Clc06G04210 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc06G04210
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	LINE-1 retrotransposable element ORF2 protein
Location	ClcChr06: 4376338 .. 4380308 (+)
RNA-Seq Expression	Clc06G04210
Synteny	Clc06G04210

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCTCTATCAAGATTGACGACCTTGATCCTTTCTTGGATGCAACCACTCTATTCGCCGAAATTGTGAACGACGAAATCTGCCTGAAAATCTCACCGTCGACGTTTTCGATAATTTCTCGCTACCAGCACCCTCTTTTCTTTGCAATGATGATTATGCCGCCACCATTTTTCGCTGAGTATTCCGTTGATCGGAATCACAATTCAAAGATTTCCCTATCGGCCTTCCACAATGCTATGTTGGAAGGCCAAAGCTTTTGTTCTTCAATGACCATCCATGTTCATGAACAAGAAAATAATATACACCTTATATTTGAGCCTTCAAGTTAGTATACATATGCGCGATACCCTTTCTCCTCTGTTTCTTCTCTTCAAAAATGAATAATCTTGGTTCTCAATGGACATTCTTTTTTTGTGTTTTTGTTTTTTCTATTTTCTTCATTTTTGTCATTGCTTGATTCTTTTATGCATGCTCAGAATTTTTTTTTAGAAAAAGATACGATAGAATATGGGGTCACTAGGTAAATTTTCGGGTATTCGAAATCAATTTTCTTGCAACTTTTTTAATTAAAAGCCCATCATATCAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACAAACATCATTCAAATACTTATATACCTCAATCTTGCTTGCTTTAGAATTTCTTGTGTTAATGATTGTATTTTGAATTTCGTCACATTTTAATTCATTTTTGTACTTTTACTAAATCTAAAATTAAGTTCATGTTTTTAGTTTGTTGATTATTATTTTTCTAAAAAGAAAATGACTCCATTAGCATTCTCATAATAAATTTTAGGAAAATATATCAACCATTTTCTCTTAGATCTAAATTATTATTATTATTATCATTTTAATCCATTTTGGTAAAAAAAAAAAAAAAAAAATGTCAAAGGTCAATTCATATGCAAATTATGATAATTATTGCTATCATTATATGACTTTCTACTTTTATTTTAAGGGCCTTCTGCACTACCATTGCATCATGAATTGACATTCCTGCCTATGGAAGACTGGTCGCTTGGCGAAGTTACCTTATTAAGTGGAAAAATTTTATCCATTGAGTCAGAAATGTTTAGCAATATTTTGACAACATTTTCTGTGTACAATGAAGCTGATTCAAGTAATGCAATTCTTCTTCTCTCATTTTTCATAAATTTTACTTTAAACAAAAAAAAGTGGTGTATATATGATCTTGCTAAAATCTTCTTTCATTTCTCACAGTTTTGATTACTTTAGTGGGTACACAAGCCACCTTCTCTGTCATTCCATTTGATCACGAGATAACTGTTACTGAAGAGGTATGTTTTGTGAACTTTGTGCAAATTAATTATTTTAATTATTTTAAATGAAATATATATATACACACATATTATAGTTATGTGTAGATAAGGTTGAAAAGTTGTCAAATCACTAATCAAAACATAAGCTTAAGTTGATATGAGTTGTGGCGAATTTAATATTATATCAATACTCTATCACTTCTATACCTTCCATTGTGTGTTTGAAAATTTGTTTGAACGGAAAAAAAATGACTTTGCAAGAGTTAAAAAACATAAGATTTCTACCAAATTAAAGGGAAAAATATCTTTTTGGTCTATAAGTTTCAAAATGTTGATTTTTTTTTTTTTTTTGTTAAGTTTTGAGTTTGATATCAATTTAGTCCCCTAAGTTTTAAAATGTTACAATTTAACCTTGAAATATTTGAGTTTTGTTTCAATTAAATCTTTAGATTGACTTATACTTTTAATTTTGATTTTTTTACTGAATACTCACATTCAGTCTTTAGTATTAATGTATACTAATTAATTTAAAACAATTAAAACAACTCTAATTAACTAAGTTTCACAATTTTGTCATCACGATTAAAATTAATTCAAATTTTCGTATTATTTTTTAAAAATCTTAAAATCTAAGGGACAAATTGAAACAAAACTAAAAAATCCATCTTAGGGGAAACATTACAACATTTTGAAACCTTTGCACCAAGTGGGAACTAAACCCAAGATGTAGGGACCGAAAATGTAATTTTCGGTATGTTAGATCACCCGTCAATCCAAAAAGACTCTAATGTATTTTACTTGAATTTATTTATGTTGTGCAGAGTGGAGATTGTTTGGTATTTCTATGGGATACCGAAGTTGAAGTTCATATGCATATGCCTCTCCATCCATCCTCATTTTTCAGTAATTGTGGAATTCAAGCTCGAAGGGTATGGTTCTACGAAACAGGCGATTCTTGTACAATAATCTATTTTCCTTTTGATGTGTATGAGCATTTTATGATGATTTGTTTTCCCTTTGTAGATGAAAACTCGTCTCAAGATTAACTCACACAGTCACACTCACTAAAAAAATATATACATTTAATAGTCTTAGTTGGGATTTTGTGTGCTATATGATACAACTTCTCTTGGCCATTCAAGGAGTTCATAAACAATTAACATTTTGTAGAGAAGATTAGTAGTTGCACCATAACATCGCAAGTGATCCTGAGTTGTACACCTTTTCAAACGTTGTCTCCTTTATAGAAATCCAACAAGTTTCGTCATTATCTTTGTCATCTCCTCAATATGTTTGGGTCGTGAAAATTAGTCAAAAGCTTATCTATTGTAAGTCGTGATCAACATCCATAAACATTAGATTATTCTATAGAGCAACATTAACTTAGTACTAAAAATATTAGGGGCAGTTGCAGAAATGGCAAATTTTTTTATTAAAATTAGGCCCATAGCCCATGTTTTATGATTTTGCAAAAATGACAAAATCCTTAACCTCAGCCCAATTTCATTGATGGATTAAATAGAAAATGCCGAAAATACCCCTACATATATTTGAATCACTTTGAGCTCTCTTCTTCTTCACGTAACGTATTCTCTATATTCACGTGTTTTATGTTGTTGAAAGTTGAAAAAACAGTTGCTTTATTTTGTGTGGGGAGAAAGGTTCTTTACCAGAAATGTTTAGACTTATTAGAATTCCTGGGAAAATAATATTTTGCAGTCAACTTTACGAAAAGGAACTTCATAAGTTGAAAGAAAAAAAGAAAAAAGGAAAAAAAATGATTCCGTCAACTTTATGGAAAATTACCGAACTCAAAAGAATTAATAAAATATGTATATATTTCAGTTTTTTTTTTCTTTTTTTTTTTTTTAAAAAAATAATGAATTGGATAAAAAAAAAATTTAGTCTATCTTTACAAATAGTTTCCATGCAACTTGTTTTTTGGAAATTGTTTTCAAAAGGACTCTATTTGAACGCTAAATCCATGTTTCAATGCATGGTTGATTTATTTTAGGAGTTTTTGATATTACAAGATTTGATTTGTATATGTTCCGAACTTTATGTCCATTTCTTTTGGCCATTAAATAATAGTTTTTCTTGAATAAGTAAAAGTTAGATCTAGAAAACAGCACCAAACTGCGGATAAATTCTTAATTAGGATGAGAATGAATGAAGGTTTTTGTTAAAAGAAGTGATTTGAAAAGGAGATTTGTGTTTAATGCCTTGTGTTTATGTGGAAATTTTAGACTTACATCTTAGAGCTAGGTTTTTAATTGGCAGGTATATTATTGAAACACCTAAATTTCTTAGCATTTTCACATTACCACCGCCATGTTCTCGATCAAGGTTGACAACCTTGATCCTTTTCTCGATGCAACCTCTCTATTCACTGAATTTATTAACGACGAGATCTGCGTGAAATTCTCGCCATCGACGTTCTCGATAATTGCTCGGTACCAATGCCCTCCCTTCTTTGCAATGATGTTCATGCCCCATCCATTATTCGCCGAGTATTCCGTTGATCGGAATCACATTTCCAGGATTTCCCTCAGATGCTTCCACAATGCTTTGTTGGAAGGCCAAAGCTATTCCTCTATGAGTATGCATCTCCAGGAACCCCAAAATAGCATACTCCTAAAATTTGAGCCTTCAAGTTAG

mRNA sequence

ATGTTCTCTATCAAGATTGACGACCTTGATCCTTTCTTGGATGCAACCACTCTATTCGCCGAAATTGTGAACGACGAAATCTGCCTGAAAATCTCACCGTCGACGTTTTCGATAATTTCTCGCTACCAGCACCCTCTTTTCTTTGCAATGATGATTATGCCGCCACCATTTTTCGCTGAGTATTCCGTTGATCGGAATCACAATTCAAAGATTTCCCTATCGGCCTTCCACAATGCTATGTTGGAAGGCCAAAGCTTTTGTTCTTCAATGACCATCCATGTTCATGAACAAGAAAATAATATACACCTTATATTTGAGCCTTCAAGGCCTTCTGCACTACCATTGCATCATGAATTGACATTCCTGCCTATGGAAGACTGGTCGCTTGGCGAAGTTACCTTATTAAGTGGAAAAATTTTATCCATTGAGTCAGAAATGTTTAGCAATATTTTGACAACATTTTCTGTGTACAATGAAGCTGATTCAATTTTGATTACTTTAGTGGGTACACAAGCCACCTTCTCTGTCATTCCATTTGATCACGAGATAACTGTTACTGAAGAGAGTGGAGATTGTTTGGTATTTCTATGGGATACCGAAGTTGAAGTTCATATGCATATGCCTCTCCATCCATCCTCATTTTTCAGTAATTGTGGAATTCAAGCTCGAAGGGTTGACAACCTTGATCCTTTTCTCGATGCAACCTCTCTATTCACTGAATTTATTAACGACGAGATCTGCGTGAAATTCTCGCCATCGACGTTCTCGATAATTGCTCGGTACCAATGCCCTCCCTTCTTTGCAATGATGTTCATGCCCCATCCATTATTCGCCGAGTATTCCGTTGATCGGAATCACATTTCCAGGATTTCCCTCAGATGCTTCCACAATGCTTTGTTGGAAGGCCAAAGCTATTCCTCTATGAGTATGCATCTCCAGGAACCCCAAAATAGCATACTCCTAAAATTTGAGCCTTCAAGTTAG

Coding sequence (CDS)

ATGTTCTCTATCAAGATTGACGACCTTGATCCTTTCTTGGATGCAACCACTCTATTCGCCGAAATTGTGAACGACGAAATCTGCCTGAAAATCTCACCGTCGACGTTTTCGATAATTTCTCGCTACCAGCACCCTCTTTTCTTTGCAATGATGATTATGCCGCCACCATTTTTCGCTGAGTATTCCGTTGATCGGAATCACAATTCAAAGATTTCCCTATCGGCCTTCCACAATGCTATGTTGGAAGGCCAAAGCTTTTGTTCTTCAATGACCATCCATGTTCATGAACAAGAAAATAATATACACCTTATATTTGAGCCTTCAAGGCCTTCTGCACTACCATTGCATCATGAATTGACATTCCTGCCTATGGAAGACTGGTCGCTTGGCGAAGTTACCTTATTAAGTGGAAAAATTTTATCCATTGAGTCAGAAATGTTTAGCAATATTTTGACAACATTTTCTGTGTACAATGAAGCTGATTCAATTTTGATTACTTTAGTGGGTACACAAGCCACCTTCTCTGTCATTCCATTTGATCACGAGATAACTGTTACTGAAGAGAGTGGAGATTGTTTGGTATTTCTATGGGATACCGAAGTTGAAGTTCATATGCATATGCCTCTCCATCCATCCTCATTTTTCAGTAATTGTGGAATTCAAGCTCGAAGGGTTGACAACCTTGATCCTTTTCTCGATGCAACCTCTCTATTCACTGAATTTATTAACGACGAGATCTGCGTGAAATTCTCGCCATCGACGTTCTCGATAATTGCTCGGTACCAATGCCCTCCCTTCTTTGCAATGATGTTCATGCCCCATCCATTATTCGCCGAGTATTCCGTTGATCGGAATCACATTTCCAGGATTTCCCTCAGATGCTTCCACAATGCTTTGTTGGAAGGCCAAAGCTATTCCTCTATGAGTATGCATCTCCAGGAACCCCAAAATAGCATACTCCTAAAATTTGAGCCTTCAAGTTAG

