Clc06G02270 (gene) Watermelon (cordophanus) v2

Overview
NameClc06G02270
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
LocationClcChr06: 2174647 .. 2175798 (-)
RNA-Seq ExpressionClc06G02270
SyntenyClc06G02270
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGTGCGAATTGCATGCACACTCGTGGGTTGAATTGGCCACCTTCCGCCTCATCTTCCAAGAGTGATTCTCATAAGATTTCAATTTGTGACTCACCTAGTCCAGGACCCAATTGAGCATTGGGCCAAGTTTATTTTAGTCTCGAGTCTTGCCTTTCGTCACCTTTAATCCTAAATAATGGAGAAATTAGCCCAAACTTTTTTGAGTTCAAATCTACCCAAAACAATTAATTGACATCTTTAATTTTTCCTATAAATACACATAAAAGATCTCATCTACTAATCTGATTATGAATATGAATGTAATTAACAAGATTTATAACTTAGTTTGTGATTAAAAGAATTTGATTTACAAAACTATTTATGGATAACAATATTTCATCTTATATCTACAAAATTAAAAGAAAAATTTAGGGATTATTTAGGCCACACCTATATTTGTGGAGTCTAAATACTTATTTAATAAAAATAATTTTTCTATTTTTTATGTGGGAAAGAAAAGTAGTTGTGCCTAATTATGGCTCAAATTAAAATGATTGAAACGATTTTGGTAGGTACTAATTGTTTAGGAATTTTTTAGTGCAACGGTGATCGAAAGAGGTATTATTGTAGTTTTAGAAATTTAATAATTCTTTTGAAAAAAAGCGGGAAAGGATTGCCTGTGAGGCACCAAGTCCTATATAAATTGCGGAGCTGATGGGTCACTTTAGCAAAACCCAACTCATCTCTTTCATTCGCTCACCGCCATCAATTTACCGGGTCGGAGCAAATGGAGAAAAACCAGAAGCGGAAAGGCTTCATGAGGCGACTATATCGAGCCGCAAGATACGCCGGCAAGGCCAAAGTGAAGCAAAGCAACCCCCCGGCGGCGTCTACATCGCTACATAGCGACGGCGGCGACGACTCTTTTGCGTTGTCGAGCGAGATGAGATCTGCAAGTAATCCGAAAAGATCCATGACGACAGTGCAGAAGCAGGCCTCATCGGTGCATGGCGGATTTCGCGACGGAATCAGTGAAATGCGGGGAGCATACGGTGGTTGTGGCGGTGGTGACGAGAATGTTGACGCAAAGGCAGCGACGTACATTTTGTTGGTAAGAGAGCGTTTGAAGATGGAGAGGTCCATGGATCGAAAAGTTGAAGCAAATTGA

mRNA sequence

ATGGGGTCGGAGCAAATGGAGAAAAACCAGAAGCGGAAAGGCTTCATGAGGCGACTATATCGAGCCGCAAGATACGCCGGCAAGGCCAAAGTGAAGCAAAGCAACCCCCCGGCGGCGTCTACATCGCTACATAGCGACGGCGGCGACGACTCTTTTGCGTTGTCGAGCGAGATGAGATCTGCAAGTAATCCGAAAAGATCCATGACGACAGTGCAGAAGCAGGCCTCATCGGTGCATGGCGGATTTCGCGACGGAATCAGTGAAATGCGGGGAGCATACGGTGGTTGTGGCGGTGGTGACGAGAATGTTGACGCAAAGGCAGCGACGTACATTTTGTTGGTAAGAGAGCGTTTGAAGATGGAGAGGTCCATGGATCGAAAAGTTGAAGCAAATTGA

Coding sequence (CDS)

ATGGGGTCGGAGCAAATGGAGAAAAACCAGAAGCGGAAAGGCTTCATGAGGCGACTATATCGAGCCGCAAGATACGCCGGCAAGGCCAAAGTGAAGCAAAGCAACCCCCCGGCGGCGTCTACATCGCTACATAGCGACGGCGGCGACGACTCTTTTGCGTTGTCGAGCGAGATGAGATCTGCAAGTAATCCGAAAAGATCCATGACGACAGTGCAGAAGCAGGCCTCATCGGTGCATGGCGGATTTCGCGACGGAATCAGTGAAATGCGGGGAGCATACGGTGGTTGTGGCGGTGGTGACGAGAATGTTGACGCAAAGGCAGCGACGTACATTTTGTTGGTAAGAGAGCGTTTGAAGATGGAGAGGTCCATGGATCGAAAAGTTGAAGCAAATTGA

Protein sequence

MGSEQMEKNQKRKGFMRRLYRAARYAGKAKVKQSNPPAASTSLHSDGGDDSFALSSEMRSASNPKRSMTTVQKQASSVHGGFRDGISEMRGAYGGCGGGDENVDAKAATYILLVRERLKMERSMDRKVEAN
Homology
BLAST of Clc06G02270 vs. NCBI nr
Match: KAA0039815.1 (hypothetical protein E6C27_scaffold122G00900 [Cucumis melo var. makuwa] >TYK24682.1 hypothetical protein E5676_scaffold266G002320 [Cucumis melo var. makuwa])

HSP 1 Score: 154.5 bits (389), Expect = 6.5e-34
Identity = 91/125 (72.80%), Postives = 97/125 (77.60%), Query Frame = 0

Query: 6   MEKNQKRKGFMRRLYRAARYAGKAKVKQSNPPAASTSLHSDGGDDSFALSSEMRSASNPK 65
           MEKNQKRKGF+RRLYRAAR AGKAKVKQ+NPP  STS +S  G DSFA SSE  SASNP 
Sbjct: 1   MEKNQKRKGFIRRLYRAARSAGKAKVKQTNPPTPSTSPNSGDGSDSFANSSETESASNPN 60

Query: 66  RSM--TTVQKQASSVHGGFRDGISEMRGAYGGCGGGDENVDAKAATYILLVRERLKMERS 125
           RS+   TVQKQASS H           GAYGG GGGDENVD KAATYILLV+ERLKMERS
Sbjct: 61  RSVAAATVQKQASSAH-----------GAYGGYGGGDENVDVKAATYILLVKERLKMERS 114

Query: 126 MDRKV 129
           MDR+V
Sbjct: 121 MDRRV 114

BLAST of Clc06G02270 vs. NCBI nr
Match: KGN46459.1 (hypothetical protein Csa_005040 [Cucumis sativus])

HSP 1 Score: 153.3 bits (386), Expect = 1.5e-33
Identity = 90/125 (72.00%), Postives = 96/125 (76.80%), Query Frame = 0

Query: 6   MEKNQKRKGFMRRLYRAARYAGKAKVKQSNPPAASTSLHSDGGDDSFALSSEMRSASNPK 65
           ME  QKRKGF+RRLYRAAR AGKAKVKQSNPP  STS +S  GDD FA SSE +SASNP 
Sbjct: 1   MENKQKRKGFIRRLYRAARSAGKAKVKQSNPPTPSTSPNSGDGDDPFANSSETKSASNPN 60

Query: 66  R--SMTTVQKQASSVHGGFRDGISEMRGAYGGCGGGDENVDAKAATYILLVRERLKMERS 125
           R  + TTVQKQASS H           GAYGG GGGDENVD KAATYILLV+ERLKMERS
Sbjct: 61  RPVAATTVQKQASSTH----------HGAYGGYGGGDENVDVKAATYILLVKERLKMERS 115

Query: 126 MDRKV 129
           MDR+V
Sbjct: 121 MDRRV 115

BLAST of Clc06G02270 vs. NCBI nr
Match: KAG6592959.1 (hypothetical protein SDJN03_12435, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 118.2 bits (295), Expect = 5.2e-23
Identity = 77/117 (65.81%), Postives = 80/117 (68.38%), Query Frame = 0

Query: 16  MRRLYRAARYAGKAKV--KQSNPPAA---STSLHSDGGDDSFALSSEMRSASNPKRSMTT 75
           MRRLYRAAR AGKAK   KQSNPPA+   +T     GG   F   SEMRS S P +S   
Sbjct: 1   MRRLYRAARSAGKAKAKGKQSNPPASMDFATETVGSGGCGRFWERSEMRSESYPNKSAAA 60

Query: 76  V---QKQASSVHGGFRDGISEMRGAYGGCGGGDENVDAKAATYILLVRERLKMERSM 125
               QKQASS HGGFRDG  EMRG YGG  GGDENVD KA TYIL VRERLKMERSM
Sbjct: 61  PRAGQKQASSAHGGFRDGNGEMRGTYGGY-GGDENVDVKATTYILWVRERLKMERSM 116

BLAST of Clc06G02270 vs. NCBI nr
Match: RWR80007.1 (hypothetical protein CKAN_00861200 [Cinnamomum micranthum f. kanehirae])

HSP 1 Score: 56.6 bits (135), Expect = 1.9e-04
Identity = 46/133 (34.59%), Postives = 68/133 (51.13%), Query Frame = 0

Query: 6   MEKNQKRKGFMR-----RLYRAARYAG----KAKVKQSNPPAASTSLHSDGGDDSFALSS 65
           ME N+KR+GFM+       YRA++        +K+KQS  PA++ S+     +  FA+S 
Sbjct: 1   MESNRKRRGFMKGKLVMSFYRASKTPSSVQFSSKIKQSQQPASTASVGFHVEEKKFAIS- 60

Query: 66  EMRSASNPKRSMTTVQKQASSVHGGFRDGISEMRGAYGGCGGGDENVDAKAATYILLVRE 125
                S+P +    V       +  F   +    GA G    GDE+VD +AATYI  V+E
Sbjct: 61  -----SSPMKQKPLVIAMDGDAYSDFVGHVEGTNGA-GASVAGDESVDLRAATYISYVQE 120

Query: 126 RLKMERSMDRKVE 130
           R ++ERS  RK +
Sbjct: 121 RFRLERSDSRKYQ 126

BLAST of Clc06G02270 vs. ExPASy TrEMBL
Match: A0A5A7TED2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G002320 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 3.2e-34
Identity = 91/125 (72.80%), Postives = 97/125 (77.60%), Query Frame = 0

Query: 6   MEKNQKRKGFMRRLYRAARYAGKAKVKQSNPPAASTSLHSDGGDDSFALSSEMRSASNPK 65
           MEKNQKRKGF+RRLYRAAR AGKAKVKQ+NPP  STS +S  G DSFA SSE  SASNP 
Sbjct: 1   MEKNQKRKGFIRRLYRAARSAGKAKVKQTNPPTPSTSPNSGDGSDSFANSSETESASNPN 60

Query: 66  RSM--TTVQKQASSVHGGFRDGISEMRGAYGGCGGGDENVDAKAATYILLVRERLKMERS 125
           RS+   TVQKQASS H           GAYGG GGGDENVD KAATYILLV+ERLKMERS
Sbjct: 61  RSVAAATVQKQASSAH-----------GAYGGYGGGDENVDVKAATYILLVKERLKMERS 114

Query: 126 MDRKV 129
           MDR+V
Sbjct: 121 MDRRV 114

BLAST of Clc06G02270 vs. ExPASy TrEMBL
Match: A0A0A0KCA4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G094770 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 7.0e-34
Identity = 90/125 (72.00%), Postives = 96/125 (76.80%), Query Frame = 0

Query: 6   MEKNQKRKGFMRRLYRAARYAGKAKVKQSNPPAASTSLHSDGGDDSFALSSEMRSASNPK 65
           ME  QKRKGF+RRLYRAAR AGKAKVKQSNPP  STS +S  GDD FA SSE +SASNP 
Sbjct: 1   MENKQKRKGFIRRLYRAARSAGKAKVKQSNPPTPSTSPNSGDGDDPFANSSETKSASNPN 60

Query: 66  R--SMTTVQKQASSVHGGFRDGISEMRGAYGGCGGGDENVDAKAATYILLVRERLKMERS 125
           R  + TTVQKQASS H           GAYGG GGGDENVD KAATYILLV+ERLKMERS
Sbjct: 61  RPVAATTVQKQASSTH----------HGAYGGYGGGDENVDVKAATYILLVKERLKMERS 115

Query: 126 MDRKV 129
           MDR+V
Sbjct: 121 MDRRV 115

BLAST of Clc06G02270 vs. ExPASy TrEMBL
Match: A0A443NNB4 (Uncharacterized protein OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_00861200 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 9.0e-05
Identity = 46/133 (34.59%), Postives = 68/133 (51.13%), Query Frame = 0

Query: 6   MEKNQKRKGFMR-----RLYRAARYAG----KAKVKQSNPPAASTSLHSDGGDDSFALSS 65
           ME N+KR+GFM+       YRA++        +K+KQS  PA++ S+     +  FA+S 
Sbjct: 1   MESNRKRRGFMKGKLVMSFYRASKTPSSVQFSSKIKQSQQPASTASVGFHVEEKKFAIS- 60

Query: 66  EMRSASNPKRSMTTVQKQASSVHGGFRDGISEMRGAYGGCGGGDENVDAKAATYILLVRE 125
                S+P +    V       +  F   +    GA G    GDE+VD +AATYI  V+E
Sbjct: 61  -----SSPMKQKPLVIAMDGDAYSDFVGHVEGTNGA-GASVAGDESVDLRAATYISYVQE 120

Query: 126 RLKMERSMDRKVE 130
           R ++ERS  RK +
Sbjct: 121 RFRLERSDSRKYQ 126

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0039815.16.5e-3472.80hypothetical protein E6C27_scaffold122G00900 [Cucumis melo var. makuwa] >TYK2468... [more]
KGN46459.11.5e-3372.00hypothetical protein Csa_005040 [Cucumis sativus][more]
KAG6592959.15.2e-2365.81hypothetical protein SDJN03_12435, partial [Cucurbita argyrosperma subsp. sorori... [more]
RWR80007.11.9e-0434.59hypothetical protein CKAN_00861200 [Cinnamomum micranthum f. kanehirae][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TED23.2e-3472.80Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KCA47.0e-3472.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G094770 PE=4 SV=1[more]
A0A443NNB49.0e-0534.59Uncharacterized protein OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 26..83
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 34..77
NoneNo IPR availablePANTHERPTHR36030FAMILY NOT NAMEDcoord: 6..125

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc06G02270.2Clc06G02270.2mRNA