Clc06G01160 (gene) Watermelon (cordophanus) v2

Overview
NameClc06G01160
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionTrigger factor-like isoform X1
LocationClcChr06: 1001296 .. 1010461 (-)
RNA-Seq ExpressionClc06G01160
SyntenyClc06G01160
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAAAGAAAAAAACAGAAGGAAAAAAAAAAGCCACAACGGCATCGTATTTGGACTCGGATAAGTCTCTACTCTGAGAACCGGAGAAAGAAACTTCAAACTGAAGCACTGAGCCGCGCTTGGAAAAATGGTGTCCGCCACCGCCACCGCCACCGCAACCGCAACTGCAACGGTAACCAACATTGCTTCAGAATTCCGGCGGCCAATATTCACCAAAGTAAGCAATTCTATGCATTAGCCTTTTTCGATTCTAAATATTCCTCAGAAACCAAACCAATGACTCGAATCTCTAAGCTCCACCGCATTTTGCGGCCTTCCGATAAGTTTAGGATATTTTCACTTCAAATTCGCTTTTTGTGTTTCAGGTTCCTGTTAAGGGCTATTGCCGCAATGCCCTGGTTTGTCTAAACTTTGGAGGTGTTGAATTTGATAATGTACAAGATGGGTTGTGTAGGAGGTAAACATGTATTTTGGTTAGTTTCCAATTTCGATGTTGATTCTTAATTTCTTGTTTGTTTAATGAGAAGTGTAATGACATATATAGCTCGTTCGTTTTCTATTTGGTGAATTGTGCATAAAAACTGATGGATAGAAGTGGGGAACATTTTTTCATTGCCAGGTCGTCATTTTCTTATAGTCCCCATAAAATGGGTTCCAGATTTTTGTCCAAACCGACGTCCGTAGCTAGTTCAGGTAATTCTGCATACTTCGTTATCATCTTGGTTGAACCTTTTACAGTAAAGACTGAATTACAAATTTTAAACTATAAGAACTAAGTCGTTTCATACTTAAAGTTGATTAAGTCGGTTATTGGAAATTTTAATCTACAGGAATCAAATTGTTAGATACTGAGGTTCGTGGACTAATTGAATTGTTTTATTTGATAGTATATTTTAACCTTTACAATTATTCTTTTCTGCTCGTCCCCTTGTTTTCTGGGAGTTTAGTTTATTTTTAATGTTGGATGGGAAGAGAAGTACAAAAATAGAGTAACTGGGAAGCGAATGACACAAGTAAGATAGTATTACTGGTGAATTCCTGTTTAGTATGCACGAAGAGAAGCAAGCATTATTATCTTCTATATCATGTATTAGAAAATTGTAATAAATCGTTGGTAAGAACACAATAACGGTTTTGAATATTGCAAATCATGCTTATGTAACATGATTGTAGCCCTAATAAATCATGGGTAAGAAACACAATAGCAGATTTGGTAAAACTTATCCCCGTTTTGTCATTATTTTGTGAGTTATTAACAGTCACTTGTCAATCAACTCTAGTTGTACAAAAAAGACCCTTTTCAGCTTAGGCTTATGTTGTTTTGTTGGTCTTCTGTTTTGATGTCATAGGTTTCGAGGCAGCCATCACAGATTACAAAGGCAATGCAATAACGTTGAAAAATGCTAAAGTAGTTGTAGAATCTGAAGATGAAAACCAGATACAAGTAAGGCTTACCCATGTGAACTAGTTGAAGCATCCATTACAATTTTTGTTGCAGCATAGAGTTTTTTTTTTTTTTTTTTTCCTTTCCTTTCTTTTCTTTTTTTAATTAAACTTTAAGAATCAATTTTGTTAATGGTATGAAATTACGAAAGAAGGGGGAAAAACCTACTCCAAATGAGACTCTCCAATTGGATATAAAAGAAGCATGGTGAAAGAGATGAGAGCATTCACACTAAGAAATTGTCGTAAAAGCGATAGAAGAAAGCCCTTGTAAAGTGCATCCATAAGAGCTTTTTTTCTTAGTTGAAAGGATGACCCCCAAAAACATACTAGAGGAGGAGGAGGAGATTTTGAGGGAGAGCTGTATGTCGACCCCCCAAAGCATGATAGCTGCCCCCATAATTTTGATGCCATCAATATAAAAAGGACACATTTTACTTCCATTTACTTGCATTCTAGATTGTTTGCAACAATAATATTGGGTAAGAAACAGGATTATATTATTGACAGAAGAGAGAAAAACAGCCTAAGGGCCAGGGAAGAGGGATCCACCTCCCAACACCTACTAAAAGAGGGCTTTCATATTGCAAAGGAGCATGGTAAGGTTGTATTACAAAAGAACTTTCTGTGTTTTATACACCACCAAGATAACATTAGCTGTGCAGTTATACAAAAAATATAAAAAATGAGAGGATGTATCTTCAAATGTTCATTGATTCCTTTCCAAGCAAACATGCCATAGTAAGACCGTAGTCTCACAGTTCCACACGAATTCCACCCTCTTTGCCAACTCCCAACCAGATAAAACTTCAAGGAGCCAGACATCCACTTGCTTAGGCAGATAGCAAGAAATGCCAAAAACTTCAACACAGCAAAAACCCAACCTCTAGCAACAGAAGGACAGTGAAGAAAAAGCTGATAAATAAATTATGAGTTTCCCAGTCAGAGAATAATTTGACGATGAAAATGGTCTTGTGGTTACCGTCTAATTTGACAATGAAAATGGCCCCCATCCTTTTGAATGAGTGTCTAAAGGGATTAAAGGTATTCACTAGGATTTGTGGAAAGATATTTCAAAACGGCTTCGTTCTTTCATTCACTTGGTTCGTGGTGTGGTGGGGGAGGGGAGCGATACTTACGTTGGGGAAGTTCATTGGGTGGGGGAGAAACCACTTTGTGTTAGTTTCCTCGATTGTATCACTTGTCATCTCTCAAGAATCATTTCGTTGTCGATTTTTTAGTGTGGTTTAGGAGCTCTTGCTCCTTTTCATTTGGGTTACGTCGTTCTCTTTCTAATAGAGAAACAATTGTTGTGGCTACTTTTCTTTCTTTACTCAAGGGCCACCCCTTTAGATTGGGGGGAAGGGATGTCAAATTTTGAAACCCCAATCCTTTGGATGGGTTCTCATGCAAGCCCTTCTTTCCTTATTTGGTTGATTCTTCCCCCTTAGTTGAGTCAGTTTTTAGTGCTTTGGAGGATTAAGGTCCCAAGAAAGGTAAGGTTCTTTATTTGGCCGGTTCTTCACTGCCGTGTTAACGCGTGTCTAGGCTTATCTGGAAGTTGCCTTTGTTTGTTTGGCCTTTCTGTTGTATTCTTTGTTGGAAGACGGAGGAAGACCTGGACCATATTCTTTGACATTGTGACTTTGCATGTGGTGTCTAGGATTCTTCTTTTCTAGATGTGTGGTATGAGATGCCAGTCCTATGATTGAGGAGTTCCTCCTCAATTTGCCTTTTGGGGAGAAAGGTCGATTTCTTTGGCTTGCTGGAGTGTGTGCGGTTTTATTATGGGTTTTCTGCTGTGAGCAGAATAGTTGGGTGTTTAGGGGAGTGGAGAGGGATCCTAGGGAGTTATGGGCCCTTGTTCGGTTTCATGTTTCTCTTTGGACTTCAATTTCGAAGACTTTTTTGTAATTATTCTATAGGTGTGATTTTGTATAGTTGGAGTCCCTTTTTGTAAAGAGAATCTCCCTCTTTTTGGGCTTGGTTTTTTTGTATGACCATGTATTCTTTCATTTTTTTCCTCAATGAAAGTTGTTATTTTCATATATTCATTTGAAGTTTATTCATTCTTATTCATCCTTCTTTCTTATTTGTAGGCTATTTATCATAAGCAGACATCAGCTTACTTTACTCCAAACCTCACCTGCACAAGTGTGTCTTTTCCAAGTCAAATAAGATACGGTCACAGAAAAATTTCTCTGAGGTAATTTCAATTTCATTCGACCAAATAATGTTTCTAATAATAACCCAGATTATGAATGATTGTGTCCCAAATTAGGAAGACTTCAGCATCTAATTGATTAACTCTGAACTTTTCTTTGATATGATGATGCTGATTGGTCGACCATCAAAGTTTACGAAACATGTAAACTCATAAGTGACTAGCTTTAATGGGAAATTTTGACTTCTAATCTGCATGCAAGTATAAATGCTCATGATCTGCTTCATTTTTCTCAATTGGATGTTTCACATCCTGTCCTGTTATTGAGTCACTCAAAGCCGAAAGTCGACATGGAGTATCATCTGAAATCACCAATTCACCATCAAGACGATGAATACACTTACGGATAGAATTTTCTTTTGTGGAGGAAAGAACCAGCTTTCATCTAAATGAAACTACAAAAAGGGCCACAAAAATCAGGAACATGGTAAAATAGAATTAAAAGAATGAATGCTAACTATGGAATCCCCAAAAACAAACAGAGGCACATGATGAAGCTGTTGATTGTTTGTAGTTTTTGTTTATGGTATCAACTATGGAATCCTGTTAGATACCTTCTTCCCTGCACACAAAATGTATCTAACAAGCAACCCAAAGACAGAAATCCCAGCCAAAAGCTCAAAGTTTATTTATCAACAAGGATCATTCACAAGAGAAATATCCCAAGTTCAGGACCAGTCACAAGATGATAGAAAGAAGAAATAGATGATAGCAAAAGAAGAAATAGATGATAGCAAAAAAAAAAAAAGGTAACAAGGTGAGAAATTCGAGAGTGCCTCCCTCTCCAAGCTTCATTCAGCTCCTCAAAATTTCCATGCCTCCAAATGCTCCCCCAAAACCCCTCATAAACCTCTCAGCTGTTGGTCCCACTGGTCCCCCCTTCTCTAACCGAATTTGCAGCCACAATCTACTTGTTATTTCCTCTTTTACCCTTCTTATGATATGTGTGTATGATCGGGGGGTCTAACAAATCCCCAAAAACAAACAGAGGCACATGATGCTGCAGCTGTTGATCCTGGTTGCAAACAGACCCCAGAGATAAAAAGATGAACTATAACACACATAAACACAAGTTTGAATTCACCATGAAATAACTTTGGTTCACATTTAGTTTGATAGCTCAAGCTGCTACAATTCGTTTATAGTGAGAAGAAAGCAATTTTGAAATGCCATTGACCTTGACTTGAAGTTGATGAAAATGATATATTTGGTTGTGTTCATTGTAGAGATTAGAGATAGTGTTTTGTCTTATAGAAAGGAAATTCGTTCTTGATCATCAAGAAACACATTCTAAAAATGTCTACTTTCTAAGCTACACTTCGGCTGGTCTCTGGGATGCCCACAAACCACATTGTCTCATGTCGAACACAAAAGGTTAAATCATTAAAGAAAGAAAATAAGGAAGGAGGGGAGAAAGAAGGGAGGAGGGGAGAAAGGAGGAGAGAGAAGGGAAGAGAGAGAAGAGAACTTTTTAAAAAAAAAAATTAAATGTTTTAAAGCAATAAAAATATTATTCCAAACAACTATTCCTAAAAACTCTGAGGACTAAAAAGGTACATTTTGGAACTTTAGAACCAAACACACCTATTACGAAAAACTCGGAGACTAAAAAGTTATTTTTCCTTTGAACATTTTACAAATTCAGAATTTAGCATGTGATCTAGTAGGTGGGTTATTAGTATTAATTGGGGAGGAAATAATATTGCATGGTTTGAAATTTAAACCATATGCTCCAAACTAAAATATTTAAGCAAATAAGTTATTGCAGGCTTATTGGTCTTTTTAGTATATTCTTAATACTTTGAGATGAATGAATCCAACAATTAGTCATTAAGGCAATCGGCACGATGGTTAGATTTTCATTTGGAAATATTTTGATTGTTTAAAAAGAGATTGACATATTGACATCATTTATGACTACTTCATCTAATTGAGATTGCGTGTAAGTCATTTCAACTGTCCAACTGACGTATGTAGCCATAATCATTTGTATGGTTTTGAAAGACAAGCGGTGGTCTATGTTCCTAATTATAAACGTTATTTGTTCGTTCTATCTACAGTAAAAATAACAGATATCTTCCAGCTGCTTGTGCTGTGTTATCAGGTTATAATACATTTCCTTCTGTACCAAGAGCAATTTTTAAAATTTCCATTTGTGTGAGGACAATGTTGGATCAAACTTTTAATTTTATTGTGAGCAGAAGATGTGAGTGTTTCTTCTTCTCATTTTGAAGACTTCTCCGTCACTAATGTTACTAATACAACTGAGAATAAAGAACTAAAGGTATGAAACACGGTGAGTTTTATTCTCAGATTCCTTGTATCTATAACCCTCAGATTTCTATTGTTCGTTTAAATCCTGTTTGGATTTTTGAATTTTCAGTTAGTTTGTTTTTGGACCTAAACTTTAAAATATTATGTTTTCGTTACATTACTTTTAGATATTCTATTTAGTCCCTAGAAACTATTCTAGTCCTTGCCATTAATAATTCATTAGTCATTTTTAAAAAATTACTTCATTTCGAAATCCAAAATTGAACCTACTTGTGGCCAATGCACCTATCCACCACAGAAATCAGTCAACTGGTAAATAAGTAAGAGATATACCTATTTTAGGTTTCTGTTAAAAATTTATAAAAAAAACTAACATTCACACTTGAAATGATATTTGAGGCAAAAATTTAGGGATTTAAATAGTATATTTGAATGTCTAGGAACAAATTCAGGTTTGAAGTTGGATTTAAACCTTTATTATATTGTGCACAAAAATTTACTGTAAATTCAGGAACTTTTATTATTACCATAATTTTTTTTTTTTTTTTTTTTTTTTGGAGTTTGCAACCAGATTCGTGTTGAGGTGTCCGGAGCCAAAACTCGAGCAATTTTCAACAATGTGTTTGACAAAATGGTTGCTGAAGCCCAGCCTATTCCAGGTTTTAGAAGAGTGAAAGGAGGTAATATCCAAAGGCATTGTTTCTTCTTTGAGGTGCTCATTGTCTTCATTTTCATTTTCACAAAACCATCATATAAATGTTGTTGGCGAGTTGTTGTAAACAAGCACGATTAAGGTTATGGGTGATTGTGTTGTCTTCATCTTAGAGAGAGAGAAATGTTACTGTACGACCCCTTAACAATCAGAAAACTGCGTCCTTTAATTTGTTTCTCACACTGTTCTCTTTTTTCTTTTCCTTTCCCATTCATTTCATTGGACTTGACAATGCTGCTCTTCATTGGATGTCAGGAAAGACGCCAAACGTAAGTTTTCTTTCCTTTCAATCTCTTGGTTTTCAGGAAGTAACTACTGACGATCTTAATAGGGGAGACAGCTGAAGTAGAATCGCTGATAAGTTCATCATTTGTTCTCAACAGATACCCCGAGACATTCTATTAGAGATACTGGGACCTTCTAAGGTGTACAAACAAGTTATTAAGGAAGTTATCAACTCTACCGTTGCTGCATATGTGGAAAAGGTATGATATAATTGGTGTTTTCATATTCTGATTTTGAGCTGGGATTTATATAATCTTCATTAATCCGAATCTATTATATGATTTAATATTAAATTTATATTCACCCATTAACTTAAGTTTTTGGGTCAATCGGTGATTTAACATGGTATCAGTGTAAGTGGTCTACGAGGCCCCAACTAATATTGATTTCCACTTGTTGGATTTTCTACATTTTTCAAACCTACAAATGAGCATGAGTGTTATATGATATAATATTAAATTTACATTCATCAATTAGTTTAAGTTTTTGGGTCCATTGGTGATTTAACATAGTATCAGAGACTAGAGGGTAGGTGGTCTAGGAGGTCCTGCAATGTTATTTCCTCCTCAATTAATACTGATTTCCACTTATTGGATCCACATATTTCAAGCCTACAAATGAGTGGAAGTGTTAAATGATATAATATTAAATTTACCTTTACCTATCAATTTAAACTTTTGGGTCAATTGGTGATTTAACAGAAACCGTTTGCATGTTTTGCTCTAGCCTAAATGATGGATAAACTCAGGGTTGGAAATTGTTTTAGTATATAGAGTGGAACTCCTGCAATCTACAGTGAATAGTGAAAATGCTTTTACTTCCTGGTTGATATTTTCTACACAGAGATATAAATATAAATGGATGGATAGCAAATAGGAGAAGACCTCAAAGACCTCATAAAAAATATGGTCAGAATTCATAATAGTCTTGTCCAAATGGTCAGATTGATTATCTTGATCCATGGTAGACTTCAATCTCAACAATGGAGGTAGTACAAAAGATTTAAAACAATAAAAAGAAAAAAAGAAAAAAAAGAAAAAAAAAAAACCTCTTCTCTTTTCTATTGTGATTTATTGATTATTATAAGATAGATTTTTATATAGAAATAGGAACAGAGAGACCGAAAAGGACATCATAAATCAATGCTACTATATTAACTGAGTAGAGCCATGACTGAAATATAATAAAATAGAATCTGACTTTTTTGATATTCTTCCTATTATAAAATAACTCTGAAATATTCTTCATCTAAGTCGATCAGTAAAATCACTAAGTACTTCACACGTTTAGGAAGTGATTCTGAAATTGATAAAATCACCTAGGAATGAATCTTTCATCACTCAAAAGTAATTTAATATTTAAGCCATGTTTACTACTCCATAATCAAAATTGTTTCCATCATAATGGATTTTCTTTATTATTCATAATTCACATAATTTGTTAACTGATTTTTTGCAAACATATTTAAATCGTCTAACTTTTCATATTACAATTGATTGATTACGTTTATGGGAAAGTAAACGTGGCCTTAATTTTACACTTTTAAATTCAATTTTCATAACATTAAAATTATCAATTGATTGGAACCATGTATTAGAATGGTTTGGTAATGCCAAAAGTTGATTATGACCCTTCAGAATTACTCCCAAACATTCCATAAAAGGATTGCGTGACATACCCTACAAATGGATTAGAAATAACATTTCAGCAGGTTGGGGCATCCCATATCTTAGTGTTTTTTGTGTCCTTTTTGCTTTTCTGAAAAATTTTACCGTTGTAGCAGGAAGCTCTAAAAGTGGGTAAAGACTTGAGAATAGAGCAAAGCTATGAGGATCTTGAAGACCAATTTGAACCAGATGAAAAGTTCTTTTTTGATGCCATTATTCAGCTCAAGGAATCAAACTGAACTATTGAACTATTTTAACATACATTCACTCAAATTTAATGCAATTTTGCGAGGAATCTCCAAATTAGGTTGTGCATCATTTGTTTGTTTTGGCAGGGGGCTATCATCAATTCAACTGGGACCTCGAGCCAAGTGTTGGGTTGCTCTTGCAAAACATGTTGCTTTATACTACTATAAATAAATATTTTTCATTTTAGATAAAGTTTAAGAGACTTTAAGAGAATTTTAACGAATGACGCTAATAAATACTGTCTATTCGTGATAGATATTGATAGACATTTTGCTATATTTATAAATAAGTTGGTTCATTTTACTATATTTG

