Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGAAACAATAGGGGGTTTCAAGTTTTTCTTAAAAAATTTCCCTCCAAAACTTCCCAAAGTTAAAAGTGTCAAAATCTGAAACCAACAACAAAAGAAAACCCTAAAAAAAATGGATGTCATCAATGCAGAGAAGCTTTTTGCCATAAAATATTGTTACAAGAAAAGCCAACTCTTCTTCTACAATCTCACTCTTTTTCACTCTCTCATCATCTTCTTCTTTACCTTTTGCCTTTCTTCCCAATCTCATTGCTTTCCTCCCCACGCGCTTTCTTCGACGATCAAAATGGTCATTACGCCGCCCTCGTTCTTCAGCCCGAATTGCTTGTTTGTTGTCGTTAATTTCATCGTCGTCTACATCGTTGGGGAACAAAAGCTCGCTTGGATGAACAAAATGTATGACGAATACTACATTGAGAGGACCATGGAGATGAACATGAATCCTTGTGATAATATGAAACAATTGGTTCAGAAAGTGGTGGAAGAAAAAGAAGCGGAAGAGATCGCCGTCGCCGACCGACGAAGCCACGGTGTCAATGGGAGTAAAAAAGAGAGTGAAGGCAATTGCGAGTTGGCCAATGAAGAGTTGAACAAAAGAGCAGAAGCCTTCATTGCAAGAGTTAACAAGCAAAGGAAGCTTGAAGCTGTGGATTGTTACTAAGCCAAGTTTTTATCTTTCGTCCTTTTTTTTTTTT
mRNA sequence
TGAAACAATAGGGGGTTTCAAGTTTTTCTTAAAAAATTTCCCTCCAAAACTTCCCAAAGTTAAAAGTGTCAAAATCTGAAACCAACAACAAAAGAAAACCCTAAAAAAAATGGATGTCATCAATGCAGAGAAGCTTTTTGCCATAAAATATTGTTACAAGAAAAGCCAACTCTTCTTCTACAATCTCACTCTTTTTCACTCTCTCATCATCTTCTTCTTTACCTTTTGCCTTTCTTCCCAATCTCATTGCTTTCCTCCCCACGCGCTTTCTTCGACGATCAAAATGGTCATTACGCCGCCCTCGTTCTTCAGCCCGAATTGCTTGTTTGTTGTCGTTAATTTCATCGTCGTCTACATCGTTGGGGAACAAAAGCTCGCTTGGATGAACAAAATGTATGACGAATACTACATTGAGAGGACCATGGAGATGAACATGAATCCTTGTGATAATATGAAACAATTGGTTCAGAAAGTGGTGGAAGAAAAAGAAGCGGAAGAGATCGCCGTCGCCGACCGACGAAGCCACGGTGTCAATGGGAGTAAAAAAGAGAGTGAAGGCAATTGCGAGTTGGCCAATGAAGAGTTGAACAAAAGAGCAGAAGCCTTCATTGCAAGAGTTAACAAGCAAAGGAAGCTTGAAGCTGTGGATTGTTACTAAGCCAAGTTTTTATCTTTCGTCCTTTTTTTTTTTT
Coding sequence (CDS)
ATGGATGTCATCAATGCAGAGAAGCTTTTTGCCATAAAATATTGTTACAAGAAAAGCCAACTCTTCTTCTACAATCTCACTCTTTTTCACTCTCTCATCATCTTCTTCTTTACCTTTTGCCTTTCTTCCCAATCTCATTGCTTTCCTCCCCACGCGCTTTCTTCGACGATCAAAATGGTCATTACGCCGCCCTCGTTCTTCAGCCCGAATTGCTTGTTTGTTGTCGTTAATTTCATCGTCGTCTACATCGTTGGGGAACAAAAGCTCGCTTGGATGAACAAAATGTATGACGAATACTACATTGAGAGGACCATGGAGATGAACATGAATCCTTGTGATAATATGAAACAATTGGTTCAGAAAGTGGTGGAAGAAAAAGAAGCGGAAGAGATCGCCGTCGCCGACCGACGAAGCCACGGTGTCAATGGGAGTAAAAAAGAGAGTGAAGGCAATTGCGAGTTGGCCAATGAAGAGTTGAACAAAAGAGCAGAAGCCTTCATTGCAAGAGTTAACAAGCAAAGGAAGCTTGAAGCTGTGGATTGTTACTAA
Protein sequence
MDVINAEKLFAIKYCYKKSQLFFYNLTLFHSLIIFFFTFCLSSQSHCFPPHALSSTIKMVITPPSFFSPNCLFVVVNFIVVYIVGEQKLAWMNKMYDEYYIERTMEMNMNPCDNMKQLVQKVVEEKEAEEIAVADRRSHGVNGSKKESEGNCELANEELNKRAEAFIARVNKQRKLEAVDCY
Homology
BLAST of Clc06G02150 vs. NCBI nr
Match:
XP_038875115.1 (uncharacterized protein LOC120067646 [Benincasa hispida])
HSP 1 Score: 269.6 bits (688), Expect = 1.9e-68
Identity = 145/188 (77.13%), Postives = 160/188 (85.11%), Query Frame = 0
Query: 1 MDVINAEKLFAIKYCYKKSQLFFYNLTLFHSLIIFFFTFCLSSQSHCFPPHALSSTIKMV 60
MDVI+AEKLFAIKYCYKKSQLF YNL LFHSLIIFFFTF LSSQ CFPP ALSS I MV
Sbjct: 1 MDVISAEKLFAIKYCYKKSQLFLYNLNLFHSLIIFFFTFWLSSQFDCFPPDALSSMINMV 60
Query: 61 ITPPSFFSPNCLFVVVNFIVVYIVGEQKLAW------MNKMYDEYYIERTMEMNMNPCDN 120
+ PPSFFSP+C FV+VNFIV+YIVGEQKLA MNKMYDEYYI +TMEMNMN C+N
Sbjct: 61 VMPPSFFSPSCFFVIVNFIVIYIVGEQKLAGAESSSIMNKMYDEYYIGKTMEMNMNSCEN 120
Query: 121 MKQLVQKVVEEKEAEEIAVADRRSHGVNGSKK-ESEGNCELANEELNKRAEAFIARVNKQ 180
MKQLV+KVVEEKE EE+ + + GV+ S+K E+EG+CELANEELNKRAEAFIARVNKQ
Sbjct: 121 MKQLVEKVVEEKEEEEMGFVEGDNDGVDVSEKLETEGDCELANEELNKRAEAFIARVNKQ 180
Query: 181 RKLEAVDC 182
RKLEAVDC
Sbjct: 181 RKLEAVDC 188
BLAST of Clc06G02150 vs. NCBI nr
Match:
KAE8646757.1 (hypothetical protein Csa_004884 [Cucumis sativus])
HSP 1 Score: 252.3 bits (643), Expect = 3.2e-63
Identity = 139/187 (74.33%), Postives = 158/187 (84.49%), Query Frame = 0
Query: 1 MDVINAEKLFAIKYCYKKSQLFFYNLTLFHSLIIFFFTFCLSSQSHCFPPHALSSTIKMV 60
MDVINAEKLFAIKYCYKKSQLF YNL +FHSLI FFT+ LSSQSH FPP +SS IKMV
Sbjct: 1 MDVINAEKLFAIKYCYKKSQLFLYNLNIFHSLIFLFFTYWLSSQSHYFPPDTISSIIKMV 60
Query: 61 ITPPSFFSPNCLFVVVNFIVVYIVGEQKL-----AWMNKMYDEYYIERTMEMN-MNPCDN 120
TPPSFFSP+CLFV+VNFIVVYIVGEQKL A+MN MYDEYYIERT+EM +NPC+N
Sbjct: 61 ATPPSFFSPSCLFVIVNFIVVYIVGEQKLTGAKSAFMNTMYDEYYIERTLEMKYLNPCEN 120
Query: 121 MKQL-VQKVVEEKEAEEIAVADRRSHGVNGSKKESEGNCELANEELNKRAEAFIARVNKQ 180
MK+L V+K VEEKE E I+ + +G+ S+KE+EG+C+LANEELNKRAEAFIARVNKQ
Sbjct: 121 MKELVVEKFVEEKEEEGISPIE-DDNGIGFSEKENEGDCKLANEELNKRAEAFIARVNKQ 180
BLAST of Clc06G02150 vs. NCBI nr
Match:
KAA0039829.1 (DUF4408 domain-containing protein [Cucumis melo var. makuwa] >TYK24670.1 DUF4408 domain-containing protein [Cucumis melo var. makuwa])
HSP 1 Score: 251.5 bits (641), Expect = 5.4e-63
Identity = 144/191 (75.39%), Postives = 158/191 (82.72%), Query Frame = 0
Query: 1 MDVINAEKLFAIKYCYKKSQLFFYNLTLFHSL-IIFFFTFCL-SSQSHCFPPHALSSTIK 60
MDVINAEKLFAIKYCYKKSQLF YNL LF SL IIFFFT+ L SSQSH FPP +SS IK
Sbjct: 1 MDVINAEKLFAIKYCYKKSQLFLYNLNLFRSLIIIFFFTYWLISSQSHYFPPDTISSIIK 60
Query: 61 MVITPPSFFSPNCLFVVVNFIVVYIVGEQKL-----AWMNKMYDEYYIERTMEMN--MNP 120
+VITPPSFFSP+CLFV+VNFIVVYIVGEQKL A MN MYDEYYIERTMEM +NP
Sbjct: 61 IVITPPSFFSPSCLFVIVNFIVVYIVGEQKLTSAKSASMNIMYDEYYIERTMEMKHYLNP 120
Query: 121 CDNMKQLVQKVVEEKEAEEIAVADRRSHGVNGSKKESEGNCELANEELNKRAEAFIARVN 180
C+NMKQLV+K VEEKE E I D +GV+ KE+EG+C+ ANEELNKRAEAFIARVN
Sbjct: 121 CENMKQLVEKTVEEKEEEGIGSID-DDNGVDFIDKENEGDCKFANEELNKRAEAFIARVN 180
Query: 181 KQRKLEAVDCY 183
KQRKLEAVDC+
Sbjct: 181 KQRKLEAVDCF 190
BLAST of Clc06G02150 vs. NCBI nr
Match:
XP_007221609.1 (zinc finger E-box-binding homeobox 1 [Prunus persica] >ONI29918.1 hypothetical protein PRUPE_1G222200 [Prunus persica])
HSP 1 Score: 85.5 bits (210), Expect = 5.2e-13
Identity = 80/227 (35.24%), Postives = 109/227 (48.02%), Query Frame = 0
Query: 1 MDVINAEKLFAIKYCYKK---SQLFFYNLTLFHSLIIFFFTFCLSSQSHCFPPHALSSTI 60
MD I EKL A+K YKK SQ+F+ +L L+I L S SH FP + +
Sbjct: 1 MDPIKGEKLRAMK-SYKKQNNSQIFY---SLIVHLLIAIACCLLCSYSHWFPFLYTAKHL 60
Query: 61 KMVITPPS---FFSPNCLFVVVNFIVVYIVGEQKLAW-----MNKMYDEY---------- 120
+ P S FF+P CLF+VVNFIVV+++GE +L+ N+MY+EY
Sbjct: 61 LFMSLPNSWSGFFNPRCLFIVVNFIVVFLIGESRLSGRQSSPANEMYNEYVERTRSLRAP 120
Query: 121 ---YIERTMEMNMNPCDNMKQLVQKVVEEKEAEEI------------------------- 179
+ E+ E P + K+ K++EEKE +E
Sbjct: 121 TSMFQEKKEERTELPILSQKEDNAKILEEKEVDETKEDKHEVDQDEDFKECEGTDEEEKE 180
BLAST of Clc06G02150 vs. NCBI nr
Match:
PQQ10153.1 (zinc finger E-box-binding homeobox 1 [Prunus yedoensis var. nudiflora])
HSP 1 Score: 83.6 bits (205), Expect = 2.0e-12
Identity = 78/236 (33.05%), Postives = 111/236 (47.03%), Query Frame = 0
Query: 1 MDVINAEKLFAIKYCYKK---SQLFFYNLTLFHSLIIFFFTFCLSSQSHCFPPHALSSTI 60
MD IN +KL A+K YKK SQ+F+ +L L+I L S SH FP + +
Sbjct: 1 MDPINGQKLRAMK-SYKKQNNSQIFY---SLIVHLLIAIACCLLCSYSHWFPSLYTAKHL 60
Query: 61 KMVITPPS---FFSPNCLFVVVNFIVVYIVGEQKLAW-----MNKMYDEY---------- 120
+ P S FF+P CLF+VVNFIVV+++GE +L+ N+MY+EY
Sbjct: 61 LFMSLPNSWSGFFNPRCLFIVVNFIVVFLIGESRLSGRQSSPANEMYNEYVERTRSLRAP 120
Query: 121 ---YIERTMEMNMNPCDNMKQLVQKVVEEKEAEEI------------------------- 179
++E+ E + + K+ K++EEKE +E
Sbjct: 121 TSTFLEKKEERTVPAILSQKEDNAKILEEKEVDETKEDKHEDDQDEDFKECEGTDEEEKE 180
BLAST of Clc06G02150 vs. ExPASy TrEMBL
Match:
A0A0A0K9L0 (DUF4408 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G094140 PE=4 SV=1)
HSP 1 Score: 256.9 bits (655), Expect = 6.3e-65
Identity = 140/189 (74.07%), Postives = 160/189 (84.66%), Query Frame = 0
Query: 1 MDVINAEKLFAIKYCYKKSQLFFYNLTLFHSLIIFFFTFCLSSQSHCFPPHALSSTIKMV 60
MDVINAEKLFAIKYCYKKSQLF YNL +FHSLI FFT+ LSSQSH FPP +SS IKMV
Sbjct: 1 MDVINAEKLFAIKYCYKKSQLFLYNLNIFHSLIFLFFTYWLSSQSHYFPPDTISSIIKMV 60
Query: 61 ITPPSFFSPNCLFVVVNFIVVYIVGEQKL-----AWMNKMYDEYYIERTMEMN-MNPCDN 120
TPPSFFSP+CLFV+VNFIVVYIVGEQKL A+MN MYDEYYIERT+EM +NPC+N
Sbjct: 61 ATPPSFFSPSCLFVIVNFIVVYIVGEQKLTGAKSAFMNTMYDEYYIERTLEMKYLNPCEN 120
Query: 121 MKQL-VQKVVEEKEAEEIAVADRRSHGVNGSKKESEGNCELANEELNKRAEAFIARVNKQ 180
MK+L V+K VEEKE E I+ + +G+ S+KE+EG+C+LANEELNKRAEAFIARVNKQ
Sbjct: 121 MKELVVEKFVEEKEEEGISPIE-DDNGIGFSEKENEGDCKLANEELNKRAEAFIARVNKQ 180
Query: 181 RKLEAVDCY 183
RKLEAVDC+
Sbjct: 181 RKLEAVDCF 188
BLAST of Clc06G02150 vs. ExPASy TrEMBL
Match:
A0A5D3DN17 (DUF4408 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G002200 PE=4 SV=1)
HSP 1 Score: 251.5 bits (641), Expect = 2.6e-63
Identity = 144/191 (75.39%), Postives = 158/191 (82.72%), Query Frame = 0
Query: 1 MDVINAEKLFAIKYCYKKSQLFFYNLTLFHSL-IIFFFTFCL-SSQSHCFPPHALSSTIK 60
MDVINAEKLFAIKYCYKKSQLF YNL LF SL IIFFFT+ L SSQSH FPP +SS IK
Sbjct: 1 MDVINAEKLFAIKYCYKKSQLFLYNLNLFRSLIIIFFFTYWLISSQSHYFPPDTISSIIK 60
Query: 61 MVITPPSFFSPNCLFVVVNFIVVYIVGEQKL-----AWMNKMYDEYYIERTMEMN--MNP 120
+VITPPSFFSP+CLFV+VNFIVVYIVGEQKL A MN MYDEYYIERTMEM +NP
