Clc06G02480 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc06G02480
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	28 kDa ribonucleoprotein, chloroplastic
Location	ClcChr06: 2414702 .. 2416074 (-)
RNA-Seq Expression	Clc06G02480
Synteny	Clc06G02480

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAACCTTGCGACCTGCTTAACCTTCTCTTCTTCTTCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCTTTCTCTATGGATCCTCAAACATAAATCTCCAAATTACTCTACATTTAAACAACTGCATTCTTTCCCTTCATACATCCACTTTGACCACACGAAGCTCGTTTCTCTAAGGCATAACCATGGGGCTAGGTTTCCAGTGATTTTCACTGTTCTCGACAATGAATCTGCGCTTACAGAGGAGGTCATCATGGAAAGCGATGTTAAGAGCGAAGGCAGCGTTTCAAATCAGGAAGTGAAAAAGCAAGCACGTCCTTGTGAACTCTACGTTTGTAATTTGCCGAGGAGTTGCGACATTGCAGAGCTGGTCGAGATGTTTAAACCTTATGGCACAGTGTTGGCTGCTGAGGTAGATACGATTTTCTTTTGTCTTCCATATCTTCATGGTCTGCTCTGCTCATTCGTTTTAGTTTTCCACAACCATCTAATTGCTTCTATTTCTGCTTGGAGTTTCCTTAAACAATTAGTTTGAAAGTTAGGGCAAATTGAATTGGAATTCTGAAAGCTTTTTCCCGAATTTTGAACTTTGAATGCTGTTATAATCATTATTCTTGAAAGGCAGTCCTCGATTTGCTTATCTGCCTTGAGTAAAATGGAATGATCTCAAATGGTGATTATGTTTCTTTTCATGTTTTGAACGGTATTGATTTGTTTCTCTGTAATTTGGACTTAGGTTTCTCGGAATCCAGAGACAGGCATAAGCAAGGGATGTGGATATGTCACAATGGGTTCAATAAACTCCGCTAAAGTTTCAATTGCAGCATTAGATGGTTCTGTTAGTATCAAATCAAGTATAAGTTGTTTTAATCTTAGCTCATTCAGTATCATTCAAAGATGAAGTTTATTATTTTGAAGGATGTTGGTGGACGTGAAATGCGCGTTAGATTTGCTGTTGATATGAATCCCAAAAAGAGGAACCTTAATAACTTGCATTCATCACCCAAGAAGAATATAATATATGAAAGTCCTTACAAAGTATATATTGGAAATCTTGCTTGGGATGTCAAACCTGGAGATCTGAGGAACCTTTTTAGCAGATTTGGAACTGTGGTCAGTGCAAAAGTTTTGAATGATCGTAGAGCTGGAAAAAGCCGTGTTTACGGGTTTCTATCATTTTCTTCAGCGGCAGAGCGTGATGCAGCACTTTCTTTGGATGGAACCGTAAAATTCTCTCTATATATCCCTTGATGTTTGACTTTTGGATTCCATTTTGTTATTATTGAACATTTTACTCTTTCATTGTAGGAGTTCAACAACAGAAAACTTGTTGTTAGAGAAGGTATGGAAAGGAACGAGTCTTAG

mRNA sequence

ATGGCCAACCTTGCGACCTGCTTAACCTTCTCTTCTTCTTCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCTTTCTCTATGGATCCTCAAACATAAATCTCCAAATTACTCTACATTTAAACAACTGCATTCTTTCCCTTCATACATCCACTTTGACCACACGAAGCTCGTTTCTCTAAGGCATAACCATGGGGCTAGGTTTCCAGTGATTTTCACTGTTCTCGACAATGAATCTGCGCTTACAGAGGAGGTCATCATGGAAAGCGATGTTAAGAGCGAAGGCAGCGTTTCAAATCAGGAAGTGAAAAAGCAAGCACGTCCTTGTGAACTCTACGTTTGTAATTTGCCGAGGAGTTGCGACATTGCAGAGCTGGTCGAGATGTTTAAACCTTATGGCACAGTGTTGGCTGCTGAGGTTTCTCGGAATCCAGAGACAGGCATAAGCAAGGGATGTGGATATGTCACAATGGGTTCAATAAACTCCGCTAAAGTTTCAATTGCAGCATTAGATGGTTCTGATGTTGGTGGACGTGAAATGCGCGTTAGATTTGCTGTTGATATGAATCCCAAAAAGAGGAACCTTAATAACTTGCATTCATCACCCAAGAAGAATATAATATATGAAAGTCCTTACAAAGTATATATTGGAAATCTTGCTTGGGATGTCAAACCTGGAGATCTGAGGAACCTTTTTAGCAGATTTGGAACTGTGGTCAGTGCAAAAGTTTTGAATGATCGTAGAGCTGGAAAAAGCCGTGTTTACGGGTTTCTATCATTTTCTTCAGCGGCAGAGCGTGATGCAGCACTTTCTTTGGATGGAACCGAGTTCAACAACAGAAAACTTGTTGTTAGAGAAGGTATGGAAAGGAACGAGTCTTAG

Coding sequence (CDS)

ATGGCCAACCTTGCGACCTGCTTAACCTTCTCTTCTTCTTCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCTTTCTCTATGGATCCTCAAACATAAATCTCCAAATTACTCTACATTTAAACAACTGCATTCTTTCCCTTCATACATCCACTTTGACCACACGAAGCTCGTTTCTCTAAGGCATAACCATGGGGCTAGGTTTCCAGTGATTTTCACTGTTCTCGACAATGAATCTGCGCTTACAGAGGAGGTCATCATGGAAAGCGATGTTAAGAGCGAAGGCAGCGTTTCAAATCAGGAAGTGAAAAAGCAAGCACGTCCTTGTGAACTCTACGTTTGTAATTTGCCGAGGAGTTGCGACATTGCAGAGCTGGTCGAGATGTTTAAACCTTATGGCACAGTGTTGGCTGCTGAGGTTTCTCGGAATCCAGAGACAGGCATAAGCAAGGGATGTGGATATGTCACAATGGGTTCAATAAACTCCGCTAAAGTTTCAATTGCAGCATTAGATGGTTCTGATGTTGGTGGACGTGAAATGCGCGTTAGATTTGCTGTTGATATGAATCCCAAAAAGAGGAACCTTAATAACTTGCATTCATCACCCAAGAAGAATATAATATATGAAAGTCCTTACAAAGTATATATTGGAAATCTTGCTTGGGATGTCAAACCTGGAGATCTGAGGAACCTTTTTAGCAGATTTGGAACTGTGGTCAGTGCAAAAGTTTTGAATGATCGTAGAGCTGGAAAAAGCCGTGTTTACGGGTTTCTATCATTTTCTTCAGCGGCAGAGCGTGATGCAGCACTTTCTTTGGATGGAACCGAGTTCAACAACAGAAAACTTGTTGTTAGAGAAGGTATGGAAAGGAACGAGTCTTAG