mRNA sequence

AAAAAAAGAAAAAAACAGAAGGAAAAAAAAAAGCCACAACGGCATCGTATTTGGACTCGGATAAGTCTCTACTCTGAGAACCGGAGAAAGAAACTTCAAACTGAAGCACTGAGCCGCGCTTGGAAAAATGGTGTCCGCCACCGCCACCGCCACCGCAACCGCAACTGCAACGGTAACCAACATTGCTTCAGAATTCCGGCGGCCAATATTCACCAAAGTTCCTGTTAAGGGCTATTGCCGCAATGCCCTGGTTTGTCTAAACTTTGGAGGTGTTGAATTTGATAATGTACAAGATGGGTTGTGTAGGAGGTCGTCATTTTCTTATAGTCCCCATAAAATGGGTTCCAGATTTTTGTCCAAACCGACGTCCGTAGCTAGTTCAGGTTTCGAGGCAGCCATCACAGATTACAAAGGCAATGCAATAACGTTGAAAAATGCTAAAGTAGTTGTAGAATCTGAAGATGAAAACCAGATACAAGCTATTTATCATAAGCAGACATCAGCTTACTTTACTCCAAACCTCACCTGCACAAGTGTGTCTTTTCCAAGTCAAATAAGATACGGTCACAGAAAAATTTCTCTGAGTAAAAATAACAGATATCTTCCAGCTGCTTGTGCTGTGTTATCAGAAGATGTGAGTGTTTCTTCTTCTCATTTTGAAGACTTCTCCGTCACTAATGTTACTAATACAACTGAGAATAAAGAACTAAAGATTCGTGTTGAGGTGTCCGGAGCCAAAACTCGAGCAATTTTCAACAATGTGTTTGACAAAATGGTTGCTGAAGCCCAGCCTATTCCAGGTTTTAGAAGAGTGAAAGGAGGTAATATCCAAAGGCATTGTTTCTTCTTTGAGATACCCCGAGACATTCTATTAGAGATACTGGGACCTTCTAAGGTGTACAAACAAGTTATTAAGGAAGTTATCAACTCTACCGTTGCTGCATATGTGGAAAAGGAAGCTCTAAAAGTGGGTAAAGACTTGAGAATAGAGCAAAGCTATGAGGATCTTGAAGACCAATTTGAACCAGATGAAAAGTTCTTTTTTGATGCCATTATTCAGCTCAAGGAATCAAACTGAACTATTGAACTATTTTAACATACATTCACTCAAATTTAATGCAATTTTGCGAGGAATCTCCAAATTAGGTTGTGCATCATTTGTTTGTTTTGGCAGGGGGCTATCATCAATTCAACTGGGACCTCGAGCCAAGTGTTGGGTTGCTCTTGCAAAACATGTTGCTTTATACTACTATAAATAAATATTTTTCATTTTAGATAAAGTTTAAGAGACTTTAAGAGAATTTTAACGAATGACGCTAATAAATACTGTCTATTCGTGATAGATATTGATAGACATTTTGCTATATTTATAAATAAGTTGGTTCATTTTACTATATTTG

Coding sequence (CDS)

ATGGTGTCCGCCACCGCCACCGCCACCGCAACCGCAACTGCAACGGTAACCAACATTGCTTCAGAATTCCGGCGGCCAATATTCACCAAAGTTCCTGTTAAGGGCTATTGCCGCAATGCCCTGGTTTGTCTAAACTTTGGAGGTGTTGAATTTGATAATGTACAAGATGGGTTGTGTAGGAGGTCGTCATTTTCTTATAGTCCCCATAAAATGGGTTCCAGATTTTTGTCCAAACCGACGTCCGTAGCTAGTTCAGGTTTCGAGGCAGCCATCACAGATTACAAAGGCAATGCAATAACGTTGAAAAATGCTAAAGTAGTTGTAGAATCTGAAGATGAAAACCAGATACAAGCTATTTATCATAAGCAGACATCAGCTTACTTTACTCCAAACCTCACCTGCACAAGTGTGTCTTTTCCAAGTCAAATAAGATACGGTCACAGAAAAATTTCTCTGAGTAAAAATAACAGATATCTTCCAGCTGCTTGTGCTGTGTTATCAGAAGATGTGAGTGTTTCTTCTTCTCATTTTGAAGACTTCTCCGTCACTAATGTTACTAATACAACTGAGAATAAAGAACTAAAGATTCGTGTTGAGGTGTCCGGAGCCAAAACTCGAGCAATTTTCAACAATGTGTTTGACAAAATGGTTGCTGAAGCCCAGCCTATTCCAGGTTTTAGAAGAGTGAAAGGAGGTAATATCCAAAGGCATTGTTTCTTCTTTGAGATACCCCGAGACATTCTATTAGAGATACTGGGACCTTCTAAGGTGTACAAACAAGTTATTAAGGAAGTTATCAACTCTACCGTTGCTGCATATGTGGAAAAGGAAGCTCTAAAAGTGGGTAAAGACTTGAGAATAGAGCAAAGCTATGAGGATCTTGAAGACCAATTTGAACCAGATGAAAAGTTCTTTTTTGATGCCATTATTCAGCTCAAGGAATCAAACTGA

Protein sequence

MVSATATATATATATVTNIASEFRRPIFTKVPVKGYCRNALVCLNFGGVEFDNVQDGLCRRSSFSYSPHKMGSRFLSKPTSVASSGFEAAITDYKGNAITLKNAKVVVESEDENQIQAIYHKQTSAYFTPNLTCTSVSFPSQIRYGHRKISLSKNNRYLPAACAVLSEDVSVSSSHFEDFSVTNVTNTTENKELKIRVEVSGAKTRAIFNNVFDKMVAEAQPIPGFRRVKGGNIQRHCFFFEIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKEALKVGKDLRIEQSYEDLEDQFEPDEKFFFDAIIQLKESN
Homology
[Close]
BLAST of Clc06G01160 vs. NCBI nr
Match: XP_008460017.1 (PREDICTED: trigger factor-like isoform X2 [Cucumis melo])

HSP 1 Score: 345.5 bits (885), Expect = 4.8e-91
Identity = 180/200 (90.00%), Postives = 187/200 (93.50%), Query Frame = 0 

Query: 117 QAIYHKQTSAYFTPNLTCTSVSFPSQIRYGHRKISLSKNNRYLPAACAVLSEDVSVSSSH 176
           +A+YHKQT+ YFTPNLTCTSVSFPSQI+YG  KISLSKNNRYLPAACAVLSE+ SVSSS 
Sbjct: 15  KAVYHKQTTDYFTPNLTCTSVSFPSQIKYGSSKISLSKNNRYLPAACAVLSENASVSSSQ 74

Query: 177 FEDFSVTNVTNTTENKELKIRVEVSGAKTRAIFNNVFDKMVAEAQPIPGFRRVKGGNIQR 236
           FEDFSVTNVTNTTENKELKIRVEVSG KTRAIFN VFD+MVAEAQPIPGFRRVKGGNIQR
Sbjct: 75  FEDFSVTNVTNTTENKELKIRVEVSGTKTRAIFNVVFDRMVAEAQPIPGFRRVKGGNIQR 134

Query: 237 HCFFFEIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKEALKVGKDLRIEQSYEDLED 296
                 IPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKEALKVGKDLRI+QSYEDLED
Sbjct: 135 KT--PNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKEALKVGKDLRIDQSYEDLED 194

Query: 297 QFEPDEKFFFDAIIQLKESN 317
           QFEPDEKFFFDAIIQLKESN
Sbjct: 195 QFEPDEKFFFDAIIQLKESN 212

[Close]
BLAST of Clc06G01160 vs. NCBI nr
Match: KAA0039923.1 (trigger factor-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 344.7 bits (883), Expect = 8.2e-91
Identity = 181/201 (90.05%), Postives = 188/201 (93.53%), Query Frame = 0 

Query: 117 QAIYHKQTSAYFTPNLTCTSVSFPSQIRYGHRKISLSKNNRYLPAACAVLSEDVSVSSSH 176
           +A+YHKQT+ YFTPNLTCTSVSFPSQI+YG  KISLSKNNRYLPAACAVLSE+ SVSSS 
Sbjct: 15  KAVYHKQTTDYFTPNLTCTSVSFPSQIKYGSSKISLSKNNRYLPAACAVLSENASVSSSQ 74

Query: 177 FEDFSVTNVTNTTENKELKIRVEVSGAKTRAIFNNVFDKMVAEAQPIPGFRRVKGGNIQR 236
           FEDFSVTNVTNTTENKELKIRVEVSG KTRAIFN VFD+MVAEAQPIPGFRRVKGGNIQR
Sbjct: 75  FEDFSVTNVTNTTENKELKIRVEVSGTKTRAIFNVVFDRMVAEAQPIPGFRRVKGGNIQR 134

Query: 237 HCFFFEIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEK-EALKVGKDLRIEQSYEDLE 296
           H     IPRDILLEILGPSKVYKQVIKEVINSTVAAYVEK EALKVGKDLRI+QSYEDLE
Sbjct: 135 H-----IPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKQEALKVGKDLRIDQSYEDLE 194

Query: 297 DQFEPDEKFFFDAIIQLKESN 317
           DQFEPDEKFFFDAIIQLKESN
Sbjct: 195 DQFEPDEKFFFDAIIQLKESN 210

[Close]
BLAST of Clc06G01160 vs. NCBI nr
Match: XP_008460016.1 (PREDICTED: trigger factor-like isoform X1 [Cucumis melo])

HSP 1 Score: 340.9 bits (873), Expect = 1.2e-89
Identity = 180/201 (89.55%), Postives = 187/201 (93.03%), Query Frame = 0 

Query: 117 QAIYHKQTSAYFTPNLTCTSVSFPSQIRYGHRKISLSKNNRYLPAACAVLSEDVSVSSSH 176
           +A+YHKQT+ YFTPNLTCTSVSFPSQI+YG  KISLSKNNRYLPAACAVLSE+ SVSSS 
Sbjct: 15  KAVYHKQTTDYFTPNLTCTSVSFPSQIKYGSSKISLSKNNRYLPAACAVLSENASVSSSQ 74

Query: 177 FEDFSVTNVTNTTENKELKIRVEVSGAKTRAIFNNVFDKMVAEAQPIPGFRRVKGGNIQR 236
           FEDFSVTNVTNTTENKELKIRVEVSG KTRAIFN VFD+MVAEAQPIPGFRRVKGGNIQR
Sbjct: 75  FEDFSVTNVTNTTENKELKIRVEVSGTKTRAIFNVVFDRMVAEAQPIPGFRRVKGGNIQR 134

Query: 237 HCFFFEIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEK-EALKVGKDLRIEQSYEDLE 296
                 IPRDILLEILGPSKVYKQVIKEVINSTVAAYVEK EALKVGKDLRI+QSYEDLE
Sbjct: 135 KT--PNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKQEALKVGKDLRIDQSYEDLE 194

Query: 297 DQFEPDEKFFFDAIIQLKESN 317
           DQFEPDEKFFFDAIIQLKESN
Sbjct: 195 DQFEPDEKFFFDAIIQLKESN 213

[Close]
BLAST of Clc06G01160 vs. NCBI nr
Match: XP_008460019.1 (PREDICTED: trigger factor-like isoform X4 [Cucumis melo])

HSP 1 Score: 337.4 bits (864), Expect = 1.3e-88
Identity = 176/200 (88.00%), Postives = 183/200 (91.50%), Query Frame = 0 

Query: 117 QAIYHKQTSAYFTPNLTCTSVSFPSQIRYGHRKISLSKNNRYLPAACAVLSEDVSVSSSH 176
           +A+YHKQT+ YFTPNLTCTSVSFPSQI+YG  KISLSKNNRYLPAACAVLSE+ SVSSS 
Sbjct: 15  KAVYHKQTTDYFTPNLTCTSVSFPSQIKYGSSKISLSKNNRYLPAACAVLSENASVSSSQ 74