Protein sequence

MFSIKIDDLDPFLDATTLFAEIVNDEICLKISPSTFSIISRYQHPLFFAMMIMPPPFFAEYSVDRNHNSKISLSAFHNAMLEGQSFCSSMTIHVHEQENNIHLIFEPSRPSALPLHHELTFLPMEDWSLGEVTLLSGKILSIESEMFSNILTTFSVYNEADSILITLVGTQATFSVIPFDHEITVTEESGDCLVFLWDTEVEVHMHMPLHPSSFFSNCGIQARRVDNLDPFLDATSLFTEFINDEICVKFSPSTFSIIARYQCPPFFAMMFMPHPLFAEYSVDRNHISRISLRCFHNALLEGQSYSSMSMHLQEPQNSILLKFEPSS

Homology

[Close]

BLAST of Clc06G04210 vs. NCBI nr
Match: XP_031736681.1 (uncharacterized protein LOC116402062 [Cucumis sativus] >XP_031741497.1 uncharacterized protein LOC116403863 [Cucumis sativus])

HSP 1 Score: 248.4 bits (633), Expect = 8.3e-62
Identity = 130/226 (57.52%), Postives = 170/226 (75.22%), Query Frame = 0


Query: 1   MFSIKIDDLDPFLDATTLFAEIVNDEICLKISPSTFSIISRYQHPLFFAMMIMPPPFFAE 60
           MFSIKIDD+DPFLDAT LFAE+ +DEICLK  PST SII RY+ P+FF  M +P P F E
Sbjct: 1   MFSIKIDDIDPFLDATILFAELTHDEICLKFLPSTMSIIVRYECPIFFVTMSLPQPLFVE 60

Query: 61  YSVDRNHNSKISLSAFHNAMLEGQSFCSSMTIHVHEQENNIHLIFEPSRPSALPLHHELT 120
           YSVDRNH S+ISL +F++A+LE Q+F +++ IH+ E +N I L FEPS PS LPL+ ELT
Sbjct: 61  YSVDRNHISRISLLSFYSALLECQTF-AALNIHLQEDQNKILLTFEPSSPSTLPLNRELT 120

Query: 121 F-LPMEDWSLGEVTLLSGKILSIESEMFSNILTTFSVYNEADSILITLVGTQATFSVIPF 180
           F +PMEDWS  +V    GK+ SIES++F +I+  FS + EA++ILI   G++ +FS++PF
Sbjct: 121 FVVPMEDWSTAQVN-FDGKVFSIESQLFIDIIQLFSSFTEANTILIASFGSKVSFSILPF 180

Query: 181 DHEITVTEESGDCLVFLWDTEVEVHMHMPLHPSSFFSNCGIQARRV 226
             E  +TEESG CL+F  D E+E  + MPL PSSFFSNC +Q++RV
Sbjct: 181 -AETPLTEESGTCLIF-GDREIETQIQMPLLPSSFFSNCVLQSQRV 222

[Close]

BLAST of Clc06G04210 vs. NCBI nr
Match: KGN61523.1 (hypothetical protein Csa_006491 [Cucumis sativus])

HSP 1 Score: 194.9 bits (494), Expect = 1.1e-45
Identity = 92/103 (89.32%), Postives = 99/103 (96.12%), Query Frame = 0


Query: 224 RVDNLDPFLDATSLFTEFINDEICVKFSPSTFSIIARYQCPPFFAMMFMPHPLFAEYSVD 283
           +VDNLDPFLDATSLFTEFINDEIC+KFSPSTFS+IARYQCP FFAM+FMPHPLF EYSVD
Sbjct: 5   KVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMLFMPHPLFVEYSVD 64

Query: 284 RNHISRISLRCFHNALLEGQSYSSMSMHLQEPQNSILLKFEPS 327
           RNHISRISLRCF NALLEGQSYSSMS+HL+EPQN+IL KFEPS
Sbjct: 65  RNHISRISLRCFRNALLEGQSYSSMSIHLREPQNTILFKFEPS 107

[Close]

BLAST of Clc06G04210 vs. NCBI nr
Match: KGN45637.1 (hypothetical protein Csa_005027 [Cucumis sativus])

HSP 1 Score: 177.9 bits (450), Expect = 1.4e-40
Identity = 92/163 (56.44%), Postives = 120/163 (73.62%), Query Frame = 0