Protein sequence

MANLATCLTFSSSSSPSPSPSPSPSLSLWILKHKSPNYSTFKQLHSFPSYIHFDHTKLVSLRHNHGARFPVIFTVLDNESALTEEVIMESDVKSEGSVSNQEVKKQARPCELYVCNLPRSCDIAELVEMFKPYGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSIAALDGSDVGGREMRVRFAVDMNPKKRNLNNLHSSPKKNIIYESPYKVYIGNLAWDVKPGDLRNLFSRFGTVVSAKVLNDRRAGKSRVYGFLSFSSAAERDAALSLDGTEFNNRKLVVREGMERNES

Homology

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BLAST of Clc06G02480 vs. NCBI nr
Match: XP_038906862.1 (28 kDa ribonucleoprotein, chloroplastic [Benincasa hispida] >XP_038906863.1 28 kDa ribonucleoprotein, chloroplastic [Benincasa hispida])

HSP 1 Score: 530.0 bits (1364), Expect = 1.3e-146
Identity = 273/294 (92.86%), Postives = 280/294 (95.24%), Query Frame = 0


Query: 1   MANLATCLTFSSSSSPSPSPSPSPSLSLWILKHKSPNYSTFKQLHSFPSYIHFDHTKLVS 60
           MANLAT LTFSSSSS S S S  P  SLWILKHKSPNY +FK+LHSFPS  HFD TKLVS
Sbjct: 1   MANLATSLTFSSSSSSSSSSSSPP--SLWILKHKSPNYCSFKRLHSFPSSNHFDFTKLVS 60

Query: 61  LRHNHGARFPVIFTVLDNESALTEEVIMESDVKSEGSVSNQEVKKQARPCELYVCNLPRS 120
           LRHNHGARFPV+FTVL+NESALTEEVI E DVKSEGSVSNQEVKKQARPCELYVCNLPRS
Sbjct: 61  LRHNHGARFPVLFTVLENESALTEEVIAEGDVKSEGSVSNQEVKKQARPCELYVCNLPRS 120

Query: 121 CDIAELVEMFKPYGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSIAALDGSDVGGRE 180
           CDIAELVEMFKPYGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSIAALDGSDVGGRE
Sbjct: 121 CDIAELVEMFKPYGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSIAALDGSDVGGRE 180

Query: 181 MRVRFAVDMNPKKRNLNNLHSSPKKNIIYESPYKVYIGNLAWDVKPGDLRNLFSRFGTVV 240
           MRVRFAVDMNPKKRNLNNLHSSPKKNIIYESPYKVYIGNLAWDVKPGDLRNLFSRFGTVV
Sbjct: 181 MRVRFAVDMNPKKRNLNNLHSSPKKNIIYESPYKVYIGNLAWDVKPGDLRNLFSRFGTVV 240

Query: 241 SAKVLNDRRAGKSRVYGFLSFSSAAERDAALSLDGTEFNNRKLVVREGMERNES 295
           SAKVLNDRRAGKSRVYGFLSFSSAAERDAA+SLDGTE+NNRKLVVREG+ERNES
Sbjct: 241 SAKVLNDRRAGKSRVYGFLSFSSAAERDAAISLDGTEYNNRKLVVREGLERNES 292

[Close]

BLAST of Clc06G02480 vs. NCBI nr
Match: XP_004140529.1 (28 kDa ribonucleoprotein, chloroplastic [Cucumis sativus] >XP_011656820.1 28 kDa ribonucleoprotein, chloroplastic [Cucumis sativus] >XP_011656821.1 28 kDa ribonucleoprotein, chloroplastic [Cucumis sativus] >KGN46473.1 hypothetical protein Csa_005398 [Cucumis sativus])

HSP 1 Score: 516.9 bits (1330), Expect = 1.1e-142
Identity = 263/294 (89.46%), Postives = 275/294 (93.54%), Query Frame = 0


Query: 1   MANLATCLTFSSSSSPSPSPSPSPSLSLWILKHKSPNYSTFKQLHSFPSYIHFDHTKLVS 60
           MANLAT LTFSSSSSPSP        SLWILKHKSP+Y TFKQLHSF S  HFD+TKLVS
Sbjct: 1   MANLATSLTFSSSSSPSP--------SLWILKHKSPSYCTFKQLHSFHSSFHFDYTKLVS 60

Query: 61  LRHNHGARFPVIFTVLDNESALTEEVIMESDVKSEGSVSNQEVKKQARPCELYVCNLPRS 120
           LRHNHG RFPV+FTVLDNESALTEE I+E DVKSEGS+SNQEVKK ARPCELYVCNLPRS
Sbjct: 61  LRHNHGERFPVLFTVLDNESALTEEAIVEGDVKSEGSLSNQEVKKLARPCELYVCNLPRS 120

Query: 121 CDIAELVEMFKPYGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSIAALDGSDVGGRE 180
           CDIAELVEMFKPYGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSI ALDGSDVGGRE
Sbjct: 121 CDIAELVEMFKPYGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSITALDGSDVGGRE 180

Query: 181 MRVRFAVDMNPKKRNLNNLHSSPKKNIIYESPYKVYIGNLAWDVKPGDLRNLFSRFGTVV 240
           MRVRFAVDMN KKRNLNNLHSSPKKNIIYESPYKVY+GNL+WDVKPGDLRNLFSRFGTVV
Sbjct: 181 MRVRFAVDMNSKKRNLNNLHSSPKKNIIYESPYKVYVGNLSWDVKPGDLRNLFSRFGTVV 240

Query: 241 SAKVLNDRRAGKSRVYGFLSFSSAAERDAALSLDGTEFNNRKLVVREGMERNES 295
           SAKVLNDRRAGKSRVYGFLSFSSAAERDA++SLDGTE+NNRKLVVREG+ER+ES
Sbjct: 241 SAKVLNDRRAGKSRVYGFLSFSSAAERDASISLDGTEYNNRKLVVREGLERSES 286

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BLAST of Clc06G02480 vs. NCBI nr
Match: XP_008459818.1 (PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Cucumis melo] >XP_008459819.1 PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Cucumis melo] >XP_008459820.1 PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Cucumis melo] >KAA0039803.1 28 kDa ribonucleoprotein [Cucumis melo var. makuwa] >TYK24694.1 28 kDa ribonucleoprotein [Cucumis melo var. makuwa])

HSP 1 Score: 513.1 bits (1320), Expect = 1.6e-141
Identity = 262/294 (89.12%), Postives = 272/294 (92.52%), Query Frame = 0


Query: 1   MANLATCLTFSSSSSPSPSPSPSPSLSLWILKHKSPNYSTFKQLHSFPSYIHFDHTKLVS 60
           MANLAT LTFSSSSSP          SLWILKHKSPNY TFKQLHSFPS  HFD+TKLVS
Sbjct: 1   MANLATSLTFSSSSSP----------SLWILKHKSPNYCTFKQLHSFPSSFHFDYTKLVS 60

Query: 61  LRHNHGARFPVIFTVLDNESALTEEVIMESDVKSEGSVSNQEVKKQARPCELYVCNLPRS 120
           LRHNHG RFPV+FTVLDNESALTEE I+E DVKSE SVSNQEVKK ARPCELYVCNLPRS
Sbjct: 61  LRHNHGERFPVLFTVLDNESALTEEAIVEGDVKSESSVSNQEVKKLARPCELYVCNLPRS 120

Query: 121 CDIAELVEMFKPYGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSIAALDGSDVGGRE 180
           CDIAELVEMFKPYGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSIAALDGSDVGGRE
Sbjct: 121 CDIAELVEMFKPYGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSIAALDGSDVGGRE 180

Query: 181 MRVRFAVDMNPKKRNLNNLHSSPKKNIIYESPYKVYIGNLAWDVKPGDLRNLFSRFGTVV 240
           MRVRFAVDMNPK RNLNNL+SSPKKNIIYESPYKVY+GNL+WDV+PGDLRNLFSRFGTVV
Sbjct: 181 MRVRFAVDMNPKNRNLNNLNSSPKKNIIYESPYKVYVGNLSWDVQPGDLRNLFSRFGTVV 240

Query: 241 SAKVLNDRRAGKSRVYGFLSFSSAAERDAALSLDGTEFNNRKLVVREGMERNES 295
           SAKVLNDRRAGKSRVYGFLSFSSAAERDA++SLDGTEFN RKLVVREG ER+ES
Sbjct: 241 SAKVLNDRRAGKSRVYGFLSFSSAAERDASISLDGTEFNKRKLVVREGFERSES 284

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BLAST of Clc06G02480 vs. NCBI nr
Match: XP_022156980.1 (28 kDa ribonucleoprotein, chloroplastic [Momordica charantia])

HSP 1 Score: 452.2 bits (1162), Expect = 3.4e-123
Identity = 239/315 (75.87%), Postives = 260/315 (82.54%), Query Frame = 0


Query: 1   MANLATCLTFSSSSSPSPSPSPSPSLSLWILKHKSPNYSTFKQLHSFPSYIHFDHTKL-- 60
           MAN ATCLT SSSSS S S SP      WIL+     + T KQLHS PS IHF ++KL  
Sbjct: 1   MANAATCLTSSSSSSSSYSSSP------WILQQNPRKHCTLKQLHSLPSSIHFRYSKLSR 60

Query: 61  -------------------VSLRHNHGARFPVIFTVLDNESALTEEVIMESDVKSEGSVS 120
                               SL HN  ARF V+  +LD ESA+TEE I E DVKSEG+ S
Sbjct: 61  LVFVAPPLPCLSPVSSSPYCSLSHNRRARFSVLLAILDKESAVTEEAIEEDDVKSEGNAS 120

Query: 121 NQEVKKQARPCELYVCNLPRSCDIAELVEMFKPYGTVLAAEVSRNPETGISKGCGYVTMG 180
           NQEVKKQA+PCELYVCNLPR+CDIAELVEMFKP+GTVLAAEVSRNPETGISKGCGYVTMG
Sbjct: 121 NQEVKKQAQPCELYVCNLPRNCDIAELVEMFKPFGTVLAAEVSRNPETGISKGCGYVTMG 180

Query: 181 SINSAKVSIAALDGSDVGGREMRVRFAVDMNPKKRNLNNLHSSPKKNIIYESPYKVYIGN 240
           SINSAKVSIAALDGSDVGGREMRVRFAVDM+PKKRN+ NL+SSPKKNIIYESPYKVY+GN
Sbjct: 181 SINSAKVSIAALDGSDVGGREMRVRFAVDMSPKKRNIENLNSSPKKNIIYESPYKVYVGN 240

Query: 241 LAWDVKPGDLRNLFSRFGTVVSAKVLNDRRAGKSRVYGFLSFSSAAERDAALSLDGTEFN 295
           LAWDVKPGDLR+LFS+FGTVVSAKVLNDRRAGKSRVYGFLSFSSAAER+AA+SLDGTEFN
Sbjct: 241 LAWDVKPGDLRSLFSQFGTVVSAKVLNDRRAGKSRVYGFLSFSSAAEREAAISLDGTEFN 300

[Close]

BLAST of Clc06G02480 vs. NCBI nr
Match: XP_023513571.1 (28 kDa ribonucleoprotein, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023513572.1 28 kDa ribonucleoprotein, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 438.7 bits (1127), Expect = 3.9e-119
Identity = 236/315 (74.92%), Postives = 251/315 (79.68%), Query Frame = 0


Query: 1   MANLATCLTFSSSSSPSPSPSPSPSLSLWILKHKSPNYSTFKQLHSFPSYIHFDHTKLVS 60
           MAN A+CL+ SS SS S            IL  K  N    KQLHS PS IHFDH KL  
Sbjct: 1   MANAASCLSSSSLSSSSR-----------ILGQKFHNCFPLKQLHSLPSSIHFDHWKLSR 60

Query: 61  L---------------------RHNHGARFPVIFTVLDNESALTEEVIMESDVKSEGSVS 120
           L                     RHNH ARFPV+FTVLD E+A+T EVI E  VKSE SVS
Sbjct: 61  LVFVAPPMPCVSSSSSCSPRFFRHNHEARFPVLFTVLDQEAAVTGEVIEEDGVKSEDSVS 120

Query: 121 NQEVKKQARPCELYVCNLPRSCDIAELVEMFKPYGTVLAAEVSRNPETGISKGCGYVTMG 180
           NQEVK QARPCELYVCNLPRSCDIAELVEMFKPYGTVLAAEVSRNPETGISKGCGYVTMG
Sbjct: 121 NQEVKNQARPCELYVCNLPRSCDIAELVEMFKPYGTVLAAEVSRNPETGISKGCGYVTMG 180

Query: 181 SINSAKVSIAALDGSDVGGREMRVRFAVDMNPKKRNLNNLHSSPKKNIIYESPYKVYIGN 240
           SINSAKVSI ALD SDVGGREMRVRFAVDMNPK RN NNLHSSP+KNIIYESPYK+YIGN
Sbjct: 181 SINSAKVSITALDCSDVGGREMRVRFAVDMNPKMRNRNNLHSSPRKNIIYESPYKIYIGN 240

Query: 241 LAWDVKPGDLRNLFSRFGTVVSAKVLNDRRAGKSRVYGFLSFSSAAERDAALSLDGTEFN 295
           LAWDVKP DLRNLFS+FGTVVSAK+LNDRRAGKSR+YGFLSFSSAAERDAA+SL+GTEF 
Sbjct: 241 LAWDVKPEDLRNLFSQFGTVVSAKILNDRRAGKSRLYGFLSFSSAAERDAAISLNGTEFK 300

[Close]

BLAST of Clc06G02480 vs. ExPASy Swiss-Prot
Match: P28644 (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea OX=3562 PE=1 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 3.1e-26
Identity = 76/205 (37.07%), Postives = 111/205 (54.15%), Query Frame = 0


Query: 89  ESDVKSEGSV-SNQEVKKQARPCELYVCNLPRSCDIAELVEMFKPYGTVLAAEVSRNPET 148
           E+ V  EG V   Q   +     +L+V NLP   D  +L  +F   G V  AEV  N ET
Sbjct: 33  ETQVSDEGGVEGGQGFSEPPEEAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRET 92

Query: 149 GISKGCGYVTMGSINSAKVSIAALDGSDVGGREMRVRFAVDMNPKKRNLNNLHSSPKKNI 208
             S+G G+VTM ++  A+ ++  L+G D+ GR++ V  A      +R       +P+ + 
Sbjct: 93  DRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAPRGSPER-------APRGD- 152

Query: 209 IYESPYKVYIGNLAWDVKPGDLRNLFSRFGTVVSAKVLNDRRAGKSRVYGFLSFSSAAE- 268
            +E   +VY+GNL WDV    L  LFS  G VVSA+V++DR  G+SR +GF++ SS +E 
Sbjct: 153 -FEPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEV 212

Query: 269 RDAALSLDGTEFNNRKLVVREGMER 292
            DA  +LDG   + R + V    ER
Sbjct: 213 NDAIAALDGQTLDGRAVRVNVAEER 228

[Close]

BLAST of Clc06G02480 vs. ExPASy Swiss-Prot
Match: Q04836 (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP31A PE=1 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.6e-25
Identity = 78/216 (36.11%), Postives = 116/216 (53.70%), Query Frame = 0


Query: 78  NESALTEEVIMESDVKSEGSVSNQ-EVKKQARPCELYVCNLPRSCDIAELVEMFKPYGTV 137
           +E  ++E    E DV SEG+VS + E  + +   +L+V NL    +   L  +F+  GTV
Sbjct: 118 SEGDVSEGDESEGDV-SEGAVSERAEFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTV 177

Query: 138 LAAEVSRNPETGISKGCGYVTMGSINSAKVSIAALDGSDVGGREMRVRFAVDMNPKKRNL 197
             AEV  N ET  S+G G+VTM S++ A+ ++   +  D+ GR + V  A     +    
Sbjct: 178 EIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPER- 237

Query: 198 NNLHSSPKKNIIYESPYKVYIGNLAWDVKPGDLRNLFSRFGTVVSAKVLNDRRAGKSRVY 257
                +P+   +YE  ++VY+GNL WDV  G L  LFS  G VV A+V+ DR  G+SR +
Sbjct: 238 -----APR---VYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGF 297

Query: 258 GFLSFSSAAERDAALS-LDGTEFNNRKLVVREGMER 292
           GF++ S   E + A+S LDG     R + V    ER
Sbjct: 298 GFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEER 323

[Close]

BLAST of Clc06G02480 vs. ExPASy Swiss-Prot
Match: Q08935 (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.3e-24
Identity = 99/290 (34.14%), Postives = 142/290 (48.97%), Query Frame = 0


Query: 1   MANLATCLTFSS---SSSPSPSP-SPSPSLSLWILKHKSPNYSTFKQLHSFPSYIHFDHT 60
           MA+ A+ L F S    + P P P S + SLS + L   S N S    L S  S       
Sbjct: 1   MASSASSLHFLSLTPQTLPLPKPTSQTTSLSFFSLPPSSLNLS----LSSSSSCFSSRFV 60

Query: 61  KLVSLRHNHGARFPVIFTVLDNESALTEEVIMESDVKSEGSVSNQEVKKQARPCELYVCN 120
           + V+L     + F  I  V D +  + EE     D+K                  ++V N
Sbjct: 61  RKVTL-----SDFDQIEDVEDGDDGVEEERNFSPDLK------------------IFVGN 120

Query: 121 LPRSCDIAELVEMFKPYGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSIAALDGSDV 180
           LP S D A L E+F+  G V   EV  +  TG S+G G+VTM S    + +    +G ++
Sbjct: 121 LPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYEL 180

Query: 181 GGREMRVRFAVDMNPKKRNLNNLHSSPKKNIIYESPYKVYIGNLAWDVKPGDLRNLFSRF 240
            GR +RV       P+KR  ++     +    ++S  +VY+GNLAW V    L  LFS  
Sbjct: 181 DGRALRVNSGPP--PEKRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQ 240

Query: 241 GTVVSAKVLNDRRAGKSRVYGFLSFSSAAERDAAL-SLDGTEFNNRKLVV 286
           G VV AKV+ DR +G+SR +GF+++SSA E + A+ SLDG + N R + V
Sbjct: 241 GKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRV 261

[Close]

BLAST of Clc06G02480 vs. ExPASy Swiss-Prot
Match: Q9FGS0 (RNA-binding protein CP31B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP31B PE=1 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.7e-24
Identity = 68/207 (32.85%), Postives = 110/207 (53.14%), Query Frame = 0


Query: 86  VIMESDVKSEGSVSNQEVKKQARPCELYVCNLPRSCDIAELVEMFKPYGTVLAAEVSRNP 145
           V ++   +SE  V   E  ++A+   L+V NLP   D   L  +F+  GTV  +EV  N 
Sbjct: 92  VTVDESFESEDGVGFPEPPEEAK---LFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNR 151

Query: 146 ETGISKGCGYVTMGSINSAKVSIAALDGSDVGGREMRVRFAVDMNPKKRNLNNLHSSPKK 205
           +T  S+G G+VTM ++  A+ ++   +  +V GR + V  A     +           ++
Sbjct: 152 DTDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRAAPRGSRPE---------RQ 211

Query: 206 NIIYESPYKVYIGNLAWDVKPGDLRNLFSRFGTVVSAKVLNDRRAGKSRVYGFLSFSSAA 265
             +Y++ +++Y+GNL WDV  G L  LFS  G VV A+V++DR  G+SR +GF+  S+  
Sbjct: 212 PRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNEN 271

Query: 266 ERDAAL-SLDGTEFNNRKLVVREGMER 292
           E + A+ +LDG     R + V    ER
Sbjct: 272 EVNVAIAALDGQNLEGRAIKVNVAEER 286

[Close]

BLAST of Clc06G02480 vs. ExPASy Swiss-Prot
Match: Q39061 (RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP33 PE=2 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 2.2e-24
Identity = 73/225 (32.44%), Postives = 117/225 (52.00%), Query Frame = 0


Query: 77  DNESALTEEVIMESDVKSEGSVSNQEVKKQARPCE-------LYVCNLPRSCDIAELVEM 136
           D   A  EE   E +V+ EG    +EV+++ +  +       LYV NLP +   +EL ++
Sbjct: 79  DEIQASVEE---EEEVEEEGDEGEEEVEEEKQTTQASGEEGRLYVGNLPYTITSSELSQI 138

Query: 137 FKPYGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSIAALDGSDVGGREMRVRFAVDM 196
           F   GTV+  ++  +  T  S+G G+VTMGSI  AK ++   + S +GGR ++V F    
Sbjct: 139 FGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGGRTVKVNFPEVP 198

Query: 197 NPKKRNLNNLHSSPKKNIIYESPYKVYIGNLAWDVKPGDLRNLFSRFGTVVSAKVLNDRR 256
              +  +             +SP+KVY GNL W++    L++ F     V+ AKV+ +R 
Sbjct: 199 RGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERN 258

Query: 257 AGKSRVYGFLSFSSAAERDAAL-SLDGTEFNNRKLVVREGMERNE 294
            G+SR +GF+SF SA    +AL +++G E   R L +    ER +
Sbjct: 259 TGRSRGFGFISFESAENVQSALATMNGVEVEGRALRLNLASEREK 300

[Close]

BLAST of Clc06G02480 vs. ExPASy TrEMBL
Match: A0A0A0KAH9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G095890 PE=4 SV=1)

HSP 1 Score: 516.9 bits (1330), Expect = 5.4e-143
Identity = 263/294 (89.46%), Postives = 275/294 (93.54%), Query Frame = 0


Query: 1   MANLATCLTFSSSSSPSPSPSPSPSLSLWILKHKSPNYSTFKQLHSFPSYIHFDHTKLVS 60
           MANLAT LTFSSSSSPSP        SLWILKHKSP+Y TFKQLHSF S  HFD+TKLVS
Sbjct: 1   MANLATSLTFSSSSSPSP--------SLWILKHKSPSYCTFKQLHSFHSSFHFDYTKLVS 60

Query: 61  LRHNHGARFPVIFTVLDNESALTEEVIMESDVKSEGSVSNQEVKKQARPCELYVCNLPRS 120
           LRHNHG RFPV+FTVLDNESALTEE I+E DVKSEGS+SNQEVKK ARPCELYVCNLPRS
Sbjct: 61  LRHNHGERFPVLFTVLDNESALTEEAIVEGDVKSEGSLSNQEVKKLARPCELYVCNLPRS 120

Query: 121 CDIAELVEMFKPYGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSIAALDGSDVGGRE 180
           CDIAELVEMFKPYGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSI ALDGSDVGGRE
Sbjct: 121 CDIAELVEMFKPYGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSITALDGSDVGGRE 180

Query: 181 MRVRFAVDMNPKKRNLNNLHSSPKKNIIYESPYKVYIGNLAWDVKPGDLRNLFSRFGTVV 240
           MRVRFAVDMN KKRNLNNLHSSPKKNIIYESPYKVY+GNL+WDVKPGDLRNLFSRFGTVV
Sbjct: 181 MRVRFAVDMNSKKRNLNNLHSSPKKNIIYESPYKVYVGNLSWDVKPGDLRNLFSRFGTVV 240

Query: 241 SAKVLNDRRAGKSRVYGFLSFSSAAERDAALSLDGTEFNNRKLVVREGMERNES 295
           SAKVLNDRRAGKSRVYGFLSFSSAAERDA++SLDGTE+NNRKLVVREG+ER+ES
Sbjct: 241 SAKVLNDRRAGKSRVYGFLSFSSAAERDASISLDGTEYNNRKLVVREGLERSES 286

[Close]

BLAST of Clc06G02480 vs. ExPASy TrEMBL
Match: A0A1S3CB56 (28 kDa ribonucleoprotein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103498833 PE=4 SV=1)

HSP 1 Score: 513.1 bits (1320), Expect = 7.9e-142
Identity = 262/294 (89.12%), Postives = 272/294 (92.52%), Query Frame = 0


Query: 1   MANLATCLTFSSSSSPSPSPSPSPSLSLWILKHKSPNYSTFKQLHSFPSYIHFDHTKLVS 60
           MANLAT LTFSSSSSP          SLWILKHKSPNY TFKQLHSFPS  HFD+TKLVS
Sbjct: 1   MANLATSLTFSSSSSP----------SLWILKHKSPNYCTFKQLHSFPSSFHFDYTKLVS 60

Query: 61  LRHNHGARFPVIFTVLDNESALTEEVIMESDVKSEGSVSNQEVKKQARPCELYVCNLPRS 120
           LRHNHG RFPV+FTVLDNESALTEE I+E DVKSE SVSNQEVKK ARPCELYVCNLPRS
Sbjct: 61  LRHNHGERFPVLFTVLDNESALTEEAIVEGDVKSESSVSNQEVKKLARPCELYVCNLPRS 120

Query: 121 CDIAELVEMFKPYGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSIAALDGSDVGGRE 180
           CDIAELVEMFKPYGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSIAALDGSDVGGRE
Sbjct: 121 CDIAELVEMFKPYGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSIAALDGSDVGGRE 180

Query: 181 MRVRFAVDMNPKKRNLNNLHSSPKKNIIYESPYKVYIGNLAWDVKPGDLRNLFSRFGTVV 240
           MRVRFAVDMNPK RNLNNL+SSPKKNIIYESPYKVY+GNL+WDV+PGDLRNLFSRFGTVV
Sbjct: 181 MRVRFAVDMNPKNRNLNNLNSSPKKNIIYESPYKVYVGNLSWDVQPGDLRNLFSRFGTVV 240

Query: 241 SAKVLNDRRAGKSRVYGFLSFSSAAERDAALSLDGTEFNNRKLVVREGMERNES 295
           SAKVLNDRRAGKSRVYGFLSFSSAAERDA++SLDGTEFN RKLVVREG ER+ES
Sbjct: 241 SAKVLNDRRAGKSRVYGFLSFSSAAERDASISLDGTEFNKRKLVVREGFERSES 284