Query: 177 FEDFSVTNVTNTTENKELKIRVEVSGAKTRAIFNNVFDKMVAEAQPIPGFRRVKGGNIQR 236
           FEDFSVTNVTNTTENKELKIRVEVSG KTRAIFN VFD+MVAEAQPIPGFRRVKGG    
Sbjct: 75  FEDFSVTNVTNTTENKELKIRVEVSGTKTRAIFNVVFDRMVAEAQPIPGFRRVKGGKTP- 134

Query: 237 HCFFFEIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKEALKVGKDLRIEQSYEDLED 296
                 IPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKEALKVGKDLRI+QSYEDLED
Sbjct: 135 -----NIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKEALKVGKDLRIDQSYEDLED 194

Query: 297 QFEPDEKFFFDAIIQLKESN 317
           QFEPDEKFFFDAIIQLKESN
Sbjct: 195 QFEPDEKFFFDAIIQLKESN 208

[Close]
BLAST of Clc06G01160 vs. NCBI nr
Match: XP_004140596.1 (uncharacterized protein LOC101211587 isoform X2 [Cucumis sativus] >KGN46334.1 hypothetical protein Csa_005501 [Cucumis sativus])

HSP 1 Score: 336.3 bits (861), Expect = 2.9e-88
Identity = 177/200 (88.50%), Postives = 182/200 (91.00%), Query Frame = 0 

Query: 117 QAIYHKQTSAYFTPNLTCTSVSFPSQIRYGHRKISLSKNNRYLPAACAVLSEDVSVSSSH 176
           +AIYHKQT+ YFTPNLTC  VSFPSQIRYG RKISLSKNNRYLPAACAVLSE+VSVSSS 
Sbjct: 15  KAIYHKQTTDYFTPNLTCIGVSFPSQIRYGSRKISLSKNNRYLPAACAVLSENVSVSSSQ 74

Query: 177 FEDFSVTNVTNTTENKELKIRVEVSGAKTRAIFNNVFDKMVAEAQPIPGFRRVKGGNIQR 236
           FEDFSVTNVTNT ENKELKIRVEVSGAKTRAIFN VFD+MVAEAQPIPGFRRVKGG    
Sbjct: 75  FEDFSVTNVTNTKENKELKIRVEVSGAKTRAIFNVVFDRMVAEAQPIPGFRRVKGGKTP- 134

Query: 237 HCFFFEIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKEALKVGKDLRIEQSYEDLED 296
                 IPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKEALKVGKDLRI+QSYEDLED
Sbjct: 135 -----NIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKEALKVGKDLRIDQSYEDLED 194

Query: 297 QFEPDEKFFFDAIIQLKESN 317
           QFEPDE FFFDAIIQLKESN
Sbjct: 195 QFEPDENFFFDAIIQLKESN 208

[Close]
BLAST of Clc06G01160 vs. ExPASy Swiss-Prot
Match: Q7NDP0 (Trigger factor OS=Gloeobacter violaceus (strain ATCC 29082 / PCC 7421) OX=251221 GN=tig PE=3 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 5.5e-05
Identity = 29/121 (23.97%), Postives = 64/121 (52.89%), Query Frame = 0 

Query: 193 ELKIRVEVSGAKTRAIFNNVFDKMVAEAQPIPGFRRVKGGNIQRHCFFFEIPRDILLEIL 252
           ++ + VEV G K++  +  +    +  A+ IPGFR  K             PR ++L+  
Sbjct: 12  QMGLNVEVEGEKSKQAYEKLVRDTMRTAR-IPGFRPGKA------------PRQLVLQFY 71

Query: 253 GPSKVYKQVIKEVINSTVAAYVEKEALKVGKDLRIEQSYEDLEDQFEPDEKFFFDAIIQL 312
           G  ++  Q ++ +I+S++   +E+E++    +L++  S+E+L  +++P E   F A + +
Sbjct: 72  GKERLRAQALENLIDSSLKEAIEQESIASLGNLQLRDSFEELLGRYQPGEPLSFKAAVDV 119

Query: 313 K 314
           +
Sbjct: 132 Q 119

[Close]
BLAST of Clc06G01160 vs. ExPASy TrEMBL
Match: A0A1S3CC05 (trigger factor-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103498958 PE=4 SV=1)

HSP 1 Score: 345.5 bits (885), Expect = 2.3e-91
Identity = 180/200 (90.00%), Postives = 187/200 (93.50%), Query Frame = 0 

Query: 117 QAIYHKQTSAYFTPNLTCTSVSFPSQIRYGHRKISLSKNNRYLPAACAVLSEDVSVSSSH 176
           +A+YHKQT+ YFTPNLTCTSVSFPSQI+YG  KISLSKNNRYLPAACAVLSE+ SVSSS 
Sbjct: 15  KAVYHKQTTDYFTPNLTCTSVSFPSQIKYGSSKISLSKNNRYLPAACAVLSENASVSSSQ 74

Query: 177 FEDFSVTNVTNTTENKELKIRVEVSGAKTRAIFNNVFDKMVAEAQPIPGFRRVKGGNIQR 236
           FEDFSVTNVTNTTENKELKIRVEVSG KTRAIFN VFD+MVAEAQPIPGFRRVKGGNIQR
Sbjct: 75  FEDFSVTNVTNTTENKELKIRVEVSGTKTRAIFNVVFDRMVAEAQPIPGFRRVKGGNIQR 134

Query: 237 HCFFFEIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKEALKVGKDLRIEQSYEDLED 296
                 IPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKEALKVGKDLRI+QSYEDLED
Sbjct: 135 KT--PNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKEALKVGKDLRIDQSYEDLED 194

Query: 297 QFEPDEKFFFDAIIQLKESN 317
           QFEPDEKFFFDAIIQLKESN
Sbjct: 195 QFEPDEKFFFDAIIQLKESN 212

[Close]
BLAST of Clc06G01160 vs. ExPASy TrEMBL
Match: A0A5A7TA41 (Trigger factor-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold122G002030 PE=4 SV=1)

HSP 1 Score: 344.7 bits (883), Expect = 4.0e-91
Identity = 181/201 (90.05%), Postives = 188/201 (93.53%), Query Frame = 0 

Query: 117 QAIYHKQTSAYFTPNLTCTSVSFPSQIRYGHRKISLSKNNRYLPAACAVLSEDVSVSSSH 176
           +A+YHKQT+ YFTPNLTCTSVSFPSQI+YG  KISLSKNNRYLPAACAVLSE+ SVSSS 
Sbjct: 15  KAVYHKQTTDYFTPNLTCTSVSFPSQIKYGSSKISLSKNNRYLPAACAVLSENASVSSSQ 74