Sbjct: 61 IVITPPSFFSPSCLFVIVNFIVVYIVGEQKLTSAKSASMNIMYDEYYIERTMEMKHYLNP 120
Query: 121 CDNMKQLVQKVVEEKEAEEIAVADRRSHGVNGSKKESEGNCELANEELNKRAEAFIARVN 180
C+NMKQLV+K VEEKE E I D +GV+ KE+EG+C+ ANEELNKRAEAFIARVN
Sbjct: 121 CENMKQLVEKTVEEKEEEGIGSID-DDNGVDFIDKENEGDCKFANEELNKRAEAFIARVN 180
Query: 181 KQRKLEAVDCY 183
KQRKLEAVDC+
Sbjct: 181 KQRKLEAVDCF 190
BLAST of Clc06G02150 vs. ExPASy TrEMBL
Match:
M5XMS0 (DUF4408 domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_1G222200 PE=4 SV=1)
HSP 1 Score: 85.5 bits (210), Expect = 2.5e-13
Identity = 80/227 (35.24%), Postives = 109/227 (48.02%), Query Frame = 0
Query: 1 MDVINAEKLFAIKYCYKK---SQLFFYNLTLFHSLIIFFFTFCLSSQSHCFPPHALSSTI 60
MD I EKL A+K YKK SQ+F+ +L L+I L S SH FP + +
Sbjct: 1 MDPIKGEKLRAMK-SYKKQNNSQIFY---SLIVHLLIAIACCLLCSYSHWFPFLYTAKHL 60
Query: 61 KMVITPPS---FFSPNCLFVVVNFIVVYIVGEQKLAW-----MNKMYDEY---------- 120
+ P S FF+P CLF+VVNFIVV+++GE +L+ N+MY+EY
Sbjct: 61 LFMSLPNSWSGFFNPRCLFIVVNFIVVFLIGESRLSGRQSSPANEMYNEYVERTRSLRAP 120
Query: 121 ---YIERTMEMNMNPCDNMKQLVQKVVEEKEAEEI------------------------- 179
+ E+ E P + K+ K++EEKE +E
Sbjct: 121 TSMFQEKKEERTELPILSQKEDNAKILEEKEVDETKEDKHEVDQDEDFKECEGTDEEEKE 180
BLAST of Clc06G02150 vs. ExPASy TrEMBL
Match:
A0A314YTX2 (Zinc finger E-box-binding homeobox 1 OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_32330 PE=4 SV=1)
HSP 1 Score: 83.6 bits (205), Expect = 9.5e-13
Identity = 78/236 (33.05%), Postives = 111/236 (47.03%), Query Frame = 0
Query: 1 MDVINAEKLFAIKYCYKK---SQLFFYNLTLFHSLIIFFFTFCLSSQSHCFPPHALSSTI 60
MD IN +KL A+K YKK SQ+F+ +L L+I L S SH FP + +
Sbjct: 1 MDPINGQKLRAMK-SYKKQNNSQIFY---SLIVHLLIAIACCLLCSYSHWFPSLYTAKHL 60
Query: 61 KMVITPPS---FFSPNCLFVVVNFIVVYIVGEQKLAW-----MNKMYDEY---------- 120
+ P S FF+P CLF+VVNFIVV+++GE +L+ N+MY+EY
Sbjct: 61 LFMSLPNSWSGFFNPRCLFIVVNFIVVFLIGESRLSGRQSSPANEMYNEYVERTRSLRAP 120
Query: 121 ---YIERTMEMNMNPCDNMKQLVQKVVEEKEAEEI------------------------- 179
++E+ E + + K+ K++EEKE +E
Sbjct: 121 TSTFLEKKEERTVPAILSQKEDNAKILEEKEVDETKEDKHEDDQDEDFKECEGTDEEEKE 180
BLAST of Clc06G02150 vs. ExPASy TrEMBL
Match:
A0A5E4EWE0 (PREDICTED: L484_010133 OS=Prunus dulcis OX=3755 GN=ALMOND_2B009142 PE=4 SV=1)
HSP 1 Score: 82.0 bits (201), Expect = 2.8e-12
Identity = 81/233 (34.76%), Postives = 110/233 (47.21%), Query Frame = 0
Query: 1 MDVINAEKLFAIKYCYKK---SQLFFYNLTLFHSLIIFFFTFCLSSQSHCFPPHALSSTI 60
MD I EKL A+K YKK SQ+F+ +L L+I L S SH FP + +
Sbjct: 1 MDPIKGEKLRAMK-SYKKQNNSQIFY---SLIVHLLIAIACCLLCSYSHWFPSLYTAKHL 60
Query: 61 KMVITPPS---FFSPNCLFVVVNFIVVYIVGEQKLAW-----MNKMYDEY---------- 120
+ P S FF+P CLF+VVNFIVV+++GE +L+ N+MY+EY
Sbjct: 61 LFMSLPNSWSGFFNPRCLFIVVNFIVVFLIGESRLSGRQSSPANEMYNEYVERTRSLRAP 120
Query: 121 ---YIERTMEMNMNPCDNMKQLVQKVVEEKEAEEI------------------------- 179
+ E+ E P + K+ K++EEKE +E
Sbjct: 121 TSMFQEKKEERTELPILSQKEDNAKILEEKEVDETKEDKHEVDQDEDFKECEGTDEEEKE 180
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_038875115.1 | 1.9e-68 | 77.13 | uncharacterized protein LOC120067646 [Benincasa hispida] | [more] |
KAE8646757.1 | 3.2e-63 | 74.33 | hypothetical protein Csa_004884 [Cucumis sativus] | [more] |
KAA0039829.1 | 5.4e-63 | 75.39 | DUF4408 domain-containing protein [Cucumis melo var. makuwa] >TYK24670.1 DUF4408... | [more] |
XP_007221609.1 | 5.2e-13 | 35.24 | zinc finger E-box-binding homeobox 1 [Prunus persica] >ONI29918.1 hypothetical p... | [more] |
PQQ10153.1 | 2.0e-12 | 33.05 | zinc finger E-box-binding homeobox 1 [Prunus yedoensis var. nudiflora] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0K9L0 | 6.3e-65 | 74.07 | DUF4408 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G094140 PE=... | [more] |
A0A5D3DN17 | 2.6e-63 | 75.39 | DUF4408 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
M5XMS0 | 2.5e-13 | 35.24 | DUF4408 domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_1G222200 PE... | [more] |
A0A314YTX2 | 9.5e-13 | 33.05 | Zinc finger E-box-binding homeobox 1 OS=Prunus yedoensis var. nudiflora OX=20945... | [more] |
A0A5E4EWE0 | 2.8e-12 | 34.76 | PREDICTED: L484_010133 OS=Prunus dulcis OX=3755 GN=ALMOND_2B009142 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |