Clc06G02070 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc06G02070
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Auxin-responsive protein SAUR36
Location	ClcChr06: 1969784 .. 1971057 (+)
RNA-Seq Expression	Clc06G02070
Synteny	Clc06G02070

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTATATATAAAACCTCTTCTTCCTCCCTCCAATTTCATACAGACGCCATTTTCAATCAATCCAAGACGAAGAACAGAGAAATTCCTTTTTTTTTTTTAAATTCTTTTTCATTTTTCTTCAGAATCTTCAAGAAATTTTCACAATCAACTTTCTTCGTTGTTTCTTTTTCTTTTTCATAAACATCTTCAATTAATTTCCTCCCCCAAATTCATCGAATTGATTCTTCGTTAATCACGATGAGTAACACAATGAGGCCAAGGGTTAAGATCTTGTTCTATTTGGTCTACGATCGAGGTTAATTTCCATCAAATTCGACAAAATCAAATCCAGTTTCCGTTCCATTCATCTCGCTAGGTTACGATTCGGAGGATTTTCATTTCTAAAATTCGCTAAGTTCGTTTACGTTTGATCCATGGATTTGAATAGAGAGAAAGTGAAGAACAAGGGATTGATCTTGAAAACCTGGGAGCGGTGCAAGTCGATGGGCCGAGGGCGAAGAAATCCACCGTCCTCCGCCGGAATAAAACGATTCTTAACGAGGAAGACAAAATCCTTGCCTCGCCTGGAGGTCTTCTCCGGCGGAGAAGACGAGGACGAGAAGGAACGACGGCGGACCTTTGGCCAAAAGCGGAGAGTGGCGCCGGAAGGATGTTTCACGGTGTACGTCGGAGCGGAGAGGCAGAGATTTGTGATCAGAACAGAGTGTGCGAATCATCCTCTGTTCCGATCGCTTTTGGAGGAGGCAGAGGCGGAGTACGGATACAACTGCCAAGCGCCGCTATCGCTACCGTGCGATGTAGAGAGTTTTTACAGCGTGCTGATGGAGATGGACTACGACGGCGCCGCTGATCTCCGCCGTGGATGTGGATATCCTACTCCGAAGAGATTTGGATCTTATCATCTTCTCAGTCCCCGTTCTTCATCTCTCGTTGTAAATTAAATCGGTTCCACTTCTGATTCTCTATTTCTCTCTCCTTTTGGAATTTAAAAGTGAATTTTATGTGTATTTGGTGCGTTTAGATTTAGATTTTAGGATATGTTTGTTGTTCCAAAAGGAGGCGGTTATAAGTGTGTTTTGTTATAAGGGTTTGTCTTTCAAAATTCGAACGGTACCAAATCAAACCGAATCAATTTGGTTTTAATAGATCGGTTTGTTCTTTAGCAAAATGGTATGCATGTAGTATATGGTGGTTGAAACTTGTCTAAACTTGATTTAAAGATAGTAAGATTGAACATAATTCAATGGTAATTGGCATAGTTTTTTTCTTTAGAA

mRNA sequence

TTTATATATAAAACCTCTTCTTCCTCCCTCCAATTTCATACAGACGCCATTTTCAATCAATCCAAGACGAAGAACAGAGAAATTCCTTTTTTTTTTTTAAATTCTTTTTCATTTTTCTTCAGAATCTTCAAGAAATTTTCACAATCAACTTTCTTCGTTGTTTCTTTTTCTTTTTCATAAACATCTTCAATTAATTTCCTCCCCCAAATTCATCGAATTGATTCTTCGTTAATCACGATGAGTAACACAATGAGGCCAAGGGTTAAGATCTTGTTCTATTTGGTCTACGATCGAGGTTAATTTCCATCAAATTCGACAAAATCAAATCCAGTTTCCGTTCCATTCATCTCGCTAGGTTACGATTCGGAGGATTTTCATTTCTAAAATTCGCTAAGTTCGTTTACGTTTGATCCATGGATTTGAATAGAGAGAAAGTGAAGAACAAGGGATTGATCTTGAAAACCTGGGAGCGGTGCAAGTCGATGGGCCGAGGGCGAAGAAATCCACCGTCCTCCGCCGGAATAAAACGATTCTTAACGAGGAAGACAAAATCCTTGCCTCGCCTGGAGGTCTTCTCCGGCGGAGAAGACGAGGACGAGAAGGAACGACGGCGGACCTTTGGCCAAAAGCGGAGAGTGGCGCCGGAAGGATGTTTCACGGTGTACGTCGGAGCGGAGAGGCAGAGATTTGTGATCAGAACAGAGTGTGCGAATCATCCTCTGTTCCGATCGCTTTTGGAGGAGGCAGAGGCGGAGTACGGATACAACTGCCAAGCGCCGCTATCGCTACCGTGCGATGTAGAGAGTTTTTACAGCGTGCTGATGGAGATGGACTACGACGGCGCCGCTGATCTCCGCCGTGGATGTGGATATCCTACTCCGAAGAGATTTGGATCTTATCATCTTCTCAGTCCCCGTTCTTCATCTCTCGTTGTAAATTAAATCGGTTCCACTTCTGATTCTCTATTTCTCTCTCCTTTTGGAATTTAAAAGTGAATTTTATGTGTATTTGGTGCGTTTAGATTTAGATTTTAGGATATGTTTGTTGTTCCAAAAGGAGGCGGTTATAAGTGTGTTTTGTTATAAGGGTTTGTCTTTCAAAATTCGAACGGTACCAAATCAAACCGAATCAATTTGGTTTTAATAGATCGGTTTGTTCTTTAGCAAAATGGTATGCATGTAGTATATGGTGGTTGAAACTTGTCTAAACTTGATTTAAAGATAGTAAGATTGAACATAATTCAATGGTAATTGGCATAGTTTTTTTCTTTAGAA

Coding sequence (CDS)

ATGGATTTGAATAGAGAGAAAGTGAAGAACAAGGGATTGATCTTGAAAACCTGGGAGCGGTGCAAGTCGATGGGCCGAGGGCGAAGAAATCCACCGTCCTCCGCCGGAATAAAACGATTCTTAACGAGGAAGACAAAATCCTTGCCTCGCCTGGAGGTCTTCTCCGGCGGAGAAGACGAGGACGAGAAGGAACGACGGCGGACCTTTGGCCAAAAGCGGAGAGTGGCGCCGGAAGGATGTTTCACGGTGTACGTCGGAGCGGAGAGGCAGAGATTTGTGATCAGAACAGAGTGTGCGAATCATCCTCTGTTCCGATCGCTTTTGGAGGAGGCAGAGGCGGAGTACGGATACAACTGCCAAGCGCCGCTATCGCTACCGTGCGATGTAGAGAGTTTTTACAGCGTGCTGATGGAGATGGACTACGACGGCGCCGCTGATCTCCGCCGTGGATGTGGATATCCTACTCCGAAGAGATTTGGATCTTATCATCTTCTCAGTCCCCGTTCTTCATCTCTCGTTGTAAATTAA

Protein sequence

MDLNREKVKNKGLILKTWERCKSMGRGRRNPPSSAGIKRFLTRKTKSLPRLEVFSGGEDEDEKERRRTFGQKRRVAPEGCFTVYVGAERQRFVIRTECANHPLFRSLLEEAEAEYGYNCQAPLSLPCDVESFYSVLMEMDYDGAADLRRGCGYPTPKRFGSYHLLSPRSSSLVVN

Homology

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BLAST of Clc06G02070 vs. NCBI nr
Match: XP_004140543.1 (protein SMALL AUXIN UP-REGULATED RNA 10 [Cucumis sativus])

HSP 1 Score: 325.1 bits (832), Expect = 3.7e-85
Identity = 161/175 (92.00%), Postives = 167/175 (95.43%), Query Frame = 0


Query: 1   MDLNREKVKNKGLILKTWERCKSMGRGRRNPPSSAGIKRFLTRKTKSLPRLEVFSGGEDE 60
           MDL+REKVKNKGLILKTWERCKSMGRG+RN PSS GIKRFLTRKTKSLPRLEVFSGGEDE
Sbjct: 1   MDLSREKVKNKGLILKTWERCKSMGRGQRNSPSSTGIKRFLTRKTKSLPRLEVFSGGEDE 60

Query: 61  DEKERRRTFGQKRRVAPEGCFTVYVGAERQRFVIRTECANHPLFRSLLEEAEAEYGYNCQ 120
           DEKERRR+  +KRRVAPEGCFTVYVGAERQRFVI+TECANHPLFRSLLEEAEAEYGYNCQ
Sbjct: 61  DEKERRRS--RKRRVAPEGCFTVYVGAERQRFVIKTECANHPLFRSLLEEAEAEYGYNCQ 120

Query: 121 APLSLPCDVESFYSVLMEMDYDGAADLRRGCGYPTPKRFGSYHLLSPRSSSLVVN 176
           APLSLPCDVESFYSVLMEMD D A DLRRGCGYPTPKRFG Y+LLSPRSSSLVVN
Sbjct: 121 APLSLPCDVESFYSVLMEMDDDSAGDLRRGCGYPTPKRFG-YNLLSPRSSSLVVN 172

[Close]

BLAST of Clc06G02070 vs. NCBI nr
Match: XP_038874823.1 (auxin-responsive protein SAUR50 [Benincasa hispida])

HSP 1 Score: 324.3 bits (830), Expect = 6.4e-85
Identity = 157/174 (90.23%), Postives = 162/174 (93.10%), Query Frame = 0


Query: 1   MDLNREKVKNKGLILKTWERCKSMGRGRRNPPSSAGIKRFLTRKTKSLPRLEVFSGGEDE 60
           MD + EKVKNKGLILKTWERCKSMGR  RN PSSAGIKR LTRKTKSLP L+VFSGGED+
Sbjct: 1   MDFSTEKVKNKGLILKTWERCKSMGRRGRNSPSSAGIKRLLTRKTKSLPHLKVFSGGEDD 60

Query: 61  DEKERRRTFGQKRRVAPEGCFTVYVGAERQRFVIRTECANHPLFRSLLEEAEAEYGYNCQ 120
           DEKERRR+FG K RVAPEGCFTVYVGAERQRFVIRTECANHPLFRSLLEEAE EYGYNCQ
Sbjct: 61  DEKERRRSFGGKGRVAPEGCFTVYVGAERQRFVIRTECANHPLFRSLLEEAEEEYGYNCQ 120

Query: 121 APLSLPCDVESFYSVLMEMDYDGAADLRRGCGYPTPKRFGSYHLLSPRSSSLVV 175
           APLSLPCDVESFY+VLMEMD DG ADLRRGCGYPTPKRFGSYHLLSPRSSSLVV
Sbjct: 121 APLSLPCDVESFYNVLMEMDDDGGADLRRGCGYPTPKRFGSYHLLSPRSSSLVV 174

[Close]

BLAST of Clc06G02070 vs. NCBI nr
Match: KGN46442.2 (hypothetical protein Csa_005435 [Cucumis sativus])

HSP 1 Score: 321.2 bits (822), Expect = 5.4e-84
Identity = 159/173 (91.91%), Postives = 165/173 (95.38%), Query Frame = 0


Query: 1   MDLNREKVKNKGLILKTWERCKSMGRGRRNPPSSAGIKRFLTRKTKSLPRLEVFSGGEDE 60
           MDL+REKVKNKGLILKTWERCKSMGRG+RN PSS GIKRFLTRKTKSLPRLEVFSGGEDE
Sbjct: 1   MDLSREKVKNKGLILKTWERCKSMGRGQRNSPSSTGIKRFLTRKTKSLPRLEVFSGGEDE 60

Query: 61  DEKERRRTFGQKRRVAPEGCFTVYVGAERQRFVIRTECANHPLFRSLLEEAEAEYGYNCQ 120
           DEKERRR+  +KRRVAPEGCFTVYVGAERQRFVI+TECANHPLFRSLLEEAEAEYGYNCQ
Sbjct: 61  DEKERRRS--RKRRVAPEGCFTVYVGAERQRFVIKTECANHPLFRSLLEEAEAEYGYNCQ 120

Query: 121 APLSLPCDVESFYSVLMEMDYDGAADLRRGCGYPTPKRFGSYHLLSPRSSSLV 174
           APLSLPCDVESFYSVLMEMD D A DLRRGCGYPTPKRFG Y+LLSPRSSSLV
Sbjct: 121 APLSLPCDVESFYSVLMEMDDDSAGDLRRGCGYPTPKRFG-YNLLSPRSSSLV 170

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BLAST of Clc06G02070 vs. NCBI nr
Match: XP_008459884.1 (PREDICTED: auxin-responsive protein SAUR36 [Cucumis melo] >XP_016902515.1 PREDICTED: auxin-responsive protein SAUR36 [Cucumis melo] >KAA0039836.1 auxin-responsive protein SAUR36 [Cucumis melo var. makuwa] >TYK24663.1 auxin-responsive protein SAUR36 [Cucumis melo var. makuwa])

HSP 1 Score: 318.2 bits (814), Expect = 4.6e-83
Identity = 159/175 (90.86%), Postives = 165/175 (94.29%), Query Frame = 0


Query: 1   MDLNREKVKNKGLILKTWERCKSMGRGRRNPPSSAGIKRFLTRKTKSLPRLEVFSGGEDE 60
           MDL+REKVKNKGLILKTWERCKSMGRG+ N PSS  IKRFLTRKTKSLPRLEVFSGGEDE
Sbjct: 1   MDLSREKVKNKGLILKTWERCKSMGRGQGNSPSSTRIKRFLTRKTKSLPRLEVFSGGEDE 60

Query: 61  DEKERRRTFGQKRRVAPEGCFTVYVGAERQRFVIRTECANHPLFRSLLEEAEAEYGYNCQ 120
           DEKERRR   +KRRVAPEGCFTVYVGAERQRFVI+TECANHPLFRSLLEEAEAEYGYNCQ
Sbjct: 61  DEKERRRC--RKRRVAPEGCFTVYVGAERQRFVIKTECANHPLFRSLLEEAEAEYGYNCQ 120

Query: 121 APLSLPCDVESFYSVLMEMDYDGAADLRRGCGYPTPKRFGSYHLLSPRSSSLVVN 176
           APLSLPCDVESFYSVLMEMD D A+DLRRGCGYPTPKRFG Y+LLSPRSSSLVVN
Sbjct: 121 APLSLPCDVESFYSVLMEMDDDTASDLRRGCGYPTPKRFG-YNLLSPRSSSLVVN 172

[Close]

BLAST of Clc06G02070 vs. NCBI nr
Match: KAG6576118.1 (Auxin-responsive protein SAUR32, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014637.1 Auxin-responsive protein SAUR32, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 313.5 bits (802), Expect = 1.1e-81
Identity = 156/177 (88.14%), Postives = 165/177 (93.22%), Query Frame = 0


Query: 1   MDLNREKVKNKGLILKTWERCKSMGRGRRNPPSSAGIKRFLTRKTKSLPRLEVFSGGE-- 60
           MDL+REKVKNKGLILKTWERCK++GRG RN PSSAGIKRFLTRK+KS PRLE+ SGGE  
Sbjct: 1   MDLSREKVKNKGLILKTWERCKTIGRGGRNSPSSAGIKRFLTRKSKSWPRLELISGGEDK 60

Query: 61  DEDEKERRRTFGQKRRVAPEGCFTVYVGAERQRFVIRTECANHPLFRSLLEEAEAEYGYN 120
           DEDE+ER R++G+ RRVAPEGCFTVYVGAERQRFVI TE ANHPLFRSLLEEAEAEYGYN
Sbjct: 61  DEDEEERWRSYGRTRRVAPEGCFTVYVGAERQRFVIPTEYANHPLFRSLLEEAEAEYGYN 120

Query: 121 CQAPLSLPCDVESFYSVLMEMDYDGAADLRRGCGYPTPKRFGSYHLLSPRSSSLVVN 176
           CQAPLSLPCDVESFY VLMEMD DGAADLRRGCGYPTPKRFGSYHLLSPRSSSLVVN
Sbjct: 121 CQAPLSLPCDVESFYRVLMEMD-DGAADLRRGCGYPTPKRFGSYHLLSPRSSSLVVN 176

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BLAST of Clc06G02070 vs. ExPASy Swiss-Prot
Match: Q9SGU2 (Auxin-responsive protein SAUR71 OS=Arabidopsis thaliana OX=3702 GN=SAUR71 PE=2 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 3.1e-10
Identity = 34/76 (44.74%), Postives = 46/76 (60.53%), Query Frame = 0


Query: 62  EKERRRTFGQKRRV-APEGCFTVYVGAERQRFVIRTECANHPLFRSLLEEAEAEYGYNCQ 121
           E +R RT  +K +   PEG   VYVG E +RFV+  E  NHP+F +LL+++  EYGY  Q
Sbjct: 23  ESQRGRTKKEKHKSWVPEGHVPVYVGHEMERFVVNAELLNHPVFVALLKQSAQEYGYEQQ 82

Query: 122 APLSLPCDVESFYSVL 137
             L +PC V  F  +L
Sbjct: 83  GVLRIPCHVLVFERIL 98

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BLAST of Clc06G02070 vs. ExPASy Swiss-Prot
Match: Q9ZUZ3 (Auxin-responsive protein SAUR32 OS=Arabidopsis thaliana OX=3702 GN=SAUR32 PE=2 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.7e-09
Identity = 30/72 (41.67%), Postives = 45/72 (62.50%), Query Frame = 0


Query: 72  KRRVAPEGCFTVYVGA---ERQRFVIRTECANHPLFRSLLEEAEAEYGYNCQAPLSLPCD 131
           K +  P+GC  + VG+   E+QRF++     NHPLF  LL+EAE EYG++ +  +++PC 
Sbjct: 20  KVKDVPKGCLAIKVGSQGEEQQRFIVPVLYFNHPLFMQLLKEAEDEYGFDQKGTITIPCH 79

Query: 132 VESFYSVLMEMD 141
           VE F  V   +D
Sbjct: 80  VEEFRYVQALID 91

[Close]

BLAST of Clc06G02070 vs. ExPASy Swiss-Prot
Match: Q9SA49 (Auxin-responsive protein SAUR41 OS=Arabidopsis thaliana OX=3702 GN=SAUR41 PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.7e-08
Identity = 33/80 (41.25%), Postives = 44/80 (55.00%), Query Frame = 0


Query: 73  RRV--APEGCFTVYVGAERQRFVIRTECANHPLFRSLLEEAEAEYGYNCQAPLSLPCDVE 132
           RRV   P G   VYVG E +RFV+  E  NHP+F  LL  +  EYGY  +  L +PC V 
Sbjct: 49  RRVNTVPAGHVPVYVGEEMERFVVSAELMNHPIFVGLLNRSAQEYGYAQKGVLHIPCHVI 108

Query: 133 SFYSVLMEM---DYDGAADL 148
            F  V+  +    ++G+ DL
Sbjct: 109 VFERVVETLRLGGFEGSGDL 128

[Close]

BLAST of Clc06G02070 vs. ExPASy Swiss-Prot
Match: P0DKL1 (Auxin-responsive protein SAUR50 OS=Helianthus annuus OX=4232 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.7e-08
Identity = 25/63 (39.68%), Postives = 40/63 (63.49%), Query Frame = 0


Query: 77  PEGCFTVYVGAERQRFVIRTECANHPLFRSLLEEAEAEYGYNCQAPLSLPC---DVESFY 136
           P+G F VYVG  R R+++   C +HP F+ LL+ +E E+G+N    + +PC   D  SF+
Sbjct: 40  PKGHFVVYVGERRNRYIVPISCLDHPTFQDLLQRSEEEFGFNHDMGIIIPCQEVDFLSFF 99

[Close]

BLAST of Clc06G02070 vs. ExPASy Swiss-Prot
Match: Q9LTV3 (Auxin-responsive protein SAUR72 OS=Arabidopsis thaliana OX=3702 GN=SAUR72 PE=1 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.9e-08
Identity = 27/60 (45.00%), Postives = 35/60 (58.33%), Query Frame = 0


Query: 77  PEGCFTVYVGAERQRFVIRTECANHPLFRSLLEEAEAEYGYNCQAPLSLPCDVESFYSVL 136
           PEG   VYVG E +RFV+  E  NHP+F  LL  +  EYGY  +  L +PC V  F  ++
Sbjct: 51  PEGHVPVYVGDEMERFVVSAELLNHPVFIGLLNRSAQEYGYEQKGVLQIPCHVLVFERIM 110

[Close]

BLAST of Clc06G02070 vs. ExPASy TrEMBL
Match: A0A0A0KC76 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G092560 PE=3 SV=1)

HSP 1 Score: 325.1 bits (832), Expect = 1.8e-85
Identity = 161/175 (92.00%), Postives = 167/175 (95.43%), Query Frame = 0


Query: 1   MDLNREKVKNKGLILKTWERCKSMGRGRRNPPSSAGIKRFLTRKTKSLPRLEVFSGGEDE 60
           MDL+REKVKNKGLILKTWERCKSMGRG+RN PSS GIKRFLTRKTKSLPRLEVFSGGEDE
Sbjct: 1   MDLSREKVKNKGLILKTWERCKSMGRGQRNSPSSTGIKRFLTRKTKSLPRLEVFSGGEDE 60

Query: 61  DEKERRRTFGQKRRVAPEGCFTVYVGAERQRFVIRTECANHPLFRSLLEEAEAEYGYNCQ 120
           DEKERRR+  +KRRVAPEGCFTVYVGAERQRFVI+TECANHPLFRSLLEEAEAEYGYNCQ
Sbjct: 61  DEKERRRS--RKRRVAPEGCFTVYVGAERQRFVIKTECANHPLFRSLLEEAEAEYGYNCQ 120

Query: 121 APLSLPCDVESFYSVLMEMDYDGAADLRRGCGYPTPKRFGSYHLLSPRSSSLVVN 176
           APLSLPCDVESFYSVLMEMD D A DLRRGCGYPTPKRFG Y+LLSPRSSSLVVN
Sbjct: 121 APLSLPCDVESFYSVLMEMDDDSAGDLRRGCGYPTPKRFG-YNLLSPRSSSLVVN 172

[Close]

BLAST of Clc06G02070 vs. ExPASy TrEMBL
Match: A0A1S4E3G0 (auxin-responsive protein SAUR36 OS=Cucumis melo OX=3656 GN=LOC103498869 PE=3 SV=1)

HSP 1 Score: 318.2 bits (814), Expect = 2.2e-83
Identity = 159/175 (90.86%), Postives = 165/175 (94.29%), Query Frame = 0


Query: 1   MDLNREKVKNKGLILKTWERCKSMGRGRRNPPSSAGIKRFLTRKTKSLPRLEVFSGGEDE 60
           MDL+REKVKNKGLILKTWERCKSMGRG+ N PSS  IKRFLTRKTKSLPRLEVFSGGEDE
Sbjct: 1   MDLSREKVKNKGLILKTWERCKSMGRGQGNSPSSTRIKRFLTRKTKSLPRLEVFSGGEDE 60

Query: 61  DEKERRRTFGQKRRVAPEGCFTVYVGAERQRFVIRTECANHPLFRSLLEEAEAEYGYNCQ 120
           DEKERRR   +KRRVAPEGCFTVYVGAERQRFVI+TECANHPLFRSLLEEAEAEYGYNCQ
Sbjct: 61  DEKERRRC--RKRRVAPEGCFTVYVGAERQRFVIKTECANHPLFRSLLEEAEAEYGYNCQ 120

Query: 121 APLSLPCDVESFYSVLMEMDYDGAADLRRGCGYPTPKRFGSYHLLSPRSSSLVVN 176
           APLSLPCDVESFYSVLMEMD D A+DLRRGCGYPTPKRFG Y+LLSPRSSSLVVN
Sbjct: 121 APLSLPCDVESFYSVLMEMDDDTASDLRRGCGYPTPKRFG-YNLLSPRSSSLVVN 172

[Close]

BLAST of Clc06G02070 vs. ExPASy TrEMBL
Match: A0A5D3DLZ0 (Auxin-responsive protein SAUR36 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G002130 PE=3 SV=1)

HSP 1 Score: 318.2 bits (814), Expect = 2.2e-83
Identity = 159/175 (90.86%), Postives = 165/175 (94.29%), Query Frame = 0


Query: 1   MDLNREKVKNKGLILKTWERCKSMGRGRRNPPSSAGIKRFLTRKTKSLPRLEVFSGGEDE 60
           MDL+REKVKNKGLILKTWERCKSMGRG+ N PSS  IKRFLTRKTKSLPRLEVFSGGEDE
Sbjct: 1   MDLSREKVKNKGLILKTWERCKSMGRGQGNSPSSTRIKRFLTRKTKSLPRLEVFSGGEDE 60

Query: 61  DEKERRRTFGQKRRVAPEGCFTVYVGAERQRFVIRTECANHPLFRSLLEEAEAEYGYNCQ 120
           DEKERRR   +KRRVAPEGCFTVYVGAERQRFVI+TECANHPLFRSLLEEAEAEYGYNCQ
Sbjct: 61  DEKERRRC--RKRRVAPEGCFTVYVGAERQRFVIKTECANHPLFRSLLEEAEAEYGYNCQ 120

Query: 121 APLSLPCDVESFYSVLMEMDYDGAADLRRGCGYPTPKRFGSYHLLSPRSSSLVVN 176
           APLSLPCDVESFYSVLMEMD D A+DLRRGCGYPTPKRFG Y+LLSPRSSSLVVN
Sbjct: 121 APLSLPCDVESFYSVLMEMDDDTASDLRRGCGYPTPKRFG-YNLLSPRSSSLVVN 172

[Close]

BLAST of Clc06G02070 vs. ExPASy TrEMBL
Match: A0A6J1GPI0 (uncharacterized protein LOC111456287 OS=Cucurbita moschata OX=3662 GN=LOC111456287 PE=3 SV=1)

HSP 1 Score: 311.2 bits (796), Expect = 2.7e-81
Identity = 155/177 (87.57%), Postives = 164/177 (92.66%), Query Frame = 0


Query: 1   MDLNREKVKNKGLILKTWERCKSMGRGRRNPPSSAGIKRFLTRKTKSLPRLEVFSGGE-- 60
           MDL+REKVKNKGLILKTWERCK++GRG RN PSSA IKRFLTRK+KS PRLE+ SGGE  
Sbjct: 1   MDLSREKVKNKGLILKTWERCKTIGRGGRNSPSSAAIKRFLTRKSKSWPRLELISGGEDK 60

Query: 61  DEDEKERRRTFGQKRRVAPEGCFTVYVGAERQRFVIRTECANHPLFRSLLEEAEAEYGYN 120
           DEDE+ER R++G+ RRVAPEGCFTVYVGAERQRFVI TE ANHPLFRSLLEEAEAEYGYN
Sbjct: 61  DEDEEERWRSYGRTRRVAPEGCFTVYVGAERQRFVIPTEYANHPLFRSLLEEAEAEYGYN 120

Query: 121 CQAPLSLPCDVESFYSVLMEMDYDGAADLRRGCGYPTPKRFGSYHLLSPRSSSLVVN 176
           CQAPLSLPCDVESFY VLMEMD DGAADLRRGCGYPTPKRFGSYHLLSPRSSSLVVN
Sbjct: 121 CQAPLSLPCDVESFYRVLMEMD-DGAADLRRGCGYPTPKRFGSYHLLSPRSSSLVVN 176

[Close]

BLAST of Clc06G02070 vs. ExPASy TrEMBL
Match: A0A6J1KVV9 (auxin-responsive protein SAUR36-like OS=Cucurbita maxima OX=3661 GN=LOC111498073 PE=3 SV=1)

HSP 1 Score: 306.2 bits (783), Expect = 8.7e-80
Identity = 151/176 (85.80%), Postives = 161/176 (91.48%), Query Frame = 0


Query: 1   MDLNREKVKNKGLILKTWERCKSMGRGRRNPPSSAGIKRFLTRKTKSLPRLEVFSGGEDE 60
           MD +REKVKNKGLI KTWERCKS GRGRR  PSSAGIKRFLTRKTKS PRLEV SGGED+
Sbjct: 1   MDFSREKVKNKGLIFKTWERCKSFGRGRRTSPSSAGIKRFLTRKTKSWPRLEVISGGEDK 60

Query: 61  DEKERRRTFGQKRRVAPEGCFTVYVGAERQRFVIRTECANHPLFRSLLEEAEAEYGYNCQ 120
           DE+ERRR+FG+KRRVAPEGCFTVYVGA+RQRFVIRTE ANHPLFRSLL+EAEAEYGYNCQ
Sbjct: 61  DEEERRRSFGRKRRVAPEGCFTVYVGADRQRFVIRTEYANHPLFRSLLKEAEAEYGYNCQ 120

Query: 121 APLSLPCDVESFYSVLMEMDYDGAADLRRGCGYPTPKRFGSYHLLSP-RSSSLVVN 176
           APLSLPCDVESFY VLMEMD DGAAD+R GCG+PTPKR GSYHL SP  SSSL+VN
Sbjct: 121 APLSLPCDVESFYGVLMEMD-DGAADVRCGCGHPTPKRIGSYHLPSPGSSSSLIVN 175

[Close]

BLAST of Clc06G02070 vs. TAIR 10
Match: AT5G50760.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 89.0 bits (219), Expect = 4.2e-18
Identity = 52/129 (40.31%), Postives = 68/129 (52.71%), Query Frame = 0


Query: 11  KGLILKTWERCKSMGRGRRNPPSSAGIKRFLTRKTKSLPRLEVFSGGEDEDEKERRRTFG 70
           K  ILKTW + KS G       SS+    F   K+KS            ED K       
Sbjct: 2   KNPILKTWRKVKSFGH-----TSSSTTPSF--TKSKS-----CHGSFRLEDAKSNESKGK 61

Query: 71  QKRRVAPEGCFTVYVGAERQRFVIRTECANHPLFRSLLEEAEAEYGYNCQAPLSLPCDVE 130
            K+     G FTVYVG  +QR V++T+  NHPLF++LLE+AE EYGY    P+ LPC+V+
Sbjct: 62  PKKESPSHGFFTVYVGPTKQRIVVKTKLLNHPLFKNLLEDAETEYGYRRDGPIVLPCEVD 118

Query: 131 SFYSVLMEM 140
            F+  L +M
Sbjct: 122 FFFKALADM 118

[Close]

BLAST of Clc06G02070 vs. TAIR 10
Match: AT3G61900.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 71.6 bits (174), Expect = 6.9e-13
Identity = 41/104 (39.42%), Postives = 55/104 (52.88%), Query Frame = 0


Query: 77  PEGCFTVYVGA---ERQRFVIRTECANHPLFRSLLEEAEAEYGYNCQAPLSLPCDVESFY 136
           P+GC  + VG+   E+QRFV+     NHPLF  LL EAE EYG+  +  +++PC VE F 
Sbjct: 31  PKGCLAIKVGSKEEEKQRFVVPVFYFNHPLFMQLLREAEEEYGFEQKGTITIPCHVEVFR 90

Query: 137 SVL------MEMDYDGAADLRRGCGYPTPKRFGSYHLLSPRSSS 172
            V         +D D  A  + GCG     + G  H +  RSSS
Sbjct: 91  YVQDMINRERSLDDDDDASKQTGCG----AKHGLTHKIRSRSSS 130

[Close]

BLAST of Clc06G02070 vs. TAIR 10
Match: AT5G20810.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 67.4 bits (163), Expect = 1.3e-11
Identity = 43/129 (33.33%), Postives = 74/129 (57.36%), Query Frame = 0


Query: 14  ILKTWERCKSMGRGRRNPPSSAGIKRFLTRKTKSLPR--LEVFSGGEDEDEKERRRTFGQ 73
           IL+ W+   ++G     PP +AG K+ +   + ++ +  L+V +G  DE+  +      +
Sbjct: 21  ILQKWQTV-TIGPKSEVPPLAAG-KQAVAMISPAINKRLLDVKNGDSDEETCQS----PE 80

Query: 74  KRRVAPEGCFTVYVGAERQRFVIRTECANHPLFRSLLEEAEAEYGYNCQAPLSLPCDVES 133
                P+G   VYVG E +RF+I T   +H LF+ LLE+AE E+G++    L++PC+VE+
Sbjct: 81  PPHDVPKGNLAVYVGPELRRFIIPTSYLSHSLFKVLLEKAEEEFGFDQSGALTIPCEVET 140

Query: 134 FYSVLMEMD 141
           F  +L  M+
Sbjct: 141 FKYLLKCME 143

[Close]

BLAST of Clc06G02070 vs. TAIR 10
Match: AT5G20810.2 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 67.4 bits (163), Expect = 1.3e-11
Identity = 43/129 (33.33%), Postives = 74/129 (57.36%), Query Frame = 0


Query: 14  ILKTWERCKSMGRGRRNPPSSAGIKRFLTRKTKSLPR--LEVFSGGEDEDEKERRRTFGQ 73
           IL+ W+   ++G     PP +AG K+ +   + ++ +  L+V +G  DE+  +      +
Sbjct: 21  ILQKWQTV-TIGPKSEVPPLAAG-KQAVAMISPAINKRLLDVKNGDSDEETCQS----PE 80

Query: 74  KRRVAPEGCFTVYVGAERQRFVIRTECANHPLFRSLLEEAEAEYGYNCQAPLSLPCDVES 133
                P+G   VYVG E +RF+I T   +H LF+ LLE+AE E+G++    L++PC+VE+
Sbjct: 81  PPHDVPKGNLAVYVGPELRRFIIPTSYLSHSLFKVLLEKAEEEFGFDQSGALTIPCEVET 140

Query: 134 FYSVLMEMD 141
           F  +L  M+
Sbjct: 141 FKYLLKCME 143

[Close]

BLAST of Clc06G02070 vs. TAIR 10
Match: AT1G56150.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 66.6 bits (161), Expect = 2.2e-11
Identity = 34/76 (44.74%), Postives = 46/76 (60.53%), Query Frame = 0


Query: 62  EKERRRTFGQKRRV-APEGCFTVYVGAERQRFVIRTECANHPLFRSLLEEAEAEYGYNCQ 121
           E +R RT  +K +   PEG   VYVG E +RFV+  E  NHP+F +LL+++  EYGY  Q
Sbjct: 23  ESQRGRTKKEKHKSWVPEGHVPVYVGHEMERFVVNAELLNHPVFVALLKQSAQEYGYEQQ 82

Query: 122 APLSLPCDVESFYSVL 137
             L +PC V  F  +L
Sbjct: 83  GVLRIPCHVLVFERIL 98

The following BLAST results are available for this feature:

BLAST of Clc06G02070 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004140543.1	3.7e-85	92.00	protein SMALL AUXIN UP-REGULATED RNA 10 [Cucumis sativus]	[more]
XP_038874823.1	6.4e-85	90.23	auxin-responsive protein SAUR50 [Benincasa hispida]	[more]
KGN46442.2	5.4e-84	91.91	hypothetical protein Csa_005435 [Cucumis sativus]	[more]
XP_008459884.1	4.6e-83	90.86	PREDICTED: auxin-responsive protein SAUR36 [Cucumis melo] >XP_016902515.1 PREDIC...	[more]
KAG6576118.1	1.1e-81	88.14	Auxin-responsive protein SAUR32, partial [Cucurbita argyrosperma subsp. sororia]...	[more]

BLAST of Clc06G02070 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SGU2	3.1e-10	44.74	Auxin-responsive protein SAUR71 OS=Arabidopsis thaliana OX=3702 GN=SAUR71 PE=2 S...	[more]
Q9ZUZ3	2.7e-09	41.67	Auxin-responsive protein SAUR32 OS=Arabidopsis thaliana OX=3702 GN=SAUR32 PE=2 S...	[more]
Q9SA49	1.7e-08	41.25	Auxin-responsive protein SAUR41 OS=Arabidopsis thaliana OX=3702 GN=SAUR41 PE=2 S...	[more]
P0DKL1	1.7e-08	39.68	Auxin-responsive protein SAUR50 OS=Helianthus annuus OX=4232 PE=3 SV=1	[more]
Q9LTV3	2.9e-08	45.00	Auxin-responsive protein SAUR72 OS=Arabidopsis thaliana OX=3702 GN=SAUR72 PE=1 S...	[more]

BLAST of Clc06G02070 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KC76	1.8e-85	92.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G092560 PE=3 SV=1	[more]
A0A1S4E3G0	2.2e-83	90.86	auxin-responsive protein SAUR36 OS=Cucumis melo OX=3656 GN=LOC103498869 PE=3 SV=...	[more]
A0A5D3DLZ0	2.2e-83	90.86	Auxin-responsive protein SAUR36 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A6J1GPI0	2.7e-81	87.57	uncharacterized protein LOC111456287 OS=Cucurbita moschata OX=3662 GN=LOC1114562...	[more]
A0A6J1KVV9	8.7e-80	85.80	auxin-responsive protein SAUR36-like OS=Cucurbita maxima OX=3661 GN=LOC111498073...	[more]

BLAST of Clc06G02070 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G50760.1	4.2e-18	40.31	SAUR-like auxin-responsive protein family	[more]
AT3G61900.1	6.9e-13	39.42	SAUR-like auxin-responsive protein family	[more]
AT5G20810.1	1.3e-11	33.33	SAUR-like auxin-responsive protein family	[more]
AT5G20810.2	1.3e-11	33.33	SAUR-like auxin-responsive protein family	[more]
AT1G56150.1	2.2e-11	44.74	SAUR-like auxin-responsive protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003676	Small auxin-up RNA	PFAM	PF02519	Auxin_inducible	coord: 69..136 e-value: 2.8E-22 score: 78.7
None	No IPR available	PANTHER	PTHR31374:SF118	OS02G0305950 PROTEIN	coord: 10..143
None	No IPR available	PANTHER	PTHR31374	AUXIN-INDUCED PROTEIN-LIKE-RELATED	coord: 10..143

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc06G02070.1	Clc06G02070.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009733	response to auxin
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0016491	oxidoreductase activity