Query: 177 FEDFSVTNVTNTTENKELKIRVEVSGAKTRAIFNNVFDKMVAEAQPIPGFRRVKGGNIQR 236
           FEDFSVTNVTNTTENKELKIRVEVSG KTRAIFN VFD+MVAEAQPIPGFRRVKGGNIQR
Sbjct: 75  FEDFSVTNVTNTTENKELKIRVEVSGTKTRAIFNVVFDRMVAEAQPIPGFRRVKGGNIQR 134

Query: 237 HCFFFEIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEK-EALKVGKDLRIEQSYEDLE 296
           H     IPRDILLEILGPSKVYKQVIKEVINSTVAAYVEK EALKVGKDLRI+QSYEDLE
Sbjct: 135 H-----IPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKQEALKVGKDLRIDQSYEDLE 194

Query: 297 DQFEPDEKFFFDAIIQLKESN 317
           DQFEPDEKFFFDAIIQLKESN
Sbjct: 195 DQFEPDEKFFFDAIIQLKESN 210

[Close]
BLAST of Clc06G01160 vs. ExPASy TrEMBL
Match: A0A1S3CBJ8 (trigger factor-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498958 PE=4 SV=1)

HSP 1 Score: 340.9 bits (873), Expect = 5.7e-90
Identity = 180/201 (89.55%), Postives = 187/201 (93.03%), Query Frame = 0 

Query: 117 QAIYHKQTSAYFTPNLTCTSVSFPSQIRYGHRKISLSKNNRYLPAACAVLSEDVSVSSSH 176
           +A+YHKQT+ YFTPNLTCTSVSFPSQI+YG  KISLSKNNRYLPAACAVLSE+ SVSSS 
Sbjct: 15  KAVYHKQTTDYFTPNLTCTSVSFPSQIKYGSSKISLSKNNRYLPAACAVLSENASVSSSQ 74

Query: 177 FEDFSVTNVTNTTENKELKIRVEVSGAKTRAIFNNVFDKMVAEAQPIPGFRRVKGGNIQR 236
           FEDFSVTNVTNTTENKELKIRVEVSG KTRAIFN VFD+MVAEAQPIPGFRRVKGGNIQR
Sbjct: 75  FEDFSVTNVTNTTENKELKIRVEVSGTKTRAIFNVVFDRMVAEAQPIPGFRRVKGGNIQR 134

Query: 237 HCFFFEIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEK-EALKVGKDLRIEQSYEDLE 296
                 IPRDILLEILGPSKVYKQVIKEVINSTVAAYVEK EALKVGKDLRI+QSYEDLE
Sbjct: 135 KT--PNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKQEALKVGKDLRIDQSYEDLE 194

Query: 297 DQFEPDEKFFFDAIIQLKESN 317
           DQFEPDEKFFFDAIIQLKESN
Sbjct: 195 DQFEPDEKFFFDAIIQLKESN 213

[Close]
BLAST of Clc06G01160 vs. ExPASy TrEMBL
Match: A0A1S3CB34 (trigger factor-like isoform X4 OS=Cucumis melo OX=3656 GN=LOC103498958 PE=4 SV=1)

HSP 1 Score: 337.4 bits (864), Expect = 6.3e-89
Identity = 176/200 (88.00%), Postives = 183/200 (91.50%), Query Frame = 0 

Query: 117 QAIYHKQTSAYFTPNLTCTSVSFPSQIRYGHRKISLSKNNRYLPAACAVLSEDVSVSSSH 176
           +A+YHKQT+ YFTPNLTCTSVSFPSQI+YG  KISLSKNNRYLPAACAVLSE+ SVSSS 
Sbjct: 15  KAVYHKQTTDYFTPNLTCTSVSFPSQIKYGSSKISLSKNNRYLPAACAVLSENASVSSSQ 74

Query: 177 FEDFSVTNVTNTTENKELKIRVEVSGAKTRAIFNNVFDKMVAEAQPIPGFRRVKGGNIQR 236
           FEDFSVTNVTNTTENKELKIRVEVSG KTRAIFN VFD+MVAEAQPIPGFRRVKGG    
Sbjct: 75  FEDFSVTNVTNTTENKELKIRVEVSGTKTRAIFNVVFDRMVAEAQPIPGFRRVKGGKTP- 134

Query: 237 HCFFFEIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKEALKVGKDLRIEQSYEDLED 296
                 IPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKEALKVGKDLRI+QSYEDLED
Sbjct: 135 -----NIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKEALKVGKDLRIDQSYEDLED 194

Query: 297 QFEPDEKFFFDAIIQLKESN 317
           QFEPDEKFFFDAIIQLKESN
Sbjct: 195 QFEPDEKFFFDAIIQLKESN 208

[Close]
BLAST of Clc06G01160 vs. ExPASy TrEMBL
Match: A0A0A0KBW0 (Trigger_N domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G086150 PE=4 SV=1)

HSP 1 Score: 336.3 bits (861), Expect = 1.4e-88
Identity = 177/200 (88.50%), Postives = 182/200 (91.00%), Query Frame = 0 

Query: 117 QAIYHKQTSAYFTPNLTCTSVSFPSQIRYGHRKISLSKNNRYLPAACAVLSEDVSVSSSH 176
           +AIYHKQT+ YFTPNLTC  VSFPSQIRYG RKISLSKNNRYLPAACAVLSE+VSVSSS 
Sbjct: 15  KAIYHKQTTDYFTPNLTCIGVSFPSQIRYGSRKISLSKNNRYLPAACAVLSENVSVSSSQ 74

Query: 177 FEDFSVTNVTNTTENKELKIRVEVSGAKTRAIFNNVFDKMVAEAQPIPGFRRVKGGNIQR 236
           FEDFSVTNVTNT ENKELKIRVEVSGAKTRAIFN VFD+MVAEAQPIPGFRRVKGG    
Sbjct: 75  FEDFSVTNVTNTKENKELKIRVEVSGAKTRAIFNVVFDRMVAEAQPIPGFRRVKGGKTP- 134

Query: 237 HCFFFEIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKEALKVGKDLRIEQSYEDLED 296
                 IPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKEALKVGKDLRI+QSYEDLED
Sbjct: 135 -----NIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKEALKVGKDLRIDQSYEDLED 194

Query: 297 QFEPDEKFFFDAIIQLKESN 317
           QFEPDE FFFDAIIQLKESN
Sbjct: 195 QFEPDENFFFDAIIQLKESN 208

[Close]
BLAST of Clc06G01160 vs. TAIR 10
Match: AT2G30695.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein folding, protein transport; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Trigger factor, ribosome-binding, bacterial (InterPro:IPR008881); Has 253 Blast hits to 253 proteins in 72 species: Archae - 0; Bacteria - 138; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink). )

HSP 1 Score: 162.9 bits (411), Expect = 4.1e-40
Identity = 93/169 (55.03%), Postives = 117/169 (69.23%), Query Frame = 0 

Query: 148 RKISLSKNNRYLPAACAVLSEDVSVSSSHFEDFSVTNVTNTTENKELKIRVEVSGAKTRA 207
           +K+     NR   A CA  S DV  SS   E   +T V   T N E+K+ V+VSG KT+ 
Sbjct: 40  QKLCTRATNRQFVAVCAAPS-DVETSSKD-ESVLITKVETETSN-EVKVHVQVSGEKTQT 99

Query: 208 IFNNVFDKMVAEAQPIPGFRRVKGGNIQRHCFFFEIPRDILLEILGPSKVYKQVIKEVIN 267
           +FN+VF+KMVA AQPIPGFRRVKGG          IP+D+LLEILG SKVYKQVIK++IN
Sbjct: 100 VFNHVFEKMVAAAQPIPGFRRVKGGKTP------NIPKDVLLEILGYSKVYKQVIKKLIN 159

Query: 268 STVAAYVEKEALKVGKDLRIEQSYEDLEDQFEPDEKFFFDAIIQLKESN 317
           S +  YV++E LKVGK+L + QSYEDLE+ FEP E F FDA I+L+E++
Sbjct: 160 SAIEDYVKQEDLKVGKELTVVQSYEDLEETFEPGESFSFDATIKLQEAS 199

[Close]
BLAST of Clc06G01160 vs. TAIR 10
Match: AT2G30695.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein folding, protein transport; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Trigger factor, ribosome-binding, bacterial (InterPro:IPR008881); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 162.9 bits (411), Expect = 4.1e-40
Identity = 93/169 (55.03%), Postives = 117/169 (69.23%), Query Frame = 0 

Query: 148 RKISLSKNNRYLPAACAVLSEDVSVSSSHFEDFSVTNVTNTTENKELKIRVEVSGAKTRA 207
           +K+     NR   A CA  S DV  SS   E   +T V   T N E+K+ V+VSG KT+ 
Sbjct: 40  QKLCTRATNRQFVAVCAAPS-DVETSSKD-ESVLITKVETETSN-EVKVHVQVSGEKTQT 99

Query: 208 IFNNVFDKMVAEAQPIPGFRRVKGGNIQRHCFFFEIPRDILLEILGPSKVYKQVIKEVIN 267
           +FN+VF+KMVA AQPIPGFRRVKGG          IP+D+LLEILG SKVYKQVIK++IN
Sbjct: 100 VFNHVFEKMVAAAQPIPGFRRVKGGKTP------NIPKDVLLEILGYSKVYKQVIKKLIN 159

Query: 268 STVAAYVEKEALKVGKDLRIEQSYEDLEDQFEPDEKFFFDAIIQLKESN 317
           S +  YV++E LKVGK+L + QSYEDLE+ FEP E F FDA I+L+E++
Sbjct: 160 SAIEDYVKQEDLKVGKELTVVQSYEDLEETFEPGESFSFDATIKLQEAS 199

The following BLAST results are available for this feature:
BLAST of Clc06G01160 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008460017.14.8e-9190.00PREDICTED: trigger factor-like isoform X2 [Cucumis melo][more]
KAA0039923.18.2e-9190.05trigger factor-like isoform X1 [Cucumis melo var. makuwa][more]
XP_008460016.11.2e-8989.55PREDICTED: trigger factor-like isoform X1 [Cucumis melo][more]
XP_008460019.11.3e-8888.00PREDICTED: trigger factor-like isoform X4 [Cucumis melo][more]
XP_004140596.12.9e-8888.50uncharacterized protein LOC101211587 isoform X2 [Cucumis sativus] >KGN46334.1 hy... [more]
BLAST of Clc06G01160 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q7NDP05.5e-0523.97Trigger factor OS=Gloeobacter violaceus (strain ATCC 29082 / PCC 7421) OX=251221... [more]
BLAST of Clc06G01160 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3CC052.3e-9190.00trigger factor-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103498958 PE=4 SV=1[more]
A0A5A7TA414.0e-9190.05Trigger factor-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... [more]
A0A1S3CBJ85.7e-9089.55trigger factor-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498958 PE=4 SV=1[more]
A0A1S3CB346.3e-8988.00trigger factor-like isoform X4 OS=Cucumis melo OX=3656 GN=LOC103498958 PE=4 SV=1[more]
A0A0A0KBW01.4e-8888.50Trigger_N domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G086150 P... [more]
BLAST of Clc06G01160 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G30695.14.1e-4055.03FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein folding, protein ... [more]
AT2G30695.24.1e-4055.03FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein folding, protein ... [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008881Trigger factor, ribosome-binding, bacterialPFAMPF05697Trigger_Ncoord: 186..309
e-value: 3.7E-7
score: 30.5
IPR036611Trigger factor ribosome-binding domain superfamilyGENE3D3.30.70.1050coord: 184..313
e-value: 1.2E-15
score: 59.8
IPR036611Trigger factor ribosome-binding domain superfamilySUPERFAMILY102735Trigger factor ribosome-binding domaincoord: 187..311
IPR005215Trigger factorPANTHERPTHR30560TRIGGER FACTOR CHAPERONE AND PEPTIDYL-PROLYL CIS/TRANS ISOMERASEcoord: 115..315
NoneNo IPR availablePANTHERPTHR30560:SF5OS09G0515400 PROTEINcoord: 115..315

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc06G01160.2Clc06G01160.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0061077 chaperone-mediated protein folding
biological_process GO:0051083 'de novo' cotranslational protein folding
biological_process GO:0000413 protein peptidyl-prolyl isomerization
biological_process GO:0015031 protein transport
biological_process GO:0043335 protein unfolding
biological_process GO:0006457 protein folding
molecular_function GO:0003755 peptidyl-prolyl cis-trans isomerase activity
molecular_function GO:0044183 protein folding chaperone
molecular_function GO:0043022 ribosome binding