[Close]

BLAST of Clc06G02480 vs. ExPASy TrEMBL
Match: A0A5D3DM74 (28 kDa ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G002470 PE=4 SV=1)

HSP 1 Score: 513.1 bits (1320), Expect = 7.9e-142
Identity = 262/294 (89.12%), Postives = 272/294 (92.52%), Query Frame = 0


Query: 1   MANLATCLTFSSSSSPSPSPSPSPSLSLWILKHKSPNYSTFKQLHSFPSYIHFDHTKLVS 60
           MANLAT LTFSSSSSP          SLWILKHKSPNY TFKQLHSFPS  HFD+TKLVS
Sbjct: 1   MANLATSLTFSSSSSP----------SLWILKHKSPNYCTFKQLHSFPSSFHFDYTKLVS 60

Query: 61  LRHNHGARFPVIFTVLDNESALTEEVIMESDVKSEGSVSNQEVKKQARPCELYVCNLPRS 120
           LRHNHG RFPV+FTVLDNESALTEE I+E DVKSE SVSNQEVKK ARPCELYVCNLPRS
Sbjct: 61  LRHNHGERFPVLFTVLDNESALTEEAIVEGDVKSESSVSNQEVKKLARPCELYVCNLPRS 120

Query: 121 CDIAELVEMFKPYGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSIAALDGSDVGGRE 180
           CDIAELVEMFKPYGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSIAALDGSDVGGRE
Sbjct: 121 CDIAELVEMFKPYGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSIAALDGSDVGGRE 180

Query: 181 MRVRFAVDMNPKKRNLNNLHSSPKKNIIYESPYKVYIGNLAWDVKPGDLRNLFSRFGTVV 240
           MRVRFAVDMNPK RNLNNL+SSPKKNIIYESPYKVY+GNL+WDV+PGDLRNLFSRFGTVV
Sbjct: 181 MRVRFAVDMNPKNRNLNNLNSSPKKNIIYESPYKVYVGNLSWDVQPGDLRNLFSRFGTVV 240

Query: 241 SAKVLNDRRAGKSRVYGFLSFSSAAERDAALSLDGTEFNNRKLVVREGMERNES 295
           SAKVLNDRRAGKSRVYGFLSFSSAAERDA++SLDGTEFN RKLVVREG ER+ES
Sbjct: 241 SAKVLNDRRAGKSRVYGFLSFSSAAERDASISLDGTEFNKRKLVVREGFERSES 284

[Close]

BLAST of Clc06G02480 vs. ExPASy TrEMBL
Match: A0A6J1DRW5 (28 kDa ribonucleoprotein, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111023809 PE=4 SV=1)

HSP 1 Score: 452.2 bits (1162), Expect = 1.6e-123
Identity = 239/315 (75.87%), Postives = 260/315 (82.54%), Query Frame = 0


Query: 1   MANLATCLTFSSSSSPSPSPSPSPSLSLWILKHKSPNYSTFKQLHSFPSYIHFDHTKL-- 60
           MAN ATCLT SSSSS S S SP      WIL+     + T KQLHS PS IHF ++KL  
Sbjct: 1   MANAATCLTSSSSSSSSYSSSP------WILQQNPRKHCTLKQLHSLPSSIHFRYSKLSR 60

Query: 61  -------------------VSLRHNHGARFPVIFTVLDNESALTEEVIMESDVKSEGSVS 120
                               SL HN  ARF V+  +LD ESA+TEE I E DVKSEG+ S
Sbjct: 61  LVFVAPPLPCLSPVSSSPYCSLSHNRRARFSVLLAILDKESAVTEEAIEEDDVKSEGNAS 120

Query: 121 NQEVKKQARPCELYVCNLPRSCDIAELVEMFKPYGTVLAAEVSRNPETGISKGCGYVTMG 180
           NQEVKKQA+PCELYVCNLPR+CDIAELVEMFKP+GTVLAAEVSRNPETGISKGCGYVTMG
Sbjct: 121 NQEVKKQAQPCELYVCNLPRNCDIAELVEMFKPFGTVLAAEVSRNPETGISKGCGYVTMG 180

Query: 181 SINSAKVSIAALDGSDVGGREMRVRFAVDMNPKKRNLNNLHSSPKKNIIYESPYKVYIGN 240
           SINSAKVSIAALDGSDVGGREMRVRFAVDM+PKKRN+ NL+SSPKKNIIYESPYKVY+GN
Sbjct: 181 SINSAKVSIAALDGSDVGGREMRVRFAVDMSPKKRNIENLNSSPKKNIIYESPYKVYVGN 240

Query: 241 LAWDVKPGDLRNLFSRFGTVVSAKVLNDRRAGKSRVYGFLSFSSAAERDAALSLDGTEFN 295
           LAWDVKPGDLR+LFS+FGTVVSAKVLNDRRAGKSRVYGFLSFSSAAER+AA+SLDGTEFN
Sbjct: 241 LAWDVKPGDLRSLFSQFGTVVSAKVLNDRRAGKSRVYGFLSFSSAAEREAAISLDGTEFN 300

[Close]

BLAST of Clc06G02480 vs. ExPASy TrEMBL
Match: A0A6J1H6A5 (28 kDa ribonucleoprotein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111460593 PE=4 SV=1)

HSP 1 Score: 436.8 bits (1122), Expect = 7.2e-119
Identity = 237/315 (75.24%), Postives = 252/315 (80.00%), Query Frame = 0


Query: 1   MANLATCLTFSSSSSPSPSPSPSPSLSLWILKHKSPNYSTFKQLHSFPSYIHFDHTKL-- 60
           MAN A+CL+ SS SS S            IL  K  N    KQLHS PS IHFDH KL  
Sbjct: 1   MANAASCLSSSSLSSSSR-----------ILGQKFHNCFPLKQLHSLPSSIHFDHWKLSR 60

Query: 61  ----------VS---------LRHNHGARFPVIFTVLDNESALTEEVIMESDVKSEGSVS 120
                     VS         LRH HGARFPVIFTVLD E+A+T EVI E  VKSE SVS
Sbjct: 61  LVFVAPPMPCVSSSSSCSPRFLRHKHGARFPVIFTVLDQEAAITAEVIEEDGVKSEDSVS 120

Query: 121 NQEVKKQARPCELYVCNLPRSCDIAELVEMFKPYGTVLAAEVSRNPETGISKGCGYVTMG 180
           NQEVK  ARPCELYVCNLPRSCDIAELVEMFKP+GTVLAAEVSRNPETGISKGCGYVTMG
Sbjct: 121 NQEVKNLARPCELYVCNLPRSCDIAELVEMFKPFGTVLAAEVSRNPETGISKGCGYVTMG 180

Query: 181 SINSAKVSIAALDGSDVGGREMRVRFAVDMNPKKRNLNNLHSSPKKNIIYESPYKVYIGN 240
           SINSAKVSI ALD SDVGGREMRVRFAVDMNPK RN NNLHSSP+KNIIYESPYK+YIGN
Sbjct: 181 SINSAKVSITALDCSDVGGREMRVRFAVDMNPKMRNRNNLHSSPRKNIIYESPYKIYIGN 240

Query: 241 LAWDVKPGDLRNLFSRFGTVVSAKVLNDRRAGKSRVYGFLSFSSAAERDAALSLDGTEFN 295
           LAWDVKP DLRNLFS+FGTVVSAK+LNDRRAGKSR+YGFLSFSSAAERDAA+SL+GTEF 
Sbjct: 241 LAWDVKPEDLRNLFSQFGTVVSAKILNDRRAGKSRLYGFLSFSSAAERDAAISLNGTEFK 300

[Close]

BLAST of Clc06G02480 vs. TAIR 10
Match: AT1G01080.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 265.4 bits (677), Expect = 5.5e-71
Identity = 150/296 (50.68%), Postives = 205/296 (69.26%), Query Frame = 0


Query: 5   ATCLTFSSSSSPSPSPSPSPSLSLWILKHKSPNYSTFKQLH-SFPSYIHFDHTKLVSLRH 64
           A+C     SSS   S +  P     I    S +YS  + L   F S   F H+ L     
Sbjct: 3   ASCFAIPLSSSSRSSHNAIPKYKTLI---SSSSYSYLESLKLQFSSSNSFHHSSLSRPFV 62

Query: 65  NHGARFPVI---FTVLDNESALTEEVIM-ESDVKSEGSVSNQEVKKQARPCELYVCNLPR 124
               +  V     +VLD E    EEV+  E++   +  VS  E  K+ RPCELYVCN+PR
Sbjct: 63  AQPLQIKVSSSELSVLDEEK--EEEVVKGEAEPNKDSVVSKAEPVKKPRPCELYVCNIPR 122

Query: 125 SCDIAELVEMFKPYGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSIAALDGSDVGGR 184
           S DIA+L++MF+P+GTV++ EVSRNP+TG S+G GYVTMGSINSAK++IA+LDG++VGGR
Sbjct: 123 SYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIASLDGTEVGGR 182

Query: 185 EMRVRFAVDMNP-KKRNLNNLHSSPKKNIIYESPYKVYIGNLAWDVKPGDLRNLFSRFGT 244
           EMRVR++VDMNP  +RN   L+S+PKK ++YES +KVY+GNL W  +P  LRN FS+FGT
Sbjct: 183 EMRVRYSVDMNPGTRRNPEVLNSTPKKILMYESQHKVYVGNLPWFTQPDGLRNHFSKFGT 242

Query: 245 VVSAKVLNDRRAGKSRVYGFLSFSSAAERDAALSLDGTEFNNRKLVVREGMERNES 295
           +VS +VL+DR+ G++RV+ FLSF+S  ERDAALS +GT++  R+++VREG+E++ES
Sbjct: 243 IVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALSFNGTQYEGRRIIVREGIEKSES 293

[Close]

BLAST of Clc06G02480 vs. TAIR 10
Match: AT1G01080.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 260.8 bits (665), Expect = 1.4e-69
Identity = 150/297 (50.51%), Postives = 205/297 (69.02%), Query Frame = 0


Query: 5   ATCLTFSSSSSPSPSPSPSPSLSLWILKHKSPNYSTFKQLH-SFPSYIHFDHTKLVSLRH 64
           A+C     SSS   S +  P     I    S +YS  + L   F S   F H+ L     
Sbjct: 3   ASCFAIPLSSSSRSSHNAIPKYKTLI---SSSSYSYLESLKLQFSSSNSFHHSSLSRPFV 62

Query: 65  NHGARFPVI---FTVLDNESALTEEVIM-ESDVKSEGSVSNQEVKKQARPCELYVCNLPR 124
               +  V     +VLD E    EEV+  E++   +  VS  E  K+ RPCELYVCN+PR
Sbjct: 63  AQPLQIKVSSSELSVLDEEK--EEEVVKGEAEPNKDSVVSKAEPVKKPRPCELYVCNIPR 122

Query: 125 SCDIAELVEMFKPYGTVLAAE-VSRNPETGISKGCGYVTMGSINSAKVSIAALDGSDVGG 184
           S DIA+L++MF+P+GTV++ E VSRNP+TG S+G GYVTMGSINSAK++IA+LDG++VGG
Sbjct: 123 SYDIAQLLDMFQPFGTVISVEVVSRNPQTGESRGSGYVTMGSINSAKIAIASLDGTEVGG 182

Query: 185 REMRVRFAVDMNP-KKRNLNNLHSSPKKNIIYESPYKVYIGNLAWDVKPGDLRNLFSRFG 244
           REMRVR++VDMNP  +RN   L+S+PKK ++YES +KVY+GNL W  +P  LRN FS+FG
Sbjct: 183 REMRVRYSVDMNPGTRRNPEVLNSTPKKILMYESQHKVYVGNLPWFTQPDGLRNHFSKFG 242

Query: 245 TVVSAKVLNDRRAGKSRVYGFLSFSSAAERDAALSLDGTEFNNRKLVVREGMERNES 295
           T+VS +VL+DR+ G++RV+ FLSF+S  ERDAALS +GT++  R+++VREG+E++ES
Sbjct: 243 TIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALSFNGTQYEGRRIIVREGIEKSES 294

[Close]

BLAST of Clc06G02480 vs. TAIR 10
Match: AT4G24770.1 (31-kDa RNA binding protein )

HSP 1 Score: 117.5 bits (293), Expect = 1.8e-26
Identity = 78/216 (36.11%), Postives = 116/216 (53.70%), Query Frame = 0


Query: 78  NESALTEEVIMESDVKSEGSVSNQ-EVKKQARPCELYVCNLPRSCDIAELVEMFKPYGTV 137
           +E  ++E    E DV SEG+VS + E  + +   +L+V NL    +   L  +F+  GTV
Sbjct: 118 SEGDVSEGDESEGDV-SEGAVSERAEFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTV 177

Query: 138 LAAEVSRNPETGISKGCGYVTMGSINSAKVSIAALDGSDVGGREMRVRFAVDMNPKKRNL 197
             AEV  N ET  S+G G+VTM S++ A+ ++   +  D+ GR + V  A     +    
Sbjct: 178 EIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPER- 237

Query: 198 NNLHSSPKKNIIYESPYKVYIGNLAWDVKPGDLRNLFSRFGTVVSAKVLNDRRAGKSRVY 257
                +P+   +YE  ++VY+GNL WDV  G L  LFS  G VV A+V+ DR  G+SR +
Sbjct: 238 -----APR---VYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGF 297

Query: 258 GFLSFSSAAERDAALS-LDGTEFNNRKLVVREGMER 292
           GF++ S   E + A+S LDG     R + V    ER
Sbjct: 298 GFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEER 323

[Close]

BLAST of Clc06G02480 vs. TAIR 10
Match: AT5G50250.1 (chloroplast RNA-binding protein 31B )

HSP 1 Score: 114.8 bits (286), Expect = 1.2e-25
Identity = 68/207 (32.85%), Postives = 110/207 (53.14%), Query Frame = 0


Query: 86  VIMESDVKSEGSVSNQEVKKQARPCELYVCNLPRSCDIAELVEMFKPYGTVLAAEVSRNP 145
           V ++   +SE  V   E  ++A+   L+V NLP   D   L  +F+  GTV  +EV  N 
Sbjct: 92  VTVDESFESEDGVGFPEPPEEAK---LFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNR 151

Query: 146 ETGISKGCGYVTMGSINSAKVSIAALDGSDVGGREMRVRFAVDMNPKKRNLNNLHSSPKK 205
           +T  S+G G+VTM ++  A+ ++   +  +V GR + V  A     +           ++
Sbjct: 152 DTDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRAAPRGSRPE---------RQ 211

Query: 206 NIIYESPYKVYIGNLAWDVKPGDLRNLFSRFGTVVSAKVLNDRRAGKSRVYGFLSFSSAA 265
             +Y++ +++Y+GNL WDV  G L  LFS  G VV A+V++DR  G+SR +GF+  S+  
Sbjct: 212 PRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNEN 271

Query: 266 ERDAAL-SLDGTEFNNRKLVVREGMER 292
           E + A+ +LDG     R + V    ER
Sbjct: 272 EVNVAIAALDGQNLEGRAIKVNVAEER 286

[Close]

BLAST of Clc06G02480 vs. TAIR 10
Match: AT3G52380.1 (chloroplast RNA-binding protein 33 )

HSP 1 Score: 114.4 bits (285), Expect = 1.6e-25
Identity = 73/225 (32.44%), Postives = 117/225 (52.00%), Query Frame = 0


Query: 77  DNESALTEEVIMESDVKSEGSVSNQEVKKQARPCE-------LYVCNLPRSCDIAELVEM 136
           D   A  EE   E +V+ EG    +EV+++ +  +       LYV NLP +   +EL ++
Sbjct: 79  DEIQASVEE---EEEVEEEGDEGEEEVEEEKQTTQASGEEGRLYVGNLPYTITSSELSQI 138

Query: 137 FKPYGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSIAALDGSDVGGREMRVRFAVDM 196
           F   GTV+  ++  +  T  S+G G+VTMGSI  AK ++   + S +GGR ++V F    
Sbjct: 139 FGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGGRTVKVNFPEVP 198

Query: 197 NPKKRNLNNLHSSPKKNIIYESPYKVYIGNLAWDVKPGDLRNLFSRFGTVVSAKVLNDRR 256
              +  +             +SP+KVY GNL W++    L++ F     V+ AKV+ +R 
Sbjct: 199 RGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERN 258

Query: 257 AGKSRVYGFLSFSSAAERDAAL-SLDGTEFNNRKLVVREGMERNE 294
            G+SR +GF+SF SA    +AL +++G E   R L +    ER +
Sbjct: 259 TGRSRGFGFISFESAENVQSALATMNGVEVEGRALRLNLASEREK 300

The following BLAST results are available for this feature:

BLAST of Clc06G02480 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038906862.1	1.3e-146	92.86	28 kDa ribonucleoprotein, chloroplastic [Benincasa hispida] >XP_038906863.1 28 k...	[more]
XP_004140529.1	1.1e-142	89.46	28 kDa ribonucleoprotein, chloroplastic [Cucumis sativus] >XP_011656820.1 28 kDa...	[more]
XP_008459818.1	1.6e-141	89.12	PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Cucumis melo] >XP_008459819....	[more]
XP_022156980.1	3.4e-123	75.87	28 kDa ribonucleoprotein, chloroplastic [Momordica charantia]	[more]
XP_023513571.1	3.9e-119	74.92	28 kDa ribonucleoprotein, chloroplastic [Cucurbita pepo subsp. pepo] >XP_0235135...	[more]

BLAST of Clc06G02480 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P28644	3.1e-26	37.07	28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea OX=3562 PE=1 SV=1	[more]
Q04836	2.6e-25	36.11	31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP31A...	[more]
Q08935	1.3e-24	34.14	29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 S...	[more]
Q9FGS0	1.7e-24	32.85	RNA-binding protein CP31B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP31...	[more]
Q39061	2.2e-24	32.44	RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP33 ...	[more]

BLAST of Clc06G02480 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KAH9	5.4e-143	89.46	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G095890 PE=4 SV=1	[more]
A0A1S3CB56	7.9e-142	89.12	28 kDa ribonucleoprotein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103498833 ...	[more]
A0A5D3DM74	7.9e-142	89.12	28 kDa ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A6J1DRW5	1.6e-123	75.87	28 kDa ribonucleoprotein, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111...	[more]
A0A6J1H6A5	7.2e-119	75.24	28 kDa ribonucleoprotein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]

BLAST of Clc06G02480 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G01080.1	5.5e-71	50.68	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G01080.2	1.4e-69	50.51	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G24770.1	1.8e-26	36.11	31-kDa RNA binding protein	[more]
AT5G50250.1	1.2e-25	32.85	chloroplast RNA-binding protein 31B	[more]
AT3G52380.1	1.6e-25	32.44	chloroplast RNA-binding protein 33	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 111..184 e-value: 3.5E-19 score: 79.7 coord: 214..286 e-value: 1.1E-21 score: 88.0
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 215..283 e-value: 1.2E-16 score: 60.3 coord: 112..182 e-value: 3.6E-14 score: 52.3
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 213..290 score: 17.097071
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 110..188 score: 15.238032
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 194..294 e-value: 1.6E-22 score: 81.9
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 77..193 e-value: 1.5E-23 score: 85.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	PANTHER	PTHR48025:SF7	RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN	coord: 25..293
None	No IPR available	PANTHER	PTHR48025	OS02G0815200 PROTEIN	coord: 25..293
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 109..198
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 207..291

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc06G02480.2	Clc06G02480.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1901259	chloroplast rRNA processing
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding