Clc06G03640 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc06G03640
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Late embryogenesis abundant protein, LEA-14
Location	ClcChr06: 3861164 .. 3862127 (+)
RNA-Seq Expression	Clc06G03640
Synteny	Clc06G03640

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTAAAAGTCATGCATGTCTTTGCTTACCTTCAATTCAACATTGTTCAATGGCTTCAAATTTTGGGCATTTCCCTACCATTGCCTTATAAACTCAAGCACTCAAAATCCCACAACCCAAGATTTTTCTTCTCTCCCTTATGCCATAACCATGGTGGACAAGGACCAAGCTCATCCATTTGCCTCAGCTACCCACCATCGTTCGAGCAGCGACAACGGCGAAACAAAATTATATCTAAAGAGAATCCAACGAAGAAGATTCATAAAATGTTGCAGTTTCATAGCCACCCTTCTCATAATACCAACAATAATCATCATCATCATCTTGATGTTCACTCTATTTCAAATCAAGGATCCCATAATTCAAATGAACAGAATTTCAATCACAAAGCTCGAGTTGATCAACGATGTCATACCAAAGCCAGGATCCAACGTGTCACTAACTGCTGACGTGTCAGTGAAAAATCCCAACATGGCATCGTTCAAGTATAGTAACACGACCACTACTTTGTTCATTAATGAGACAGTGATAGGGGAGGCACGAGGGCCGCCAGGGAAAGCCAAGGCACGACGAACGGTGCGAATGAACGTCTCCATCGACATCGTTGCTGATCGAGTCTTGTCGAACCTCGACGATGACGTGAGTTTGGGGAAGGTGAGATTGCAAAGCTTTTCGAGGATTCCGGGGAGGGTAAAGTTGCTGCATCTTATAGGAAGAAATGTTGTTGTCAAAATGAATTGTTCTTTCATGATCAATATCTTCAACAGGTCAATTGAGGATCAGGAATGCAAAAGGAAGGTGAAAATTTAGACTTTAATATTATTTTTTTTTCCCTTCATTTGAAGTTTTTAACCTTTTTATATGCTCAATTTTTGGTTCTGCAATGTGTGTGTTGGTGTTAGGACAATCGTTTCCTTGATTTCTCATTTAGTAAAATATGAAAATCTAATATAGCTTATTAATATT

mRNA sequence

CTAAAAGTCATGCATGTCTTTGCTTACCTTCAATTCAACATTGTTCAATGGCTTCAAATTTTGGGCATTTCCCTACCATTGCCTTATAAACTCAAGCACTCAAAATCCCACAACCCAAGATTTTTCTTCTCTCCCTTATGCCATAACCATGGTGGACAAGGACCAAGCTCATCCATTTGCCTCAGCTACCCACCATCGTTCGAGCAGCGACAACGGCGAAACAAAATTATATCTAAAGAGAATCCAACGAAGAAGATTCATAAAATGTTGCAGTTTCATAGCCACCCTTCTCATAATACCAACAATAATCATCATCATCATCTTGATGTTCACTCTATTTCAAATCAAGGATCCCATAATTCAAATGAACAGAATTTCAATCACAAAGCTCGAGTTGATCAACGATGTCATACCAAAGCCAGGATCCAACGTGTCACTAACTGCTGACGTGTCAGTGAAAAATCCCAACATGGCATCGTTCAAGTATAGTAACACGACCACTACTTTGTTCATTAATGAGACAGTGATAGGGGAGGCACGAGGGCCGCCAGGGAAAGCCAAGGCACGACGAACGGTGCGAATGAACGTCTCCATCGACATCGTTGCTGATCGAGTCTTGTCGAACCTCGACGATGACGTGAGTTTGGGGAAGGTGAGATTGCAAAGCTTTTCGAGGATTCCGGGGAGGGTAAAGTTGCTGCATCTTATAGGAAGAAATGTTGTTGTCAAAATGAATTGTTCTTTCATGATCAATATCTTCAACAGGTCAATTGAGGATCAGGAATGCAAAAGGAAGGTGAAAATTTAGACTTTAATATTATTTTTTTTTCCCTTCATTTGAAGTTTTTAACCTTTTTATATGCTCAATTTTTGGTTCTGCAATGTGTGTGTTGGTGTTAGGACAATCGTTTCCTTGATTTCTCATTTAGTAAAATATGAAAATCTAATATAGCTTATTAATATT

Coding sequence (CDS)

ATGTCTTTGCTTACCTTCAATTCAACATTGTTCAATGGCTTCAAATTTTGGGCATTTCCCTACCATTGCCTTATAAACTCAAGCACTCAAAATCCCACAACCCAAGATTTTTCTTCTCTCCCTTATGCCATAACCATGGTGGACAAGGACCAAGCTCATCCATTTGCCTCAGCTACCCACCATCGTTCGAGCAGCGACAACGGCGAAACAAAATTATATCTAAAGAGAATCCAACGAAGAAGATTCATAAAATGTTGCAGTTTCATAGCCACCCTTCTCATAATACCAACAATAATCATCATCATCATCTTGATGTTCACTCTATTTCAAATCAAGGATCCCATAATTCAAATGAACAGAATTTCAATCACAAAGCTCGAGTTGATCAACGATGTCATACCAAAGCCAGGATCCAACGTGTCACTAACTGCTGACGTGTCAGTGAAAAATCCCAACATGGCATCGTTCAAGTATAGTAACACGACCACTACTTTGTTCATTAATGAGACAGTGATAGGGGAGGCACGAGGGCCGCCAGGGAAAGCCAAGGCACGACGAACGGTGCGAATGAACGTCTCCATCGACATCGTTGCTGATCGAGTCTTGTCGAACCTCGACGATGACGTGAGTTTGGGGAAGGTGAGATTGCAAAGCTTTTCGAGGATTCCGGGGAGGGTAAAGTTGCTGCATCTTATAGGAAGAAATGTTGTTGTCAAAATGAATTGTTCTTTCATGATCAATATCTTCAACAGGTCAATTGAGGATCAGGAATGCAAAAGGAAGGTGAAAATTTAG

Protein sequence

MSLLTFNSTLFNGFKFWAFPYHCLINSSTQNPTTQDFSSLPYAITMVDKDQAHPFASATHHRSSSDNGETKLYLKRIQRRRFIKCCSFIATLLIIPTIIIIIILMFTLFQIKDPIIQMNRISITKLELINDVIPKPGSNVSLTADVSVKNPNMASFKYSNTTTTLFINETVIGEARGPPGKAKARRTVRMNVSIDIVADRVLSNLDDDVSLGKVRLQSFSRIPGRVKLLHLIGRNVVVKMNCSFMINIFNRSIEDQECKRKVKI

Homology

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BLAST of Clc06G03640 vs. NCBI nr
Match: XP_038875202.1 (uncharacterized protein LOC120067718 [Benincasa hispida])

HSP 1 Score: 401.4 bits (1030), Expect = 6.2e-108
Identity = 211/245 (86.12%), Postives = 223/245 (91.02%), Query Frame = 0


Query: 20  PYHCLINSSTQNPTTQDFSSLPYAITMVDKDQAHPFASATHHRSSSDNGETKLYLKRIQR 79
           P HCLINSSTQ     +    P  ITMVDKDQA P A ATHHRSSSDNGET L+LKRIQR
Sbjct: 21  PNHCLINSSTQK--FHNLIFCPSPITMVDKDQAQPLAPATHHRSSSDNGETNLHLKRIQR 80

Query: 80  RRFIKCCSFIATLLIIPTIIIIIILMFTLFQIKDPIIQMNRISITKLELINDVIPKPGSN 139
           RRFIKCC FI   LIIPTI+IIIILMFTLFQIKDP+I+MNR+SITKLELIN  IPKPGSN
Sbjct: 81  RRFIKCCGFIVVFLIIPTIMIIIILMFTLFQIKDPVIRMNRVSITKLELINGAIPKPGSN 140

Query: 140 VSLTADVSVKNPNMASFKYSNTTTTLFINETVIGEARGPPGKAKARRTVRMNVSIDIVAD 199
           +SLTADVSVKNPNMASFKYSNTTTTLFINETVIGEARGPPGKAKARRTVRMNV+IDIVAD
Sbjct: 141 MSLTADVSVKNPNMASFKYSNTTTTLFINETVIGEARGPPGKAKARRTVRMNVTIDIVAD 200

Query: 200 RVLSNLDDDVSLGKVRLQSFSRIPGRVKLLHLIGRNVVVKMNCSFMINIFNRSIEDQECK 259
           RVLSNLDDDVSLGKVRL+SFSRIPGRVKLLHLIGRNVVVKMNC+F+INIFNRSIEDQECK
Sbjct: 201 RVLSNLDDDVSLGKVRLRSFSRIPGRVKLLHLIGRNVVVKMNCTFLINIFNRSIEDQECK 260

Query: 260 RKVKI 265
           RKVK+
Sbjct: 261 RKVKM 263

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BLAST of Clc06G03640 vs. NCBI nr
Match: XP_008458164.1 (PREDICTED: uncharacterized protein LOC103497685 [Cucumis melo])

HSP 1 Score: 362.8 bits (930), Expect = 2.4e-96
Identity = 189/219 (86.30%), Postives = 209/219 (95.43%), Query Frame = 0


Query: 46  MVDKDQAHPFASATHHRSSSDNGETKLYLKRIQRRRFIKCCSFIATLLIIPTIIIIIILM 105
           MV KDQA P   AT  R SSDNGET+L+LKRIQR+RFIKCCSFIA LLIIPTI+IIIILM
Sbjct: 1   MVGKDQAQPLTPATLDRLSSDNGETELHLKRIQRKRFIKCCSFIAALLIIPTIVIIIILM 60

Query: 106 FTLFQIKDPIIQMNRISITKLELINDVIPKPGSNVSLTADVSVKNPNMASFKYSNTTTTL 165
           FTLFQIKDPII+MNR+SITKLELIN+VIPKPGSNVSLTADVSVKNPNMASFKYSNTTTTL
Sbjct: 61  FTLFQIKDPIIRMNRVSITKLELINNVIPKPGSNVSLTADVSVKNPNMASFKYSNTTTTL 120

Query: 166 FINETVIGEARGPPGKAKARRTVRMNVSIDIVADRVLSNLDDDVSLGKVRLQSFSRIPGR 225
           FINETVIGE RGPPGKAKAR+TVRMNV+IDIVADRVLSNL++DVSLGKVRL+SFSRIPG+
Sbjct: 121 FINETVIGEVRGPPGKAKARQTVRMNVTIDIVADRVLSNLNNDVSLGKVRLRSFSRIPGK 180

Query: 226 VKLLHLIGRNVVVKMNCSFMINIFNRSIEDQECKRKVKI 265
           VKLLHLIGRNVVVKMNC+F+INIF++SIEDQ+CKRK+K+
Sbjct: 181 VKLLHLIGRNVVVKMNCTFVINIFSKSIEDQKCKRKMKM 219

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BLAST of Clc06G03640 vs. NCBI nr
Match: XP_011656360.1 (uncharacterized protein LOC105435724 [Cucumis sativus])

HSP 1 Score: 360.9 bits (925), Expect = 9.3e-96
Identity = 187/219 (85.39%), Postives = 208/219 (94.98%), Query Frame = 0


Query: 46  MVDKDQAHPFASATHHRSSSDNGETKLYLKRIQRRRFIKCCSFIATLLIIPTIIIIIILM 105
           MVDKDQA P   AT +R SSDNGET+L+LKRIQR+RFIKCCSFI  LL+IPTI+IIIILM
Sbjct: 1   MVDKDQAQPLTPATLNRLSSDNGETRLHLKRIQRKRFIKCCSFIVALLMIPTIVIIIILM 60

Query: 106 FTLFQIKDPIIQMNRISITKLELINDVIPKPGSNVSLTADVSVKNPNMASFKYSNTTTTL 165
           FTLFQIKDPIIQMNR+SITKLELIN+VIPKPGSNVSLTADVSVKNPNMASFKYSNTTTTL
Sbjct: 61  FTLFQIKDPIIQMNRVSITKLELINNVIPKPGSNVSLTADVSVKNPNMASFKYSNTTTTL 120

Query: 166 FINETVIGEARGPPGKAKARRTVRMNVSIDIVADRVLSNLDDDVSLGKVRLQSFSRIPGR 225
           FINETVIGE RGP GKAKAR+TVRMNV+IDIVADRVLSNL++DVSLGKVRL+SFSRIPG+
Sbjct: 121 FINETVIGEVRGPSGKAKARQTVRMNVTIDIVADRVLSNLNNDVSLGKVRLRSFSRIPGK 180

Query: 226 VKLLHLIGRNVVVKMNCSFMINIFNRSIEDQECKRKVKI 265
           VKLLH IGRNVVVKMNC+F+INIF++SIEDQ+CKRK+K+
Sbjct: 181 VKLLHFIGRNVVVKMNCTFVINIFSKSIEDQKCKRKMKM 219

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BLAST of Clc06G03640 vs. NCBI nr
Match: TYK14031.1 (Late embryogenesis abundant protein, LEA-14 [Cucumis melo var. makuwa])

HSP 1 Score: 340.1 bits (871), Expect = 1.7e-89
Identity = 179/204 (87.75%), Postives = 194/204 (95.10%), Query Frame = 0


Query: 46  MVDKDQAHPFASATHHRSSSDNGETKLYLKRIQRRRFIKCCSFIATLLIIPTIIIIIILM 105
           MV KDQA P   AT  R SSDNGET+L+LKRIQR+RFIKCCSFIA LLIIPTI+IIIILM
Sbjct: 1   MVGKDQAQPLTPATLDRLSSDNGETELHLKRIQRKRFIKCCSFIAALLIIPTIVIIIILM 60

Query: 106 FTLFQIKDPIIQMNRISITKLELINDVIPKPGSNVSLTADVSVKNPNMASFKYSNTTTTL 165
           FTLFQIKDPII+MNR+SITKLELIN+VIPKPGSNVSLTADVSVKNPNMASFKYSNTTTTL
Sbjct: 61  FTLFQIKDPIIRMNRVSITKLELINNVIPKPGSNVSLTADVSVKNPNMASFKYSNTTTTL 120

Query: 166 FINETVIGEARGPPGKAKARRTVRMNVSIDIVADRVLSNLDDDVSLGKVRLQSFSRIPGR 225
           FINETVIGE RGPPGKAKAR+TVRMNV+IDIVADRVLSNL++DVSLGKVRL+SFSRIPG+
Sbjct: 121 FINETVIGEVRGPPGKAKARQTVRMNVTIDIVADRVLSNLNNDVSLGKVRLRSFSRIPGK 180

Query: 226 VKLLHLIGRNVVVKMNCSFMINIF 250
           VKLLHLIGRNVVVKMNC+F+INIF
Sbjct: 181 VKLLHLIGRNVVVKMNCTFVINIF 204

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BLAST of Clc06G03640 vs. NCBI nr
Match: KAG7013763.1 (Late embryogenesis abundant protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 320.5 bits (820), Expect = 1.4e-83
Identity = 167/219 (76.26%), Postives = 195/219 (89.04%), Query Frame = 0


Query: 46  MVDKDQAHPFASATHHRSSSDNGETKLYLKRIQRRRFIKCCSFIATLLIIPTIIIIIILM 105
           M DKDQA P A  TH R SSD+ + +L+LKRIQRRRFIK   FI  LLII ++I+I+ILM
Sbjct: 1   MADKDQARPLAPTTHCRPSSDDYQEQLHLKRIQRRRFIKLFCFIIGLLIILSVIVILILM 60

Query: 106 FTLFQIKDPIIQMNRISITKLELINDVIPKPGSNVSLTADVSVKNPNMASFKYSNTTTTL 165
           FTLFQ+KDPIIQMN+ISITKLELIN VIPKPGSNVSLTADVSVKNPN+ASFKYSNTTTTL
Sbjct: 61  FTLFQVKDPIIQMNKISITKLELINGVIPKPGSNVSLTADVSVKNPNVASFKYSNTTTTL 120

Query: 166 FINETVIGEARGPPGKAKARRTVRMNVSIDIVADRVLSNLDDDVSLGKVRLQSFSRIPGR 225
           +INETVIGEARGPPG+AKARRTV+MN++I+IV DR+L NL+ D+S GK+RL+SFSR+PGR
Sbjct: 121 YINETVIGEARGPPGQAKARRTVQMNLTINIVVDRLLLNLNSDMSSGKLRLRSFSRVPGR 180

Query: 226 VKLLHLIGRNVVVKMNCSFMINIFNRSIEDQECKRKVKI 265
           VKLLH++ RN+VVKMNC+  INIFN+SIEDQ CKRKVKI
Sbjct: 181 VKLLHILRRNIVVKMNCTSTINIFNKSIEDQNCKRKVKI 219

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BLAST of Clc06G03640 vs. ExPASy TrEMBL
Match: A0A1S3C8G8 (uncharacterized protein LOC103497685 OS=Cucumis melo OX=3656 GN=LOC103497685 PE=4 SV=1)

HSP 1 Score: 362.8 bits (930), Expect = 1.2e-96
Identity = 189/219 (86.30%), Postives = 209/219 (95.43%), Query Frame = 0


Query: 46  MVDKDQAHPFASATHHRSSSDNGETKLYLKRIQRRRFIKCCSFIATLLIIPTIIIIIILM 105
           MV KDQA P   AT  R SSDNGET+L+LKRIQR+RFIKCCSFIA LLIIPTI+IIIILM
Sbjct: 1   MVGKDQAQPLTPATLDRLSSDNGETELHLKRIQRKRFIKCCSFIAALLIIPTIVIIIILM 60

Query: 106 FTLFQIKDPIIQMNRISITKLELINDVIPKPGSNVSLTADVSVKNPNMASFKYSNTTTTL 165
           FTLFQIKDPII+MNR+SITKLELIN+VIPKPGSNVSLTADVSVKNPNMASFKYSNTTTTL
Sbjct: 61  FTLFQIKDPIIRMNRVSITKLELINNVIPKPGSNVSLTADVSVKNPNMASFKYSNTTTTL 120

Query: 166 FINETVIGEARGPPGKAKARRTVRMNVSIDIVADRVLSNLDDDVSLGKVRLQSFSRIPGR 225
           FINETVIGE RGPPGKAKAR+TVRMNV+IDIVADRVLSNL++DVSLGKVRL+SFSRIPG+
Sbjct: 121 FINETVIGEVRGPPGKAKARQTVRMNVTIDIVADRVLSNLNNDVSLGKVRLRSFSRIPGK 180

Query: 226 VKLLHLIGRNVVVKMNCSFMINIFNRSIEDQECKRKVKI 265
           VKLLHLIGRNVVVKMNC+F+INIF++SIEDQ+CKRK+K+
Sbjct: 181 VKLLHLIGRNVVVKMNCTFVINIFSKSIEDQKCKRKMKM 219

[Close]

BLAST of Clc06G03640 vs. ExPASy TrEMBL
Match: A0A0A0KD33 (LEA_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G006820 PE=4 SV=1)

HSP 1 Score: 360.9 bits (925), Expect = 4.5e-96
Identity = 187/219 (85.39%), Postives = 208/219 (94.98%), Query Frame = 0


Query: 46  MVDKDQAHPFASATHHRSSSDNGETKLYLKRIQRRRFIKCCSFIATLLIIPTIIIIIILM 105
           MVDKDQA P   AT +R SSDNGET+L+LKRIQR+RFIKCCSFI  LL+IPTI+IIIILM
Sbjct: 1   MVDKDQAQPLTPATLNRLSSDNGETRLHLKRIQRKRFIKCCSFIVALLMIPTIVIIIILM 60

Query: 106 FTLFQIKDPIIQMNRISITKLELINDVIPKPGSNVSLTADVSVKNPNMASFKYSNTTTTL 165
           FTLFQIKDPIIQMNR+SITKLELIN+VIPKPGSNVSLTADVSVKNPNMASFKYSNTTTTL
Sbjct: 61  FTLFQIKDPIIQMNRVSITKLELINNVIPKPGSNVSLTADVSVKNPNMASFKYSNTTTTL 120

Query: 166 FINETVIGEARGPPGKAKARRTVRMNVSIDIVADRVLSNLDDDVSLGKVRLQSFSRIPGR 225
           FINETVIGE RGP GKAKAR+TVRMNV+IDIVADRVLSNL++DVSLGKVRL+SFSRIPG+
Sbjct: 121 FINETVIGEVRGPSGKAKARQTVRMNVTIDIVADRVLSNLNNDVSLGKVRLRSFSRIPGK 180

Query: 226 VKLLHLIGRNVVVKMNCSFMINIFNRSIEDQECKRKVKI 265
           VKLLH IGRNVVVKMNC+F+INIF++SIEDQ+CKRK+K+
Sbjct: 181 VKLLHFIGRNVVVKMNCTFVINIFSKSIEDQKCKRKMKM 219

[Close]

BLAST of Clc06G03640 vs. ExPASy TrEMBL
Match: A0A5D3CQG2 (Late embryogenesis abundant protein, LEA-14 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold268G00280 PE=4 SV=1)

HSP 1 Score: 340.1 bits (871), Expect = 8.2e-90
Identity = 179/204 (87.75%), Postives = 194/204 (95.10%), Query Frame = 0


Query: 46  MVDKDQAHPFASATHHRSSSDNGETKLYLKRIQRRRFIKCCSFIATLLIIPTIIIIIILM 105
           MV KDQA P   AT  R SSDNGET+L+LKRIQR+RFIKCCSFIA LLIIPTI+IIIILM
Sbjct: 1   MVGKDQAQPLTPATLDRLSSDNGETELHLKRIQRKRFIKCCSFIAALLIIPTIVIIIILM 60

Query: 106 FTLFQIKDPIIQMNRISITKLELINDVIPKPGSNVSLTADVSVKNPNMASFKYSNTTTTL 165
           FTLFQIKDPII+MNR+SITKLELIN+VIPKPGSNVSLTADVSVKNPNMASFKYSNTTTTL
Sbjct: 61  FTLFQIKDPIIRMNRVSITKLELINNVIPKPGSNVSLTADVSVKNPNMASFKYSNTTTTL 120

Query: 166 FINETVIGEARGPPGKAKARRTVRMNVSIDIVADRVLSNLDDDVSLGKVRLQSFSRIPGR 225
           FINETVIGE RGPPGKAKAR+TVRMNV+IDIVADRVLSNL++DVSLGKVRL+SFSRIPG+
Sbjct: 121 FINETVIGEVRGPPGKAKARQTVRMNVTIDIVADRVLSNLNNDVSLGKVRLRSFSRIPGK 180

Query: 226 VKLLHLIGRNVVVKMNCSFMINIF 250
           VKLLHLIGRNVVVKMNC+F+INIF
Sbjct: 181 VKLLHLIGRNVVVKMNCTFVINIF 204

[Close]

BLAST of Clc06G03640 vs. ExPASy TrEMBL
Match: A0A6J1L0R6 (uncharacterized protein LOC111499318 OS=Cucurbita maxima OX=3661 GN=LOC111499318 PE=4 SV=1)

HSP 1 Score: 318.2 bits (814), Expect = 3.3e-83
Identity = 166/219 (75.80%), Postives = 196/219 (89.50%), Query Frame = 0


Query: 46  MVDKDQAHPFASATHHRSSSDNGETKLYLKRIQRRRFIKCCSFIATLLIIPTIIIIIILM 105
           M DKDQA P A AT  R SSD+ + KL+LK+IQR RFIK   FI  LL+I ++++I+ILM
Sbjct: 1   MADKDQARPLALATDCRPSSDDYQEKLHLKKIQRIRFIKFFCFIICLLVILSVVVILILM 60

Query: 106 FTLFQIKDPIIQMNRISITKLELINDVIPKPGSNVSLTADVSVKNPNMASFKYSNTTTTL 165
           FTLFQ+KDPIIQMN+ISITKLELIN VIPKPGSNVSLTADVSVKNPN+ASFKYSNTTTTL
Sbjct: 61  FTLFQVKDPIIQMNKISITKLELINGVIPKPGSNVSLTADVSVKNPNVASFKYSNTTTTL 120

Query: 166 FINETVIGEARGPPGKAKARRTVRMNVSIDIVADRVLSNLDDDVSLGKVRLQSFSRIPGR 225
           +INETVIGEARGPPG+AKARRTVRMN++I+IV DR+L NL++D+S GK+RL+SFSR+PGR
Sbjct: 121 YINETVIGEARGPPGQAKARRTVRMNLTINIVVDRLLLNLNNDMSSGKLRLRSFSRVPGR 180

Query: 226 VKLLHLIGRNVVVKMNCSFMINIFNRSIEDQECKRKVKI 265
           VKLLH+I RN+VVKMNC+  INIFN+SIEDQ+CKRKVKI
Sbjct: 181 VKLLHIIRRNIVVKMNCTSTINIFNKSIEDQDCKRKVKI 219

[Close]

BLAST of Clc06G03640 vs. ExPASy TrEMBL
Match: A0A6J1H4K3 (uncharacterized protein LOC111460339 OS=Cucurbita moschata OX=3662 GN=LOC111460339 PE=4 SV=1)

HSP 1 Score: 315.8 bits (808), Expect = 1.7e-82
Identity = 166/219 (75.80%), Postives = 194/219 (88.58%), Query Frame = 0


Query: 46  MVDKDQAHPFASATHHRSSSDNGETKLYLKRIQRRRFIKCCSFIATLLIIPTIIIIIILM 105
           M DKDQA P A AT  R SSD+ + KL+LKRIQRRRFIK   FI  LLII ++ +I+IL+
Sbjct: 1   MADKDQARPLAPATDCRPSSDDYQEKLHLKRIQRRRFIKLFCFIIGLLIILSVGVILILI 60

Query: 106 FTLFQIKDPIIQMNRISITKLELINDVIPKPGSNVSLTADVSVKNPNMASFKYSNTTTTL 165
           FTLFQ+KDPIIQMN ISITKLELIN VIPKPGSNVSLTADVSVKNPN+ASFKYSNTTTTL
Sbjct: 61  FTLFQVKDPIIQMNNISITKLELINGVIPKPGSNVSLTADVSVKNPNVASFKYSNTTTTL 120

Query: 166 FINETVIGEARGPPGKAKARRTVRMNVSIDIVADRVLSNLDDDVSLGKVRLQSFSRIPGR 225
           +INETVIGEARGPPG+AKARRTVRMN++I+IV DR+L NL+ D+S GK+RL+SFSR+PGR
Sbjct: 121 YINETVIGEARGPPGQAKARRTVRMNLTINIVVDRLLLNLNSDMSSGKLRLRSFSRVPGR 180

Query: 226 VKLLHLIGRNVVVKMNCSFMINIFNRSIEDQECKRKVKI 265
           VK+LH++ RN+VVKMNC+  INIFN+SIEDQ+CKRKVKI
Sbjct: 181 VKVLHILRRNIVVKMNCTSTINIFNKSIEDQDCKRKVKI 219

[Close]

BLAST of Clc06G03640 vs. TAIR 10
Match: AT2G46150.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 160.2 bits (404), Expect = 2.2e-39
Identity = 95/226 (42.04%), Postives = 149/226 (65.93%), Query Frame = 0


Query: 46  MVDKDQAHPFASATHHRSSSDNGETKLYLKRIQR-RRFIKCCSFI-ATLLIIPTIIIIII 105
           M D +   P A AT    S ++      +K   R R  IKC   + AT LI+ T  I++ 
Sbjct: 1   MADSEHVRPLAPATILPVSDESASN---IKNTHRSRNRIKCSICVTATSLILTT--IVLT 60

Query: 106 LMFTLFQIKDPIIQMNRISITKLELI--NDVIPKPGSNVSLTADVSVKNPNMASFKYSNT 165
           L+FT+F++KDPII+MN + +  L+ +   + +   G+N+S+  DVSVKNPN ASFKYSNT
Sbjct: 61  LVFTVFRVKDPIIKMNGVMVNGLDSVTGTNQVQLLGTNISMIVDVSVKNPNTASFKYSNT 120

Query: 166 TTTLFINETVIGEARGPPGKAKARRTVRMNVSIDIVADRVLSN--LDDDVS-LGKVRLQS 225
           TT ++   T++GEA G PGKA+  RT RMNV++DI+ DR+LS+  L  ++S  G V + S
Sbjct: 121 TTDIYYKGTLVGEAHGLPGKARPHRTSRMNVTVDIMLDRILSDPGLGREISRSGLVNVWS 180

Query: 226 FSRIPGRVKLLHLIGRNVVVKMNCSFMINIFNRSIEDQECKRKVKI 265
           ++R+ G+VK++ ++ ++V VKMNC+  +NI  ++I+D +CK+K+ +
Sbjct: 181 YTRVGGKVKIMGIVKKHVTVKMNCTMAVNITGQAIQDVDCKKKIDL 221

[Close]

BLAST of Clc06G03640 vs. TAIR 10
Match: AT3G54200.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 108.6 bits (270), Expect = 7.7e-24
Identity = 70/214 (32.71%), Postives = 121/214 (56.54%), Query Frame = 0


Query: 54  PFASATHHRSSSDNGETKLYLKRIQRRRFIKCCSFIATLLIIPTIIIIIILMFTLFQIKD 113
           P  +A+   + S N  T    K+++R+R  K C     LLI+   I+I+IL FTLF+ K 
Sbjct: 25  PKPNASSMETQSANTGT---AKKLRRKRNCKICICFTILLILLIAIVIVILAFTLFKPKR 84

Query: 114 PIIQMNRISITKLEL-INDVIPKPGSNVSLTADVSVKNPNMASFKYSNTTTTLFINETVI 173
           P   ++ +++ +L+  +N ++ K   N++L  D+S+KNPN   F Y +++  L     VI
Sbjct: 85  PTTTIDSVTVDRLQASVNPLLLKVLLNLTLNVDLSLKNPNRIGFSYDSSSALLNYRGQVI 144

Query: 174 GEARGPPGKAKARRTVRMNVSIDIVADRVLS--NLDDDVSLGKVRLQSFSRIPGRVKLLH 233
           GEA  P  +  AR+TV +N+++ ++ADR+LS   L  DV  G + L +F ++ G+V +L 
Sbjct: 145 GEAPLPANRIAARKTVPLNITLTLMADRLLSETQLLSDVMAGVIPLNTFVKVTGKVTVLK 204

Query: 234 LIGRNVVVKMNCSFMINIFNRSIEDQECKRKVKI 265
           +    V    +C   I++ +R++  Q CK   K+
Sbjct: 205 IFKIKVQSSSSCDLSISVSDRNVTSQHCKYSTKL 235

[Close]

BLAST of Clc06G03640 vs. TAIR 10
Match: AT4G23610.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 69.3 bits (168), Expect = 5.2e-12
Identity = 57/210 (27.14%), Postives = 112/210 (53.33%), Query Frame = 0


Query: 43  AITMVDKDQAHPFASA-THHRSSSDNGETKLYLKRIQ----RRRFIKCCSFIATLLIIPT 102
           A++ +++DQA P A      RS   + E + +  R +    + + I CC FIA+L ++  
Sbjct: 4   AMSKINEDQAKPLAPLFLTTRSDQPDEEDQYHHDRTKYVHSQTKLILCCGFIASLTML-I 63

Query: 103 IIIIIILMFTLFQIKDPIIQMNRISIT-KLELINDVIPKPGSNVSLTADVSVKNPNMASF 162
            +  I+L  T+F +  P + ++ IS   + + +N  +     N +++ ++S+ NPN A F
Sbjct: 64  AVTFIVLSLTVFHLHSPNLTVDSISFNQRFDFVNGKV-NTNQNTTVSVEISLHNPNPALF 123

Query: 163 KYSNTTTTLFINE-TVIGEARGPPGKAKARRTVRMNVSIDIVADRVLSNLD---DDVSLG 222
              N   + +  E  V+GE+        A+RTV+MN++ +IV  ++L++L    +D++  
Sbjct: 124 IVKNVNVSFYHGELVVVGESIRRSETIPAKRTVKMNLTAEIVKTKLLASLPGLMEDLNGR 183

Query: 223 KVRLQSFSRIPGRVKLLHLIGRNVVVKMNC 243
            V L+S   + GRVK + +  + V ++ +C
Sbjct: 184 GVDLKSSVEVRGRVKKMKIFRKTVHLQTDC 211

[Close]

BLAST of Clc06G03640 vs. TAIR 10
Match: AT3G05975.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 66.2 bits (160), Expect = 4.4e-11
Identity = 42/183 (22.95%), Postives = 94/183 (51.37%), Query Frame = 0


Query: 85  CCSFIATLLIIPTIIIIIILMFTLFQIKDPIIQMNRISITKLELINDVIPKPGSNVSLTA 144
           CC     + ++  I +  +++  +F+ K PI+Q    ++  +     +  +   N +LT 
Sbjct: 7   CCIVSGIIFVLFVIFMTALILAQVFKPKHPILQTVSSTVDGISTNISLPYEVQLNFTLTL 66

Query: 145 DVSVKNPNMASFKYSNTTTTLFINETVIGEARGPPGKAKARRTVRMNVSIDIVADRVLSN 204
           ++ +KNPN+A F+Y      ++  +T++G    P     A+ +V +   + +  D+ ++N
Sbjct: 67  EMLLKNPNVADFEYKTVENLVYYRDTLVGNLTLPSSTLPAKGSVLLPCPLFLQLDKFVAN 126

Query: 205 LDD---DVSLGKVRLQSFSRIPGRVKLLHLIGRNVVVKMNCSFMINIFNRSIEDQECKRK 264
           L D   DV  GK+ +++ +++PG++ LL +    +    +C+ ++   +  +EDQ C  K
Sbjct: 127 LGDIVQDVLHGKIVMETRAKMPGKITLLGIFKIPLDSISHCNLVLGFPSMVVEDQVCDLK 186

[Close]

BLAST of Clc06G03640 vs. TAIR 10
Match: AT1G64450.1 (Glycine-rich protein family )

HSP 1 Score: 43.1 bits (100), Expect = 4.0e-04
Identity = 30/122 (24.59%), Postives = 64/122 (52.46%), Query Frame = 0


Query: 75  KRIQRRRFIKCCSFIATLLIIPTIIIIIILMFTLFQIKDPIIQMNRISITKLELINDVIP 134
           +R   R  +  C+ +AT+ ++  +++++++ FT+F+ KDP I +N + +    + N+   
Sbjct: 8   RRSSGRTNLASCA-VATVFLLILLVVLLVVYFTVFKPKDPKISVNAVQLPSFAVSNNT-- 67

Query: 135 KPGSNVSLTADVSVKNPNMASFKYSNTTTTLFINETVIGEARGPPGKAKARRTVRMNVSI 194
              +N S +  V+V+NPN A F + +++  L  +   +G    P GK  + R   M  + 
Sbjct: 68  ---ANFSFSQYVAVRNPNRAVFSHYDSSIQLLYSGNQVGFMFIPAGKIDSGRIQYMAATF 123

Query: 195 DI 197
            +
Sbjct: 128 TV 123

The following BLAST results are available for this feature:

BLAST of Clc06G03640 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038875202.1	6.2e-108	86.12	uncharacterized protein LOC120067718 [Benincasa hispida]	[more]
XP_008458164.1	2.4e-96	86.30	PREDICTED: uncharacterized protein LOC103497685 [Cucumis melo]	[more]
XP_011656360.1	9.3e-96	85.39	uncharacterized protein LOC105435724 [Cucumis sativus]	[more]
TYK14031.1	1.7e-89	87.75	Late embryogenesis abundant protein, LEA-14 [Cucumis melo var. makuwa]	[more]
KAG7013763.1	1.4e-83	76.26	Late embryogenesis abundant protein, partial [Cucurbita argyrosperma subsp. argy...	[more]

BLAST of Clc06G03640 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc06G03640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C8G8	1.2e-96	86.30	uncharacterized protein LOC103497685 OS=Cucumis melo OX=3656 GN=LOC103497685 PE=...	[more]
A0A0A0KD33	4.5e-96	85.39	LEA_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G006820 PE=4 ...	[more]
A0A5D3CQG2	8.2e-90	87.75	Late embryogenesis abundant protein, LEA-14 OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A6J1L0R6	3.3e-83	75.80	uncharacterized protein LOC111499318 OS=Cucurbita maxima OX=3661 GN=LOC111499318...	[more]
A0A6J1H4K3	1.7e-82	75.80	uncharacterized protein LOC111460339 OS=Cucurbita moschata OX=3662 GN=LOC1114603...	[more]

BLAST of Clc06G03640 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G46150.1	2.2e-39	42.04	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT3G54200.1	7.7e-24	32.71	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT4G23610.1	5.2e-12	27.14	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT3G05975.1	4.4e-11	22.95	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT1G64450.1	4.0e-04	24.59	Glycine-rich protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004864	Late embryogenesis abundant protein, LEA_2 subgroup	PFAM	PF03168	LEA_2	coord: 146..242 e-value: 3.5E-11 score: 43.5
None	No IPR available	GENE3D	2.60.40.1820		coord: 102..231 e-value: 1.7E-7 score: 33.1
None	No IPR available	PANTHER	PTHR31852	LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY	coord: 63..263
None	No IPR available	PANTHER	PTHR31852:SF212	LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY	coord: 63..263
None	No IPR available	SUPERFAMILY	117070	LEA14-like	coord: 108..207

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc06G03640.1	Clc06G03640.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032259	methylation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0043231	intracellular membrane-bounded organelle
molecular_function	GO:0008168	methyltransferase activity