Clc06G04730 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc06G04730
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Unknown protein
Location	ClcChr06: 4907239 .. 4908200 (+)
RNA-Seq Expression	Clc06G04730
Synteny	Clc06G04730

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATATATATATATATATATATATATATATATCTGCATATCTGCAGTGTTAATAACAGTGGCCAGAATTTTCCCTTTATATATATGCTTCATTTTTCTCTTATTCATACCATATCCTTGATTACCAAACAAATAACAAGGTAATTTTTAACCAAATTCACTCCTAATTTTTTCCTTTTATTTTGATAAATCAAGCTTTGTTTTTGTTTTTGTAGGGATGATTATGATGAAGAGGGTTCTTCTTCTCTTTGCTGCCTTGTTGTTGCTCCTCATGGCAGACGCCGCGATGCACGACGTCGTCGACAAGAAGCATACACGTAAGCTAGCTCAAGGCTTCGGTGGCGGGAGAACCCCCGAAACGCGAGTGTTCTACGTTGAAAATAAGCCTCACCCTGATCATATTGCTGATGTTGCAAATGAGCCTGACCCTGATCATGCTGATGTTGCTAATGACGTTGGAGCTAACAAAAACAACACTGACGACGACGATGAAAATCTTGGTTATAAAAATTACGGCAAGGGTTCCGACACTGAAACTCACCGTTACTTCTCGAGCGATAAGCCATACAGACCCTAGAAAAGCTTTTAAAGATCATCATCATCCGTTGTCGTCACCGTCACCGTCGCCATCGTCTTATCAGGTAGTCAATTGTAAAGAAGAAAAAAATGAATGTGTTTTATTCTCTTGTAATAAAGTGGAATGTGCATGGAATGTTTGCTGAAGAGCCTAAGGTGAAAGAGATGGTTAGCTGAGGCATGCAAAGCTTTCGCATTTCACAGAGTTTGATGTTTATTGTGTGTTGTGAAAAATATTATGAATAATGTGGATGAAATTAAGATATATGTGTATCATAATTTTATGTTATGGTGTCATGTTATGATTTGGCTTTGTATTTATTCTATGAAACAGAAGATGCTTAATACTATATAAAGTTGGTGATGATCTTAATCTTCTTATTACTAAA

mRNA sequence

ATATATATATATATATATATATATATATATCTGCATATCTGCAGTGTTAATAACAGTGGCCAGAATTTTCCCTTTATATATATGCTTCATTTTTCTCTTATTCATACCATATCCTTGATTACCAAACAAATAACAAGGGATGATTATGATGAAGAGGGTTCTTCTTCTCTTTGCTGCCTTGTTGTTGCTCCTCATGGCAGACGCCGCGATGCACGACGTCGTCGACAAGAAGCATACACGTAAGCTAGCTCAAGGCTTCGGTGGCGGGAGAACCCCCGAAACGCGAGTGTTCTACGTTGAAAATAAGCCTCACCCTGATCATATTGCTGATGTTGCAAATGAGCCTGACCCTGATCATGCTGATGTTGCTAATGACGTTGGAGCTAACAAAAACAACACTGACGACGACGATGAAAATCTTGGTTATAAAAATTACGGCAAGGGTTCCGACACTGAAACTCACCGTTACTTCTCGAGCGATAAGCCATACAGACCCTAGAAAAGCTTTTAAAGATCATCATCATCCGTTGTCGTCACCGTCACCGTCGCCATCGTCTTATCAGGTAGTCAATTGTAAAGAAGAAAAAAATGAATGTGTTTTATTCTCTTGTAATAAAGTGGAATGTGCATGGAATGTTTGCTGAAGAGCCTAAGGTGAAAGAGATGGTTAGCTGAGGCATGCAAAGCTTTCGCATTTCACAGAGTTTGATGTTTATTGTGTGTTGTGAAAAATATTATGAATAATGTGGATGAAATTAAGATATATGTGTATCATAATTTTATGTTATGGTGTCATGTTATGATTTGGCTTTGTATTTATTCTATGAAACAGAAGATGCTTAATACTATATAAAGTTGGTGATGATCTTAATCTTCTTATTACTAAA

Coding sequence (CDS)

ATGATTATGATGAAGAGGGTTCTTCTTCTCTTTGCTGCCTTGTTGTTGCTCCTCATGGCAGACGCCGCGATGCACGACGTCGTCGACAAGAAGCATACACGTAAGCTAGCTCAAGGCTTCGGTGGCGGGAGAACCCCCGAAACGCGAGTGTTCTACGTTGAAAATAAGCCTCACCCTGATCATATTGCTGATGTTGCAAATGAGCCTGACCCTGATCATGCTGATGTTGCTAATGACGTTGGAGCTAACAAAAACAACACTGACGACGACGATGAAAATCTTGGTTATAAAAATTACGGCAAGGGTTCCGACACTGAAACTCACCGTTACTTCTCGAGCGATAAGCCATACAGACCCTAG

Protein sequence

MIMMKRVLLLFAALLLLLMADAAMHDVVDKKHTRKLAQGFGGGRTPETRVFYVENKPHPDHIADVANEPDPDHADVANDVGANKNNTDDDDENLGYKNYGKGSDTETHRYFSSDKPYRP

Homology

[Close]

BLAST of Clc06G04730 vs. NCBI nr
Match: KAG6575119.1 (hypothetical protein SDJN03_25758, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 122.5 bits (306), Expect = 2.5e-24
Identity = 71/117 (60.68%), Postives = 81/117 (69.23%), Query Frame = 0


Query: 3   MMKRVLLLFAALLLLLMADAAMHDVVDKKHTRKLAQGFGGGRTPETRVFYVENKPHPDHI 62
           MMK+VL+L    LLL+M DAAMH VV+KKH RKLA+  GG  TPET VF    +  P+ +
Sbjct: 1   MMKKVLVLLVVSLLLVMGDAAMHGVVEKKHARKLARSLGGQTTPETEVFSGVYEHGPEDV 60

Query: 63  ADVANEPDPDHADVANDVGANKNNTDDDDENLGYKNYGKGSDTETHRYFSSDKPYRP 120
             V        ADV  ++  N NN DDDDENLGYKNYGKGSDTETHRYFSSDKPY P
Sbjct: 61  EVVV------VADVVTNID-NNNNVDDDDENLGYKNYGKGSDTETHRYFSSDKPYEP 110

[Close]

BLAST of Clc06G04730 vs. NCBI nr
Match: KAG7013689.1 (hypothetical protein SDJN02_23856, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 122.5 bits (306), Expect = 2.5e-24
Identity = 71/117 (60.68%), Postives = 81/117 (69.23%), Query Frame = 0


Query: 3   MMKRVLLLFAALLLLLMADAAMHDVVDKKHTRKLAQGFGGGRTPETRVFYVENKPHPDHI 62
           MMK+VL+L    LLL+M DAAMH VV+KKH RKLA+  GG  TPET VF    +  P+ +
Sbjct: 21  MMKKVLVLLVVSLLLVMGDAAMHGVVEKKHARKLARSLGGQTTPETEVFSGVYEHGPEDV 80

Query: 63  ADVANEPDPDHADVANDVGANKNNTDDDDENLGYKNYGKGSDTETHRYFSSDKPYRP 120
             V        ADV  ++  N NN DDDDENLGYKNYGKGSDTETHRYFSSDKPY P
Sbjct: 81  EVVV------VADVVTNID-NNNNVDDDDENLGYKNYGKGSDTETHRYFSSDKPYEP 130

[Close]

BLAST of Clc06G04730 vs. NCBI nr
Match: TYK02960.1 (uncharacterized protein E5676_scaffold46G00430 [Cucumis melo var. makuwa])

HSP 1 Score: 120.2 bits (300), Expect = 1.2e-23
Identity = 77/121 (63.64%), Postives = 86/121 (71.07%), Query Frame = 0


Query: 3   MMKRVLLLFAALLLLLMADAAMHDVVDKKHTRKLAQGFGGGRTPETRVFYVENKPHPDHI 62
           MMKRVLLLFA LLLLLMADAAM +VV+KK  RKLAQG G  R P+  VF           
Sbjct: 1   MMKRVLLLFAVLLLLLMADAAMSNVVEKKGARKLAQGSGDRRIPKAEVF----------- 60

Query: 63  ADVANEPDPDHADVA-NDVGAN---KNNTDDDDENLGYKNYGKGSDTETHRYFSSDKPYR 120
            + ANEP+    DVA +DV AN    ++ +DDD NLGYKNYGKGSDTETHRYFSSDKPYR
Sbjct: 61  -NDANEPELKKTDVAPDDVVANNIDNDDNEDDDVNLGYKNYGKGSDTETHRYFSSDKPYR 109

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BLAST of Clc06G04730 vs. NCBI nr
Match: XP_004150985.1 (uncharacterized protein LOC101207042 [Cucumis sativus] >KGN47457.1 hypothetical protein Csa_021763 [Cucumis sativus])

HSP 1 Score: 119.0 bits (297), Expect = 2.8e-23
Identity = 79/123 (64.23%), Postives = 88/123 (71.54%), Query Frame = 0


Query: 1   MIMMKRVLLLFAALLLLLMADAAMHDVVDKKHTRKLAQGFGGGRTPETRVFYVENKPHPD 60
           MIMMKRVLLLFAALLLLLMADA    +V+KK  RKLAQGF   RTP+  VF         
Sbjct: 1   MIMMKRVLLLFAALLLLLMADAV---IVEKKGARKLAQGFSERRTPKAGVF--------- 60

Query: 61  HIADVANEPDPDHADVA-NDVGANKN---NTDDDDENLGYKNYGKGSDTETHRYFSSDKP 120
              + ANE D ++ DVA +DV AN N   + +DDD NLGYKNYGKGSDTETHRYFSSDKP
Sbjct: 61  ---NDANESDLENTDVAPDDVVANNNVNDDNEDDDANLGYKNYGKGSDTETHRYFSSDKP 108

[Close]

BLAST of Clc06G04730 vs. NCBI nr
Match: KAG6594018.1 (hypothetical protein SDJN03_13494, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026358.1 hypothetical protein SDJN02_12860, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 109.4 bits (272), Expect = 2.2e-20
Identity = 71/119 (59.66%), Postives = 77/119 (64.71%), Query Frame = 0


Query: 1   MIMMKRVLLLFAALLLLLMADAAMHDVVDKKHTRKLAQGFGGGRTPETRVFYVENKPHPD 60
           M MMKR LLLFA  LLL+  DA MH V+ KK  RKLAQ F  G+ P+T VF         
Sbjct: 1   MTMMKRTLLLFAVFLLLVFTDATMHSVIKKKDARKLAQSF-SGQIPKTGVF--------- 60

Query: 61  HIADVANEPDPDHADVANDVGANKNNTDDDDENLGYKNYGKGSDTETHRYFSSDKPYRP 120
               V    D D A    DVG N NN D+DDENLGYKNYGKGSDTETHRYFSS+KPYRP
Sbjct: 61  --GGVKYSEDADVAQA--DVGMN-NNEDEDDENLGYKNYGKGSDTETHRYFSSEKPYRP 104

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BLAST of Clc06G04730 vs. ExPASy TrEMBL
Match: A0A5D3BV16 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46G00430 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 6.0e-24
Identity = 77/121 (63.64%), Postives = 86/121 (71.07%), Query Frame = 0


Query: 3   MMKRVLLLFAALLLLLMADAAMHDVVDKKHTRKLAQGFGGGRTPETRVFYVENKPHPDHI 62
           MMKRVLLLFA LLLLLMADAAM +VV+KK  RKLAQG G  R P+  VF           
Sbjct: 1   MMKRVLLLFAVLLLLLMADAAMSNVVEKKGARKLAQGSGDRRIPKAEVF----------- 60

Query: 63  ADVANEPDPDHADVA-NDVGAN---KNNTDDDDENLGYKNYGKGSDTETHRYFSSDKPYR 120
            + ANEP+    DVA +DV AN    ++ +DDD NLGYKNYGKGSDTETHRYFSSDKPYR
Sbjct: 61  -NDANEPELKKTDVAPDDVVANNIDNDDNEDDDVNLGYKNYGKGSDTETHRYFSSDKPYR 109

[Close]

BLAST of Clc06G04730 vs. ExPASy TrEMBL
Match: A0A0A0KGD6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G327960 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.3e-23
Identity = 79/123 (64.23%), Postives = 88/123 (71.54%), Query Frame = 0


Query: 1   MIMMKRVLLLFAALLLLLMADAAMHDVVDKKHTRKLAQGFGGGRTPETRVFYVENKPHPD 60
           MIMMKRVLLLFAALLLLLMADA    +V+KK  RKLAQGF   RTP+  VF         
Sbjct: 1   MIMMKRVLLLFAALLLLLMADAV---IVEKKGARKLAQGFSERRTPKAGVF--------- 60

Query: 61  HIADVANEPDPDHADVA-NDVGANKN---NTDDDDENLGYKNYGKGSDTETHRYFSSDKP 120
              + ANE D ++ DVA +DV AN N   + +DDD NLGYKNYGKGSDTETHRYFSSDKP
Sbjct: 61  ---NDANESDLENTDVAPDDVVANNNVNDDNEDDDANLGYKNYGKGSDTETHRYFSSDKP 108

The following BLAST results are available for this feature:

BLAST of Clc06G04730 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6575119.1	2.5e-24	60.68	hypothetical protein SDJN03_25758, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7013689.1	2.5e-24	60.68	hypothetical protein SDJN02_23856, partial [Cucurbita argyrosperma subsp. argyro...	[more]
TYK02960.1	1.2e-23	63.64	uncharacterized protein E5676_scaffold46G00430 [Cucumis melo var. makuwa]	[more]
XP_004150985.1	2.8e-23	64.23	uncharacterized protein LOC101207042 [Cucumis sativus] >KGN47457.1 hypothetical ...	[more]
KAG6594018.1	2.2e-20	59.66	hypothetical protein SDJN03_13494, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Clc06G04730 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc06G04730 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BV16	6.0e-24	63.64	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KGD6	1.3e-23	64.23	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G327960 PE=4 SV=1	[more]

BLAST of Clc06G04730 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..119
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 84..119
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..77

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc06G04730.1	Clc06G04730.1	mRNA