Query: 1   MFSIKIDDLDPFLDATTLFAEIVNDEICLKISPSTFSIISRYQHPLFFAMMIMPPPFFAE 60
           MFSIKID LDP LDA +LF +IVND+ICLK S STFSII+RYQHP FFAM+ +P P FAE
Sbjct: 1   MFSIKIDKLDPLLDAISLFTDIVNDKICLKFSLSTFSIIARYQHPFFFAMLFIPEPLFAE 60

Query: 61  YSVDRNHNSKISLSAFHNAMLEGQSFCSSMTIHVHEQENNIHLIFEPSRPSALPLHHELT 120
           Y V R+H  ++SL + H A+  GQ++ SS+ IH+ E++N I L FEPSR S +P+  ++ 
Sbjct: 61  YFVGRDHILRVSLLSLHTALARGQTY-SSLRIHLQEEQNIICLAFEPSRHSPVPMRRKMR 120

Query: 121 F-LPMEDWSLGEVTLLSGKILSIESEMFSNILTTFSVYNEADS 163
           F +PMEDWS GE+     K  SIES++F +I+TTF  YNE D+
Sbjct: 121 FEVPMEDWSAGEID-FDAKSFSIESDLFRDIITTFYDYNEVDT 161

[Close]

BLAST of Clc06G04210 vs. NCBI nr
Match: KAA0047513.1 (hypothetical protein E6C27_scaffold498G001420 [Cucumis melo var. makuwa])

HSP 1 Score: 142.1 bits (357), Expect = 8.4e-30
Identity = 79/140 (56.43%), Postives = 102/140 (72.86%), Query Frame = 0


Query: 50  MMIMPPPFFAEYSVDRNHNSKISLSAFHNAMLEGQSFCSSMTIHVHEQENNIHLIFEPSR 109
           MM MP P FAEYSVDRNH S +SL   HNA+++G++F +++ I + E++N I L FE S 
Sbjct: 1   MMSMPQPLFAEYSVDRNHISIVSLPPLHNALVDGETF-ATLNISIEEEQNKIFLTFEASS 60

Query: 110 PSALPLHHELTF-LPMEDWSLGEVTLLSGKILSIESEMFSNILTTFSVYNEADSILITLV 169
           PS LPL+ ELTF +PMEDWS G V    GKI SIESE+F++I+  FS +NEAD+ILIT  
Sbjct: 61  PSTLPLNRELTFVVPMEDWSPGPVK-FDGKIFSIESELFTDIIQLFSAFNEADAILITAF 120

Query: 170 GTQATFSVIPFDHEITVTEE 189
           G++ TFSV PF  E  +TEE
Sbjct: 121 GSKVTFSVPPF-AETPLTEE 137

[Close]

BLAST of Clc06G04210 vs. NCBI nr
Match: TYK26483.1 (hypothetical protein E5676_scaffold313G00490 [Cucumis melo var. makuwa])

HSP 1 Score: 142.1 bits (357), Expect = 8.4e-30
Identity = 79/140 (56.43%), Postives = 102/140 (72.86%), Query Frame = 0


Query: 50  MMIMPPPFFAEYSVDRNHNSKISLSAFHNAMLEGQSFCSSMTIHVHEQENNIHLIFEPSR 109
           MM MP P FAEYSVDRNH S +SL   HNA+++G++F +++ I + E++N I L FE S 
Sbjct: 1   MMSMPQPLFAEYSVDRNHISIVSLPPLHNALVDGETF-ATLNISIEEEQNKIFLTFEASS 60

Query: 110 PSALPLHHELTF-LPMEDWSLGEVTLLSGKILSIESEMFSNILTTFSVYNEADSILITLV 169
           PS LPL+ ELTF +PMEDWS G V    GKI SIESE+F++I+  FS +NEAD+ILIT  
Sbjct: 61  PSTLPLNRELTFVVPMEDWSPGPVK-FDGKIFSIESELFTDIIQLFSAFNEADAILITAF 120

Query: 170 GTQATFSVIPFDHEITVTEE 189
           G++ TFSV PF  E  +TEE
Sbjct: 121 GSKVTFSVPPF-AETPLTEE 137

[Close]

BLAST of Clc06G04210 vs. ExPASy TrEMBL
Match: A0A0A0LIE0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G155090 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 5.3e-46
Identity = 92/103 (89.32%), Postives = 99/103 (96.12%), Query Frame = 0


Query: 224 RVDNLDPFLDATSLFTEFINDEICVKFSPSTFSIIARYQCPPFFAMMFMPHPLFAEYSVD 283
           +VDNLDPFLDATSLFTEFINDEIC+KFSPSTFS+IARYQCP FFAM+FMPHPLF EYSVD
Sbjct: 5   KVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMLFMPHPLFVEYSVD 64

Query: 284 RNHISRISLRCFHNALLEGQSYSSMSMHLQEPQNSILLKFEPS 327
           RNHISRISLRCF NALLEGQSYSSMS+HL+EPQN+IL KFEPS
Sbjct: 65  RNHISRISLRCFRNALLEGQSYSSMSIHLREPQNTILFKFEPS 107

[Close]

BLAST of Clc06G04210 vs. ExPASy TrEMBL
Match: A0A0A0KB76 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G002310 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 6.7e-41
Identity = 92/163 (56.44%), Postives = 120/163 (73.62%), Query Frame = 0


Query: 1   MFSIKIDDLDPFLDATTLFAEIVNDEICLKISPSTFSIISRYQHPLFFAMMIMPPPFFAE 60
           MFSIKID LDP LDA +LF +IVND+ICLK S STFSII+RYQHP FFAM+ +P P FAE
Sbjct: 1   MFSIKIDKLDPLLDAISLFTDIVNDKICLKFSLSTFSIIARYQHPFFFAMLFIPEPLFAE 60

Query: 61  YSVDRNHNSKISLSAFHNAMLEGQSFCSSMTIHVHEQENNIHLIFEPSRPSALPLHHELT 120
           Y V R+H  ++SL + H A+  GQ++ SS+ IH+ E++N I L FEPSR S +P+  ++ 
Sbjct: 61  YFVGRDHILRVSLLSLHTALARGQTY-SSLRIHLQEEQNIICLAFEPSRHSPVPMRRKMR 120

Query: 121 F-LPMEDWSLGEVTLLSGKILSIESEMFSNILTTFSVYNEADS 163
           F +PMEDWS GE+     K  SIES++F +I+TTF  YNE D+
Sbjct: 121 FEVPMEDWSAGEID-FDAKSFSIESDLFRDIITTFYDYNEVDT 161

[Close]

BLAST of Clc06G04210 vs. ExPASy TrEMBL
Match: A0A5A7TVD7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G001420 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 4.0e-30
Identity = 79/140 (56.43%), Postives = 102/140 (72.86%), Query Frame = 0


Query: 50  MMIMPPPFFAEYSVDRNHNSKISLSAFHNAMLEGQSFCSSMTIHVHEQENNIHLIFEPSR 109
           MM MP P FAEYSVDRNH S +SL   HNA+++G++F +++ I + E++N I L FE S 
Sbjct: 1   MMSMPQPLFAEYSVDRNHISIVSLPPLHNALVDGETF-ATLNISIEEEQNKIFLTFEASS 60

Query: 110 PSALPLHHELTF-LPMEDWSLGEVTLLSGKILSIESEMFSNILTTFSVYNEADSILITLV 169
           PS LPL+ ELTF +PMEDWS G V    GKI SIESE+F++I+  FS +NEAD+ILIT  
Sbjct: 61  PSTLPLNRELTFVVPMEDWSPGPVK-FDGKIFSIESELFTDIIQLFSAFNEADAILITAF 120

Query: 170 GTQATFSVIPFDHEITVTEE 189
           G++ TFSV PF  E  +TEE
Sbjct: 121 GSKVTFSVPPF-AETPLTEE 137

[Close]

BLAST of Clc06G04210 vs. ExPASy TrEMBL
Match: A0A5D3DSC2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G00490 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 4.0e-30
Identity = 79/140 (56.43%), Postives = 102/140 (72.86%), Query Frame = 0


Query: 50  MMIMPPPFFAEYSVDRNHNSKISLSAFHNAMLEGQSFCSSMTIHVHEQENNIHLIFEPSR 109
           MM MP P FAEYSVDRNH S +SL   HNA+++G++F +++ I + E++N I L FE S 
Sbjct: 1   MMSMPQPLFAEYSVDRNHISIVSLPPLHNALVDGETF-ATLNISIEEEQNKIFLTFEASS 60

Query: 110 PSALPLHHELTF-LPMEDWSLGEVTLLSGKILSIESEMFSNILTTFSVYNEADSILITLV 169
           PS LPL+ ELTF +PMEDWS G V    GKI SIESE+F++I+  FS +NEAD+ILIT  
Sbjct: 61  PSTLPLNRELTFVVPMEDWSPGPVK-FDGKIFSIESELFTDIIQLFSAFNEADAILITAF 120

Query: 170 GTQATFSVIPFDHEITVTEE 189
           G++ TFSV PF  E  +TEE
Sbjct: 121 GSKVTFSVPPF-AETPLTEE 137

[Close]

BLAST of Clc06G04210 vs. ExPASy TrEMBL
Match: A0A1S3CL88 (uncharacterized protein LOC103502250 OS=Cucumis melo OX=3656 GN=LOC103502250 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 4.2e-27
Identity = 81/227 (35.68%), Postives = 126/227 (55.51%), Query Frame = 0


Query: 1   MFSIKIDDLDPFLDATTLFAEIVNDEICLKISPSTFSIISRYQHPLFFAMMIMPPPFFAE 60
           MF +K+ + DP LDAT+  A+I  D   LK +PS F II+ ++ P F A + + P +F  
Sbjct: 1   MFLVKLKNFDPLLDATSFLAQISFDNADLKFTPSKFFIIASHRSPRFIATLQLSPQWFTT 60

Query: 61  YSVDRNHNSKISLSAFHNAMLEGQSFCSSMTIHVHEQENNIHLIFEPSRPSALPLHHELT 120
           +SVD +H+SK+SL +FH+A+L+G SF +SMTIH+ ++ N + L F+       PLHHELT
Sbjct: 61  FSVDNDHSSKVSLESFHDAILDGGSF-ASMTIHLLDKTNQMILRFDTPSSEIQPLHHELT 120

Query: 121 FLP--MEDWSLGEVTLLSGKILSIESEMFSNILTTFSVYNEADSILITLVGTQATFSVIP 180
             P   ED  +G+  L   K   ++S+    I+    ++     I + +  ++  FS+  
Sbjct: 121 LSPPQAEDNQIGQHELDERKYFIVKSKALRRIIKDLPIFQNDSIISVDVTNSRVKFSIA- 180

Query: 181 FDHEITVTEESGDCLVFLWDTEVEVHMHMPLHPSSFFSNCGIQARRV 226
              EI +T E   C +  ++ EVE    + L P  FF N   +A RV
Sbjct: 181 -SKEIILT-EGRHCKIEGFEEEVETQFQIILCPMMFFLNFTYKANRV 223

The following BLAST results are available for this feature:

BLAST of Clc06G04210 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031736681.1	8.3e-62	57.52	uncharacterized protein LOC116402062 [Cucumis sativus] >XP_031741497.1 uncharact...	[more]
KGN61523.1	1.1e-45	89.32	hypothetical protein Csa_006491 [Cucumis sativus]	[more]
KGN45637.1	1.4e-40	56.44	hypothetical protein Csa_005027 [Cucumis sativus]	[more]
KAA0047513.1	8.4e-30	56.43	hypothetical protein E6C27_scaffold498G001420 [Cucumis melo var. makuwa]	[more]
TYK26483.1	8.4e-30	56.43	hypothetical protein E5676_scaffold313G00490 [Cucumis melo var. makuwa]	[more]

BLAST of Clc06G04210 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc06G04210 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LIE0	5.3e-46	89.32	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G155090 PE=4 SV=1	[more]
A0A0A0KB76	6.7e-41	56.44	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G002310 PE=4 SV=1	[more]
A0A5A7TVD7	4.0e-30	56.43	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3DSC2	4.0e-30	56.43	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CL88	4.2e-27	35.68	uncharacterized protein LOC103502250 OS=Cucumis melo OX=3656 GN=LOC103502250 PE=...	[more]

BLAST of Clc06G04210 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.70.10.10		coord: 1..216 e-value: 1.1E-11 score: 46.6 coord: 223..327 e-value: 9.3E-7 score: 30.4
None	No IPR available	SUPERFAMILY	55979	DNA clamp	coord: 242..324
None	No IPR available	SUPERFAMILY	55979	DNA clamp	coord: 1..107

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc06G04210.2	Clc06G04210.2	mRNA