLNLDHRNAKKYKINIVDDGKIDIDDDPKICNNKRSSSSSSNKGVSKF 148

Query: 134 AKIGGESLKWRSMAFGRKELMQRRQLGEEEQAAVLLMALSYGSVYA 139
             +G +    +  A  +K L   R+LGEEE+AAVLLMALS  SVYA
Sbjct: 149 LDLGFKVPVMKRSAVEKKRLW--RKLGEEERAAVLLMALSCSSVYA 190

[Close]

BLAST of Clc06G05030 vs. ExPASy Swiss-Prot
Match: Q8LC59 (GATA transcription factor 23 OS=Arabidopsis thaliana OX=3702 GN=GATA23 PE=2 SV=2)

HSP 1 Score: 84.3 bits (207), Expect = 1.1e-15
Identity = 52/119 (43.70%), Postives = 70/119 (58.82%), Query Frame = 0


Query: 21  ENEQNKKACADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRS-LLGLNRGGEVERKNK 80
           E +   + C++C TTKTP+WRGGP GPKSLCNACGIR RK+RRS LLG++    + R +K
Sbjct: 20  EEKGTIRCCSECKTTKTPMWRGGPTGPKSLCNACGIRHRKQRRSELLGIH----IIRSHK 79

Query: 81  GSSNRSNNGGGNQAKIGGESLKWRSMAFGRKELMQRRQLGEEEQAAVLLMALSYGSVYA 139
                          +  + +   S + G   + +RR L EEEQAA+ L+ LS  SV A
Sbjct: 80  --------------SLASKKINLLSSSHGGVAVKKRRSLKEEEQAALCLLLLSCSSVLA 120

[Close]

BLAST of Clc06G05030 vs. ExPASy Swiss-Prot
Match: Q6YW48 (Protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1 OS=Oryza sativa subsp. japonica OX=39947 GN=CGA1 PE=2 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 2.6e-12
Identity = 31/46 (67.39%), Postives = 35/46 (76.09%), Query Frame = 0


Query: 27  KACADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGG 73
           + C+DC TTKTPLWR GP GPKSLCNACGIR RK RR++     GG
Sbjct: 176 RVCSDCNTTKTPLWRSGPCGPKSLCNACGIRQRKARRAMAAAANGG 221

[Close]

BLAST of Clc06G05030 vs. ExPASy TrEMBL
Match: A0A0A0KG76 (GATA-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G312540 PE=4 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 5.3e-64
Identity = 131/139 (94.24%), Postives = 134/139 (96.40%), Query Frame = 0


Query: 1   MMDPIEEGSEFKDAGKSWPAENEQNKKACADCGTTKTPLWRGGPAGPKSLCNACGIRSRK 60
           MMDPIEEGSEFKDAGK+ P E+EQNKK CADCGTTKTPLWRGGPAGPKSLCNACGIRSRK
Sbjct: 1   MMDPIEEGSEFKDAGKTSPMESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRK 60

Query: 61  KRRSLLGLNRGGEVERKNKGSS-NRSNNGGGNQAKIGGESLKWRSMAFGRKELMQRRQLG 120
           KRRSLLGLNRGGEVERKNKGSS NR+NNGGGNQ KIGGESLKWRSMAFGRKELMQRRQLG
Sbjct: 61  KRRSLLGLNRGGEVERKNKGSSNNRNNNGGGNQGKIGGESLKWRSMAFGRKELMQRRQLG 120

Query: 121 EEEQAAVLLMALSYGSVYA 139
           EEEQAAVLLMALSYGSVYA
Sbjct: 121 EEEQAAVLLMALSYGSVYA 139

[Close]

BLAST of Clc06G05030 vs. ExPASy TrEMBL
Match: A0A5D3BXI1 (GATA transcription factor 16-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46G00160 PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 2.6e-63
Identity = 130/139 (93.53%), Postives = 133/139 (95.68%), Query Frame = 0


Query: 1   MMDPIEEGSEFKDAGKSWPAENEQNKKACADCGTTKTPLWRGGPAGPKSLCNACGIRSRK 60
           MMDPIEEGSEFKDAGK+ P E+EQNKK CADCGTTKTPLWRGGPAGPKSLCNACGIRSRK
Sbjct: 1   MMDPIEEGSEFKDAGKTSPMESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRK 60

Query: 61  KRRSLLGLNRGGEVERKNKGSS-NRSNNGGGNQAKIGGESLKWRSMAFGRKELMQRRQLG 120
           KRRSLLGLNRGGEVERKNKGSS NR+NNGGGNQ KIGGESLKWRSMAFGRKELMQR QLG
Sbjct: 61  KRRSLLGLNRGGEVERKNKGSSNNRNNNGGGNQGKIGGESLKWRSMAFGRKELMQRTQLG 120

Query: 121 EEEQAAVLLMALSYGSVYA 139
           EEEQAAVLLMALSYGSVYA
Sbjct: 121 EEEQAAVLLMALSYGSVYA 139

[Close]

BLAST of Clc06G05030 vs. ExPASy TrEMBL
Match: A0A1S3C8C2 (GATA transcription factor 16-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497809 PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 2.6e-63
Identity = 130/139 (93.53%), Postives = 133/139 (95.68%), Query Frame = 0


Query: 1   MMDPIEEGSEFKDAGKSWPAENEQNKKACADCGTTKTPLWRGGPAGPKSLCNACGIRSRK 60
           MMDPIEEGSEFKDAGK+ P E+EQNKK CADCGTTKTPLWRGGPAGPKSLCNACGIRSRK
Sbjct: 1   MMDPIEEGSEFKDAGKTSPMESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRK 60

Query: 61  KRRSLLGLNRGGEVERKNKGSS-NRSNNGGGNQAKIGGESLKWRSMAFGRKELMQRRQLG 120
           KRRSLLGLNRGGEVERKNKGSS NR+NNGGGNQ KIGGESLKWRSMAFGRKELMQR QLG
Sbjct: 61  KRRSLLGLNRGGEVERKNKGSSNNRNNNGGGNQGKIGGESLKWRSMAFGRKELMQRTQLG 120

Query: 121 EEEQAAVLLMALSYGSVYA 139
           EEEQAAVLLMALSYGSVYA
Sbjct: 121 EEEQAAVLLMALSYGSVYA 139

[Close]

BLAST of Clc06G05030 vs. ExPASy TrEMBL
Match: A0A6J1CD73 (GATA transcription factor 16-like OS=Momordica charantia OX=3673 GN=LOC111009666 PE=4 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 3.2e-61
Identity = 126/142 (88.73%), Postives = 134/142 (94.37%), Query Frame = 0


Query: 1   MMDPIEEGSEFKDAG----KSWPAENEQNKKACADCGTTKTPLWRGGPAGPKSLCNACGI 60
           MMDPIEEGSEFKDAG    K+ PAE+EQN+K CADCGTTKTPLWRGGPAGPKSLCNACGI
Sbjct: 1   MMDPIEEGSEFKDAGRSPRKASPAESEQNRKTCADCGTTKTPLWRGGPAGPKSLCNACGI 60

Query: 61  RSRKKRRSLLGLNRGGEVERKNKGSSNRSNNGGGNQAKIGGESLKWRSMAFGRKELMQRR 120
           RSRKKRRSLLGLNRG EVERKNKGSSNR++NGGGNQAKIGG++LKWR MAFGR+ELMQRR
Sbjct: 61  RSRKKRRSLLGLNRGSEVERKNKGSSNRTSNGGGNQAKIGGDNLKWRLMAFGREELMQRR 120

Query: 121 QLGEEEQAAVLLMALSYGSVYA 139
           QLGEEEQAAVLLMALSYGSVYA
Sbjct: 121 QLGEEEQAAVLLMALSYGSVYA 142

[Close]

BLAST of Clc06G05030 vs. ExPASy TrEMBL
Match: A0A6J1KXU7 (GATA transcription factor 16-like OS=Cucurbita maxima OX=3661 GN=LOC111499182 PE=4 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 3.0e-59
Identity = 123/142 (86.62%), Postives = 131/142 (92.25%), Query Frame = 0


Query: 1   MMDPIEEGSEFKDAGK----SWPAENEQNKKACADCGTTKTPLWRGGPAGPKSLCNACGI 60
           MMDP+EEGSEFKDA      S PAE+EQNKK CADCGTTKTPLWRGGPAGPKSLCNACGI
Sbjct: 1   MMDPMEEGSEFKDAENSSRMSSPAESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGI 60

Query: 61  RSRKKRRSLLGLNRGGEVERKNKGSSNRSNNGGGNQAKIGGESLKWRSMAFGRKELMQRR 120
           RSRKKRRSLLGLNRG E ERK+KGSSNR++NGGGNQAK+GG+SLKWRS AFGRK+LMQRR
Sbjct: 61  RSRKKRRSLLGLNRGSEAERKSKGSSNRNSNGGGNQAKLGGDSLKWRSTAFGRKDLMQRR 120

Query: 121 QLGEEEQAAVLLMALSYGSVYA 139
           QLGEEEQAAVLLMALSYGSVYA
Sbjct: 121 QLGEEEQAAVLLMALSYGSVYA 142

[Close]

BLAST of Clc06G05030 vs. TAIR 10
Match: AT5G49300.1 (GATA transcription factor 16 )

HSP 1 Score: 117.9 bits (294), Expect = 6.6e-27
Identity = 73/117 (62.39%), Postives = 84/117 (71.79%), Query Frame = 0


Query: 26  KKACADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGGEVERKNKGSSNRS 85
           KK CADCGT+KTPLWRGGP GPKSLCNACGIR+RKKRR       G E  +K K    +S
Sbjct: 35  KKTCADCGTSKTPLWRGGPVGPKSLCNACGIRNRKKRRG------GTEDNKKLK----KS 94

Query: 86  NNGGGNQAKIGGESLKWRSMAFGRKEL----MQRRQLGEEEQAAVLLMALSYGSVYA 139
           ++GGGN+    GESLK   M  G ++      QR++LGEEEQAAVLLMALSYGSVYA
Sbjct: 95  SSGGGNRK--FGESLKQSLMDLGIRKRSTVEKQRQKLGEEEQAAVLLMALSYGSVYA 139

[Close]

BLAST of Clc06G05030 vs. TAIR 10
Match: AT3G06740.1 (GATA transcription factor 15 )

HSP 1 Score: 112.5 bits (280), Expect = 2.8e-25
Identity = 81/146 (55.48%), Postives = 94/146 (64.38%), Query Frame = 0


Query: 2   MDPIEEGSEFKDAGKSWPAENEQNKKACADCGTTKTPLWRGGPAGPKSLCNACGIRSRKK 61
           +D IEE S    +  +    NE  KK+CA CGT+KTPLWRGGPAGPKSLCNACGIR+RKK
Sbjct: 21  VDAIEEHS---SSSSNEAISNE--KKSCAICGTSKTPLWRGGPAGPKSLCNACGIRNRKK 80

Query: 62  RRSLLGLNRGGEVERKNKGSSNRSNNGGGNQAKIGGESLKWRSMAFGRKELMQ------- 121
           RR+L+  NR    E K K S NR+           G+SLK R M  GR+ +MQ       
Sbjct: 81  RRTLIS-NRS---EDKKKKSHNRNPK--------FGDSLKQRLMELGREVMMQRSTAENQ 140

Query: 122 -RRQLGEEEQAAVLLMALSY-GSVYA 139
            R +LGEEEQAAVLLMALSY  SVYA
Sbjct: 141 RRNKLGEEEQAAVLLMALSYASSVYA 149

[Close]

BLAST of Clc06G05030 vs. TAIR 10
Match: AT3G16870.1 (GATA transcription factor 17 )

HSP 1 Score: 92.0 bits (227), Expect = 3.9e-19
Identity = 65/166 (39.16%), Postives = 84/166 (50.60%), Query Frame = 0


Query: 14  AGKSWPAENEQNKKACADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGGE 73
           +G    + +   K+ C DCGT +TPLWRGGPAGPKSLCNACGI+SRKKR++ LG+    E
Sbjct: 29  SGSGGGSSSGDTKRTCVDCGTIRTPLWRGGPAGPKSLCNACGIKSRKKRQAALGMR--SE 88

Query: 74  VERKN-----------------------------------------KGSSNRSNNGGGNQ 133
            ++KN                                         + SS+ SN G    
Sbjct: 89  EKKKNRKSNCNNDLNLDHRNAKKYKINIVDDGKIDIDDDPKICNNKRSSSSSSNKGVSKF 148

Query: 134 AKIGGESLKWRSMAFGRKELMQRRQLGEEEQAAVLLMALSYGSVYA 139
             +G +    +  A  +K L   R+LGEEE+AAVLLMALS  SVYA
Sbjct: 149 LDLGFKVPVMKRSAVEKKRLW--RKLGEEERAAVLLMALSCSSVYA 190

[Close]

BLAST of Clc06G05030 vs. TAIR 10
Match: AT5G26930.1 (GATA transcription factor 23 )

HSP 1 Score: 84.3 bits (207), Expect = 8.1e-17
Identity = 52/119 (43.70%), Postives = 70/119 (58.82%), Query Frame = 0


Query: 21  ENEQNKKACADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRS-LLGLNRGGEVERKNK 80
           E +   + C++C TTKTP+WRGGP GPKSLCNACGIR RK+RRS LLG++    + R +K
Sbjct: 20  EEKGTIRCCSECKTTKTPMWRGGPTGPKSLCNACGIRHRKQRRSELLGIH----IIRSHK 79

Query: 81  GSSNRSNNGGGNQAKIGGESLKWRSMAFGRKELMQRRQLGEEEQAAVLLMALSYGSVYA 139
                          +  + +   S + G   + +RR L EEEQAA+ L+ LS  SV A
Sbjct: 80  --------------SLASKKINLLSSSHGGVAVKKRRSLKEEEQAALCLLLLSCSSVLA 120

[Close]

BLAST of Clc06G05030 vs. TAIR 10
Match: AT4G16141.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 82.0 bits (201), Expect = 4.0e-16
Identity = 68/187 (36.36%), Postives = 87/187 (46.52%), Query Frame = 0


Query: 7   EGSEFKDAGKSWPAENEQNKKACADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLL 66
           + S+  +   S        KK C DCGT++TPLWRGGPAGPKSLCNACGI+SRKKR++ L
Sbjct: 17  DSSDVDNGNCSSSGSGGDTKKTCVDCGTSRTPLWRGGPAGPKSLCNACGIKSRKKRQAAL 76

Query: 67  GLNRG----------------------------------------------GEVERKNK- 126
           G+ +                                               G V+ K K 
Sbjct: 77  GIRQDDIKIKSKSNNNLGLESRNVKTGKGEPVNVKIAKCEPGIVKIAKGEPGNVKNKIKR 136

Query: 127 --GSSNRSNNGGGNQAKIGGESLKWRSMAFGRK-ELMQR---------RQLGEEEQAAVL 135
              +S+ SNN   N  ++G      R + FG K   M+R         R+LGEEE+AAVL
Sbjct: 137 DPENSSSSNNNKKNVKRVG------RFLDFGFKVPAMKRSAVEKKRLWRKLGEEERAAVL 196

The following BLAST results are available for this feature:

BLAST of Clc06G05030 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038875288.1	2.9e-64	94.93	GATA transcription factor 16-like [Benincasa hispida]	[more]
XP_004150081.1	1.1e-63	94.24	GATA transcription factor 16 [Cucumis sativus] >KGN47402.1 hypothetical protein ...	[more]
XP_008458384.1	5.4e-63	93.53	PREDICTED: GATA transcription factor 16-like isoform X1 [Cucumis melo] >TYK02936...	[more]
XP_022138518.1	6.6e-61	88.73	GATA transcription factor 16-like [Momordica charantia]	[more]
XP_023548663.1	2.1e-59	87.32	GATA transcription factor 16-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Clc06G05030 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FJ10	9.3e-26	62.39	GATA transcription factor 16 OS=Arabidopsis thaliana OX=3702 GN=GATA16 PE=2 SV=1	[more]
Q8LG10	3.9e-24	55.48	GATA transcription factor 15 OS=Arabidopsis thaliana OX=3702 GN=GATA15 PE=2 SV=2	[more]
Q9LIB5	5.5e-18	39.16	GATA transcription factor 17 OS=Arabidopsis thaliana OX=3702 GN=GATA17 PE=2 SV=1	[more]
Q8LC59	1.1e-15	43.70	GATA transcription factor 23 OS=Arabidopsis thaliana OX=3702 GN=GATA23 PE=2 SV=2	[more]
Q6YW48	2.6e-12	67.39	Protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1 OS=Oryza sativa subsp. ...	[more]

BLAST of Clc06G05030 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KG76	5.3e-64	94.24	GATA-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G312540 P...	[more]
A0A5D3BXI1	2.6e-63	93.53	GATA transcription factor 16-like isoform X1 OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A1S3C8C2	2.6e-63	93.53	GATA transcription factor 16-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC10349...	[more]
A0A6J1CD73	3.2e-61	88.73	GATA transcription factor 16-like OS=Momordica charantia OX=3673 GN=LOC111009666...	[more]
A0A6J1KXU7	3.0e-59	86.62	GATA transcription factor 16-like OS=Cucurbita maxima OX=3661 GN=LOC111499182 PE...	[more]

BLAST of Clc06G05030 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G49300.1	6.6e-27	62.39	GATA transcription factor 16	[more]
AT3G06740.1	2.8e-25	55.48	GATA transcription factor 15	[more]
AT3G16870.1	3.9e-19	39.16	GATA transcription factor 17	[more]
AT5G26930.1	8.1e-17	43.70	GATA transcription factor 23	[more]
AT4G16141.1	4.0e-16	36.36	GATA type zinc finger transcription factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000679	Zinc finger, GATA-type	SMART	SM00401	GATA_3	coord: 23..81 e-value: 3.5E-13 score: 59.8
IPR000679	Zinc finger, GATA-type	PFAM	PF00320	GATA	coord: 29..63 e-value: 4.4E-17 score: 61.4
IPR000679	Zinc finger, GATA-type	PROSITE	PS00344	GATA_ZN_FINGER_1	coord: 29..54
IPR000679	Zinc finger, GATA-type	PROSITE	PS50114	GATA_ZN_FINGER_2	coord: 23..59 score: 12.47909
IPR000679	Zinc finger, GATA-type	CDD	cd00202	ZnF_GATA	coord: 28..79 e-value: 7.75602E-14 score: 59.6938
IPR013088	Zinc finger, NHR/GATA-type	GENE3D	3.30.50.10		coord: 23..92 e-value: 7.5E-17 score: 63.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..96
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 66..80
None	No IPR available	PANTHER	PTHR47172	OS01G0976800 PROTEIN	coord: 2..138
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 25..62

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc06G05030.1	Clc06G05030.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0008270	zinc ion binding