Clc06G02630 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc06G02630
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	major pollen allergen Ole e 6-like
Location	ClcChr06: 2560329 .. 2561314 (-)
RNA-Seq Expression	Clc06G02630
Synteny	Clc06G02630

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACTGTAAAAAGGCACAATTCAAAGCTTAAGACAACAAAAAATTAAAGAGGAAATGGCCAAGAAAATGATTGCAGTGTTTTTGATGTGCATTTTGGTGGTGGCTGCTTTGCAGTTTTCCACTGCCAATGCAGAGGAAAAGGAGGACAAATATGAGGCCAAATTTGATGCCAAATACAAGTCTTGCTATGAAACTTGTGAGAAGGAATGTCTTGAAAGTGGCAATGGACAAAGCTTCTGTGAAGTTAAATGTGATGAAGATTGTGATGAAAAGGAAGTTGCTGGTACTCTCTCTTTTCCCTTTAATAATGTTATTATTAAAAGTATTGATATACTTAAATTTAAGTTTTTGAGTCAATCAAACTTGGTATCATAGTAGGAAGTCTAGTGTTCAAACATTGTAATATCGTTTTCCTCCCCAAAATTAACATTGATTTTTCACTTGATGAGTCTTCTACAAATTTTTAAACCCATAAGAAGGGAGGGTAAGATTTGGGCAAATCGGTTATTTAACACAGTACAAACCCATGCTTTGTTGGGTCTCTTACAAATTTTCATGCCTACAAGTTAGGGGAAGTGTGTTAAAATATCGATATAATATTAAATTTATCTTAACTCACAAGTTTAAGCTTTTGAATCAAAAGGGATTGCGCATTTTTAACGACGAATTTGAAACTTGTTGTATTTGTTTTGCAGATAAGCTCCAGATCAACATAGCACATTGAGCAATGGAGGATAAAAGAAAATAAGTGCCCTTGAGAAAATTTATCAGATTTATGTCAACAATTCTTACCATGTATTAGTATATTGAAATAATGTAGTTTGAGAGGGAGTTGATAAAGTTCCCTTTTTCCCTTTTTTTCTCTTTAATGAACTTTTTCCTCTTTCTTTTATAATAATGTGATTGAATATTTCAATTTTATAAAGTTCTAATGGGATTGTGAATGAACCATTTTTCACCATTATGTATTTATTATACAACAAAGATT

mRNA sequence

ACTGTAAAAAGGCACAATTCAAAGCTTAAGACAACAAAAAATTAAAGAGGAAATGGCCAAGAAAATGATTGCAGTGTTTTTGATGTGCATTTTGGTGGTGGCTGCTTTGCAGTTTTCCACTGCCAATGCAGAGGAAAAGGAGGACAAATATGAGGCCAAATTTGATGCCAAATACAAGTCTTGCTATGAAACTTGTGAGAAGGAATGTCTTGAAAGTGGCAATGGACAAAGCTTCTGTGAAGTTAAATGTGATGAAGATTGTGATGAAAAGGAAGTTGCTGATAAGCTCCAGATCAACATAGCACATTGAGCAATGGAGGATAAAAGAAAATAAGTGCCCTTGAGAAAATTTATCAGATTTATGTCAACAATTCTTACCATGTATTAGTATATTGAAATAATGTAGTTTGAGAGGGAGTTGATAAAGTTCCCTTTTTCCCTTTTTTTCTCTTTAATGAACTTTTTCCTCTTTCTTTTATAATAATGTGATTGAATATTTCAATTTTATAAAGTTCTAATGGGATTGTGAATGAACCATTTTTCACCATTATGTATTTATTATACAACAAAGATT

Coding sequence (CDS)

ATGGCCAAGAAAATGATTGCAGTGTTTTTGATGTGCATTTTGGTGGTGGCTGCTTTGCAGTTTTCCACTGCCAATGCAGAGGAAAAGGAGGACAAATATGAGGCCAAATTTGATGCCAAATACAAGTCTTGCTATGAAACTTGTGAGAAGGAATGTCTTGAAAGTGGCAATGGACAAAGCTTCTGTGAAGTTAAATGTGATGAAGATTGTGATGAAAAGGAAGTTGCTGATAAGCTCCAGATCAACATAGCACATTGA

Protein sequence

MAKKMIAVFLMCILVVAALQFSTANAEEKEDKYEAKFDAKYKSCYETCEKECLESGNGQSFCEVKCDEDCDEKEVADKLQINIAH

Homology

[Close]

BLAST of Clc06G02630 vs. NCBI nr
Match: XP_038906682.1 (major pollen allergen Ole e 6-like [Benincasa hispida])

HSP 1 Score: 141.0 bits (354), Expect = 4.8e-30
Identity = 72/85 (84.71%), Postives = 76/85 (89.41%), Query Frame = 0


Query: 1  MAKKMIAVFLMCILVVAALQFSTANAEEKEDKYEAKFDAKYKSCYETCEKECLESGNGQS 60
          MAKKMIAVFLMCI+V+AALQF+TAN  E+  KYEAKFDAKYKSCYETCEKECLE GNGQS
Sbjct: 1  MAKKMIAVFLMCIVVMAALQFTTAN--EEVAKYEAKFDAKYKSCYETCEKECLEKGNGQS 60

Query: 61 FCEVKCDEDCDEKEVADKLQINIAH 86
          FCEVKCDEDCDEKE ADKL I  AH
Sbjct: 61 FCEVKCDEDCDEKETADKLHIKPAH 83

[Close]

BLAST of Clc06G02630 vs. NCBI nr
Match: XP_038891517.1 (major pollen allergen Ole e 6-like [Benincasa hispida])

HSP 1 Score: 137.1 bits (344), Expect = 7.0e-29
Identity = 69/83 (83.13%), Postives = 77/83 (92.77%), Query Frame = 0


Query: 1  MAKKMIAVFLMCILVVAALQFSTANAEEKEDKYEAKFDAKYKSCYETCEKECLESGNGQS 60
          MAKKM+AVFLMCI+VVAALQF+TAN E++  KYEAKFDAKYKSCYETCEKECL +G+GQS
Sbjct: 1  MAKKMMAVFLMCIVVVAALQFATAN-EDEVTKYEAKFDAKYKSCYETCEKECLANGSGQS 60

Query: 61 FCEVKCDEDCDEKEVADKLQINI 84
          FCEVKCDEDCDEKEVADKL I +
Sbjct: 61 FCEVKCDEDCDEKEVADKLHIKL 82

[Close]

BLAST of Clc06G02630 vs. NCBI nr
Match: XP_016902456.1 (PREDICTED: carotenoid cleavage dioxygenase 7, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 136.0 bits (341), Expect = 1.6e-28
Identity = 67/86 (77.91%), Postives = 80/86 (93.02%), Query Frame = 0


Query: 1   MAKKMIAVFLMCILVVAALQFSTANAEEKEDKYEAKFDAKYKSCYETCEKECLESG-NGQ 60
           MAKKM+ V L+CI+V+AAL+FS AN EEK+DKYE+KFDAKYKSCYE+CEKECL++G NGQ
Sbjct: 584 MAKKMMGVLLICIVVMAALEFSIANGEEKKDKYESKFDAKYKSCYESCEKECLQNGNNGQ 643

Query: 61  SFCEVKCDEDCDEKEVADKLQINIAH 86
           SFCEVKCDEDCDEKEVADKL+I+ A+
Sbjct: 644 SFCEVKCDEDCDEKEVADKLRIDPAN 669

[Close]

BLAST of Clc06G02630 vs. NCBI nr
Match: XP_038875643.1 (major pollen allergen Ole e 6-like [Benincasa hispida] >XP_038906512.1 major pollen allergen Ole e 6-like [Benincasa hispida])

HSP 1 Score: 136.0 bits (341), Expect = 1.6e-28
Identity = 68/83 (81.93%), Postives = 76/83 (91.57%), Query Frame = 0


Query: 1  MAKKMIAVFLMCILVVAALQFSTANAEEKEDKYEAKFDAKYKSCYETCEKECLESGNGQS 60
          MAKKMIAVF MCI+V+AALQF+TAN  E+ DKYEAKFDAKYKSCYETCEKECLE+G+GQ+
Sbjct: 1  MAKKMIAVFFMCIVVMAALQFATAN--EEVDKYEAKFDAKYKSCYETCEKECLENGSGQT 60

Query: 61 FCEVKCDEDCDEKEVADKLQINI 84
          FCEVKCDEDCDEKE ADKL I +
Sbjct: 61 FCEVKCDEDCDEKEKADKLHIEL 81

[Close]

BLAST of Clc06G02630 vs. NCBI nr
Match: KAA0039790.1 (carotenoid cleavage dioxygenase 7 [Cucumis melo var. makuwa] >TYK24707.1 carotenoid cleavage dioxygenase 7 [Cucumis melo var. makuwa])

HSP 1 Score: 136.0 bits (341), Expect = 1.6e-28
Identity = 67/86 (77.91%), Postives = 80/86 (93.02%), Query Frame = 0


Query: 1  MAKKMIAVFLMCILVVAALQFSTANAEEKEDKYEAKFDAKYKSCYETCEKECLESG-NGQ 60
          MAKKM+ V L+CI+V+AAL+FS AN EEK+DKYE+KFDAKYKSCYE+CEKECL++G NGQ
Sbjct: 1  MAKKMMGVLLICIVVMAALEFSIANGEEKKDKYESKFDAKYKSCYESCEKECLQNGNNGQ 60

Query: 61 SFCEVKCDEDCDEKEVADKLQINIAH 86
          SFCEVKCDEDCDEKEVADKL+I+ A+
Sbjct: 61 SFCEVKCDEDCDEKEVADKLRIDPAN 86

[Close]

BLAST of Clc06G02630 vs. ExPASy Swiss-Prot
Match: O24172 (Major pollen allergen Ole e 6 OS=Olea europaea OX=4146 GN=OLE6 PE=1 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 4.9e-09
Identity = 24/43 (55.81%), Postives = 34/43 (79.07%), Query Frame = 0


Query: 38 DAKYKSCYETCEKECLESGNGQSFCEVKCDEDCDEKEVADKLQ 81
          +A++K CY+TC KEC + GNG +FCE+KCD DC  K+V +KL+
Sbjct: 2  EAQFKECYDTCHKECSDKGNGFTFCEMKCDTDCSVKDVKEKLE 44

[Close]

BLAST of Clc06G02630 vs. ExPASy TrEMBL
Match: A0A5D3DM52 (Carotenoid cleavage dioxygenase 7 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G002640 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 7.5e-29
Identity = 67/86 (77.91%), Postives = 80/86 (93.02%), Query Frame = 0


Query: 1  MAKKMIAVFLMCILVVAALQFSTANAEEKEDKYEAKFDAKYKSCYETCEKECLESG-NGQ 60
          MAKKM+ V L+CI+V+AAL+FS AN EEK+DKYE+KFDAKYKSCYE+CEKECL++G NGQ
Sbjct: 1  MAKKMMGVLLICIVVMAALEFSIANGEEKKDKYESKFDAKYKSCYESCEKECLQNGNNGQ 60

Query: 61 SFCEVKCDEDCDEKEVADKLQINIAH 86
          SFCEVKCDEDCDEKEVADKL+I+ A+
Sbjct: 61 SFCEVKCDEDCDEKEVADKLRIDPAN 86

[Close]

BLAST of Clc06G02630 vs. ExPASy TrEMBL
Match: A0A1S4E2K0 (carotenoid cleavage dioxygenase 7, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=CCD7 PE=3 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 7.5e-29
Identity = 67/86 (77.91%), Postives = 80/86 (93.02%), Query Frame = 0


Query: 1   MAKKMIAVFLMCILVVAALQFSTANAEEKEDKYEAKFDAKYKSCYETCEKECLESG-NGQ 60
           MAKKM+ V L+CI+V+AAL+FS AN EEK+DKYE+KFDAKYKSCYE+CEKECL++G NGQ
Sbjct: 584 MAKKMMGVLLICIVVMAALEFSIANGEEKKDKYESKFDAKYKSCYESCEKECLQNGNNGQ 643

Query: 61  SFCEVKCDEDCDEKEVADKLQINIAH 86
           SFCEVKCDEDCDEKEVADKL+I+ A+
Sbjct: 644 SFCEVKCDEDCDEKEVADKLRIDPAN 669

[Close]

BLAST of Clc06G02630 vs. ExPASy TrEMBL
Match: A0A5D3BCS2 (Major pollen allergen Ole e 6-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold233G00230 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 9.9e-29
Identity = 65/83 (78.31%), Postives = 78/83 (93.98%), Query Frame = 0


Query: 1  MAKKMIAVFLMCILVVAALQFSTANAEEKEDKYEAKFDAKYKSCYETCEKECLESGNGQS 60
          MAKKMIA+FLMCI+VVAALQF++AN E++  KYEAKFDAKYKSC++TCEKECLE+G+GQS
Sbjct: 1  MAKKMIALFLMCIVVVAALQFASANKEDEVAKYEAKFDAKYKSCFKTCEKECLENGSGQS 60

Query: 61 FCEVKCDEDCDEKEVADKLQINI 84
          +CEVKCDEDC+EKEVADKL I +
Sbjct: 61 YCEVKCDEDCNEKEVADKLHIEL 83

[Close]

BLAST of Clc06G02630 vs. ExPASy TrEMBL
Match: A0A1S3C530 (major pollen allergen Ole e 6-like OS=Cucumis melo OX=3656 GN=LOC103496750 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 9.9e-29
Identity = 65/83 (78.31%), Postives = 78/83 (93.98%), Query Frame = 0


Query: 1  MAKKMIAVFLMCILVVAALQFSTANAEEKEDKYEAKFDAKYKSCYETCEKECLESGNGQS 60
          MAKKMIA+FLMCI+VVAALQF++AN E++  KYEAKFDAKYKSC++TCEKECLE+G+GQS
Sbjct: 1  MAKKMIALFLMCIVVVAALQFASANKEDEVAKYEAKFDAKYKSCFKTCEKECLENGSGQS 60

Query: 61 FCEVKCDEDCDEKEVADKLQINI 84
          +CEVKCDEDC+EKEVADKL I +
Sbjct: 61 YCEVKCDEDCNEKEVADKLHIEL 83

[Close]

BLAST of Clc06G02630 vs. ExPASy TrEMBL
Match: A0A0A0KFH6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G102480 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 5.4e-27
Identity = 61/84 (72.62%), Postives = 74/84 (88.10%), Query Frame = 0


Query: 1  MAKKMIAVFLMCILVVAALQFSTANAEEKEDKYEAKFDAKYKSCYETCEKECLESG-NGQ 60
          MAKKM+ V L+CI+++A L+FS  N EEKEDKYE+KFDA+YKSCYE+CEKECL +G NGQ
Sbjct: 1  MAKKMMGVLLICIVIMAVLEFSIVNGEEKEDKYESKFDARYKSCYESCEKECLTNGKNGQ 60

Query: 61 SFCEVKCDEDCDEKEVADKLQINI 84
          S+CEVKCDEDCDEKEVADKL + +
Sbjct: 61 SYCEVKCDEDCDEKEVADKLHVEV 84

The following BLAST results are available for this feature:

BLAST of Clc06G02630 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038906682.1	4.8e-30	84.71	major pollen allergen Ole e 6-like [Benincasa hispida]	[more]
XP_038891517.1	7.0e-29	83.13	major pollen allergen Ole e 6-like [Benincasa hispida]	[more]
XP_016902456.1	1.6e-28	77.91	PREDICTED: carotenoid cleavage dioxygenase 7, chloroplastic isoform X1 [Cucumis ...	[more]
XP_038875643.1	1.6e-28	81.93	major pollen allergen Ole e 6-like [Benincasa hispida] >XP_038906512.1 major pol...	[more]
KAA0039790.1	1.6e-28	77.91	carotenoid cleavage dioxygenase 7 [Cucumis melo var. makuwa] >TYK24707.1 caroten...	[more]

BLAST of Clc06G02630 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O24172	4.9e-09	55.81	Major pollen allergen Ole e 6 OS=Olea europaea OX=4146 GN=OLE6 PE=1 SV=1	[more]

BLAST of Clc06G02630 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DM52	7.5e-29	77.91	Carotenoid cleavage dioxygenase 7 OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S4E2K0	7.5e-29	77.91	carotenoid cleavage dioxygenase 7, chloroplastic isoform X1 OS=Cucumis melo OX=3...	[more]
A0A5D3BCS2	9.9e-29	78.31	Major pollen allergen Ole e 6-like OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3C530	9.9e-29	78.31	major pollen allergen Ole e 6-like OS=Cucumis melo OX=3656 GN=LOC103496750 PE=4 ...	[more]
A0A0A0KFH6	5.4e-27	72.62	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G102480 PE=4 SV=1	[more]

BLAST of Clc06G02630 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015333	Pollen allergen ole e 6	PFAM	PF09253	Ole_e_6	coord: 44..80 e-value: 1.6E-13 score: 50.4
IPR015333	Pollen allergen ole e 6	PANTHER	PTHR35632	MAJOR POLLEN ALLERGEN OLE E 6-LIKE	coord: 1..83
IPR036466	Pollen allergen ole e 6 superfamily	GENE3D	1.10.287.720	Pollen allergen ole e 6	coord: 38..82 e-value: 8.3E-17 score: 62.5
IPR036466	Pollen allergen ole e 6 superfamily	SUPERFAMILY	111388	Pollen allergen ole e 6	coord: 38..80
None	No IPR available	PANTHER	PTHR35632:SF5	SUBFAMILY NOT NAMED	coord: 1..83

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc06G02630.1	Clc06G02630.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016121	carotene catabolic process
biological_process	GO:0009733	response to auxin
biological_process	GO:0010223	secondary shoot formation
biological_process	GO:1901601	strigolactone biosynthetic process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen