Clc06G01070 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc06G01070
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	GRAS family transcription factor
Location	ClcChr06: 921489 .. 923844 (-)
RNA-Seq Expression	Clc06G01070
Synteny	Clc06G01070

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTTTAAATTGTATGGGAATGAGACATGCATTTAATCATAAGCCCAACTATTAAACAAAGCCTTTTTCTCAACCAAACTTTGTGCTTGCCTATATAAATATATACTATAATTTTTTTTTATTAAAAAAATATATATATAGTTATTTTTATTTTTATTTATTTATTTATTTATTATTTTTTGGGTTCAAAAGAATGCTCCTTCCTCCCTCAATCAAAATTGTCAAACACACCCTTTTTTCCTCCATAAGAAAGCATGGACATAACTTTTTTCACAGCCAAAGAAGCCCCCACAAGCTTCTTCAACCAAAGCCATGATCATCATCTTCATCATCTTCACTTCTCCAACTTAGACATGCAAAGCTCCACCAGCCATTCGTCGGAGTACTCACCGGAAAACTCTCCATCCGCTGCTGCTGCCGCCACCACAGCTGCTGCCACGGGAAAATGGGCCTCCACCCTTCTCAAGGAGTGTGCTAGAGCTATCTCTGAAAAGGACTCCAACAAAATCCACCATTTTCTTTGGATGTTGAACGAGCTGGCTTCCCCTTATGGTGACTCTGATCAAAAAATGGCTTCCTACTTCTTGCAAGCTCTCTTCTGCAGAGCCACAGAAACTGGCCTTAGCTGCTACAAAACCCTCGTCGCTGTCGCCGAGAAGAATCACAACTTTGACTCTGCCCTGAGGCTCATCCTCAAGTTTCAAGAGGTACGTGTTAAAATCACCACTAAACTCAAAAGCTTTAAATAATTAATTCTTGTTCAAATTTCTAGAATGAATTCACCCGGGTTATTATCAATATTTAAGAGCTTGATTAGCTACTTCTAAATCAATAGTTTGAACTATTAGGTTAATGTAAATTTATAACAGCATCCACTAATTTGTAAGCTTGATAATTAGCACGAGTCCTAACGAATGATTATCGAGTTCAATACAAGATCTCCTATTACTTTAAACAGTAAGTCACTTCTATTTCAGTGGATATTTTAACCTTTGAACTAATAAAGAAAGTACGATAATCTAACCGATGAGCTGATAAACTTCATTAAACTCAAAACTATAAGCTGAGTTGATTGGGTTGTGGTGAATTTAATTTTTTTTGTTCTAGGCAAGTCCATGGACAACATTCGGGCATGTGGCATCGAACGGTGCGATTCTCGAAGCGCTCGAGGGAGAAACGAAGCTCCACATCATCGACATAAGCAACACCCTTTGCACCCAATGGCCAACCCTACTAGAATCCCTAGCCACACGCAATGATGACACCCCACATCTAAAGCTAACAGTGGTGACAACAACAAGCATAGTGAAGTGTTTAATGAAGGAAATAGGGCAAAGAATGGAGAAATTTGCAAGGCTAATGGGAGTCCCCTTTGAATTCAACCCTATAACAAATCTCAACCACTTAACTGACCTCACAAATGAAGCCCTCAAAGTAGAAGAAGGTGAAGCCATTGCCATAAATTGCATTGGAGCCTTAAGAAGAGTGAGAGTTGAAGAAAGAAACAATGTGATTTCAATGTTGAAATCACTAAAGCCTAGAGTTTTAACAATTGTAGAGGAAGAAGCTGATTTCATAAGCTCCAAAAATGACTTTTTGAAGTGCTTTGAAGAGTGTCTTAGATTTTACACTCTCTACTTTGAGATGTTAGAAGAGAGCTTTGTGGCAACAAGCAATGAGAGATTGGTTTTGGAAAGAGAATGTTCAAGAAGCATTGTGAGGCTTTTGGGGTGTGATCAAGAAATTAGTGAAGAAGAAATGGGGAGTGAGAGAAGAGAAAAAGGAAAGCAATGGATAAAAAGGCTCAAACAAGCAACTTTTTCATCAGCTGATTTTAGTGAAGATGTAATGGATGATGTTAAGGCTTTGCTCAAGCGGTACAAACCCGGTTGGGCATTGTGGCGTCCAACCGCAGCCACTACCGGAGAAGAAGAAGAAGGTGGTGGTGGTGATGATTCAGGTGGAATTTACTTGACATGGAAGGAAGAACCAGTGGTGTGGGTTTCAGCATGGAAACCCTAATTAAAGGAACAAAATTCACATTATTTATATATTTATTATATATTATCATAATACCAATATTCATAAAGGAGTTTTTCTTTTTCTTTTTCTTTTTGTATGGGGTTAAGCCATGAAATTGTTATATATTTTGTGTAGATTTTGTATTCAAAATTTTATATTGTTCTTAATTTTCTTGAGGGAGTTTTTTTAATTTTGTGCTGTTGTTGCCTTTGTTTTTGCTTGGTTTTTTCTTTTTTCCATGGAGTTTGTGGATTTTTCCTGCCTCTCCCATTATTATTTTTACCCTCTTCTCTCTAAATTTTCCTTTAAAAGCAAAAACATTATTCCCAAA

mRNA sequence

ATGAATTTTAAATTGTATGGGAATGAGACATGCATTTAATCATAAGCCCAACTATTAAACAAAGCCTTTTTCTCAACCAAACTTTGTGCTTGCCTATATAAATATATACTATAATTTTTTTTTATTAAAAAAATATATATATAGTTATTTTTATTTTTATTTATTTATTTATTTATTATTTTTTGGGTTCAAAAGAATGCTCCTTCCTCCCTCAATCAAAATTGTCAAACACACCCTTTTTTCCTCCATAAGAAAGCATGGACATAACTTTTTTCACAGCCAAAGAAGCCCCCACAAGCTTCTTCAACCAAAGCCATGATCATCATCTTCATCATCTTCACTTCTCCAACTTAGACATGCAAAGCTCCACCAGCCATTCGTCGGAGTACTCACCGGAAAACTCTCCATCCGCTGCTGCTGCCGCCACCACAGCTGCTGCCACGGGAAAATGGGCCTCCACCCTTCTCAAGGAGTGTGCTAGAGCTATCTCTGAAAAGGACTCCAACAAAATCCACCATTTTCTTTGGATGTTGAACGAGCTGGCTTCCCCTTATGGTGACTCTGATCAAAAAATGGCTTCCTACTTCTTGCAAGCTCTCTTCTGCAGAGCCACAGAAACTGGCCTTAGCTGCTACAAAACCCTCGTCGCTGTCGCCGAGAAGAATCACAACTTTGACTCTGCCCTGAGGCTCATCCTCAAGTTTCAAGAGGCAAGTCCATGGACAACATTCGGGCATGTGGCATCGAACGGTGCGATTCTCGAAGCGCTCGAGGGAGAAACGAAGCTCCACATCATCGACATAAGCAACACCCTTTGCACCCAATGGCCAACCCTACTAGAATCCCTAGCCACACGCAATGATGACACCCCACATCTAAAGCTAACAGTGGTGACAACAACAAGCATAGTGAAGTGTTTAATGAAGGAAATAGGGCAAAGAATGGAGAAATTTGCAAGGCTAATGGGAGTCCCCTTTGAATTCAACCCTATAACAAATCTCAACCACTTAACTGACCTCACAAATGAAGCCCTCAAAGTAGAAGAAGGTGAAGCCATTGCCATAAATTGCATTGGAGCCTTAAGAAGAGTGAGAGTTGAAGAAAGAAACAATGTGATTTCAATGTTGAAATCACTAAAGCCTAGAGTTTTAACAATTGTAGAGGAAGAAGCTGATTTCATAAGCTCCAAAAATGACTTTTTGAAGTGCTTTGAAGAGTGTCTTAGATTTTACACTCTCTACTTTGAGATGTTAGAAGAGAGCTTTGTGGCAACAAGCAATGAGAGATTGGTTTTGGAAAGAGAATGTTCAAGAAGCATTGTGAGGCTTTTGGGGTGTGATCAAGAAATTAGTGAAGAAGAAATGGGGAGTGAGAGAAGAGAAAAAGGAAAGCAATGGATAAAAAGGCTCAAACAAGCAACTTTTTCATCAGCTGATTTTAGTGAAGATGTAATGGATGATGTTAAGGCTTTGCTCAAGCGGTACAAACCCGGTTGGGCATTGTGGCGTCCAACCGCAGCCACTACCGGAGAAGAAGAAGAAGGTGGTGGTGGTGATGATTCAGGTGGAATTTACTTGACATGGAAGGAAGAACCAGTGGTGTGGGTTTCAGCATGGAAACCCTAATTAAAGGAACAAAATTCACATTATTTATATATTTATTATATATTATCATAATACCAATATTCATAAAGGAGTTTTTCTTTTTCTTTTTCTTTTTGTATGGGGTTAAGCCATGAAATTGTTATATATTTTGTGTAGATTTTGTATTCAAAATTTTATATTGTTCTTAATTTTCTTGAGGGAGTTTTTTTAATTTTGTGCTGTTGTTGCCTTTGTTTTTGCTTGGTTTTTTCTTTTTTCCATGGAGTTTGTGGATTTTTCCTGCCTCTCCCATTATTATTTTTACCCTCTTCTCTCTAAATTTTCCTTTAAAAGCAAAAACATTATTCCCAAA

Coding sequence (CDS)

ATGGACATAACTTTTTTCACAGCCAAAGAAGCCCCCACAAGCTTCTTCAACCAAAGCCATGATCATCATCTTCATCATCTTCACTTCTCCAACTTAGACATGCAAAGCTCCACCAGCCATTCGTCGGAGTACTCACCGGAAAACTCTCCATCCGCTGCTGCTGCCGCCACCACAGCTGCTGCCACGGGAAAATGGGCCTCCACCCTTCTCAAGGAGTGTGCTAGAGCTATCTCTGAAAAGGACTCCAACAAAATCCACCATTTTCTTTGGATGTTGAACGAGCTGGCTTCCCCTTATGGTGACTCTGATCAAAAAATGGCTTCCTACTTCTTGCAAGCTCTCTTCTGCAGAGCCACAGAAACTGGCCTTAGCTGCTACAAAACCCTCGTCGCTGTCGCCGAGAAGAATCACAACTTTGACTCTGCCCTGAGGCTCATCCTCAAGTTTCAAGAGGCAAGTCCATGGACAACATTCGGGCATGTGGCATCGAACGGTGCGATTCTCGAAGCGCTCGAGGGAGAAACGAAGCTCCACATCATCGACATAAGCAACACCCTTTGCACCCAATGGCCAACCCTACTAGAATCCCTAGCCACACGCAATGATGACACCCCACATCTAAAGCTAACAGTGGTGACAACAACAAGCATAGTGAAGTGTTTAATGAAGGAAATAGGGCAAAGAATGGAGAAATTTGCAAGGCTAATGGGAGTCCCCTTTGAATTCAACCCTATAACAAATCTCAACCACTTAACTGACCTCACAAATGAAGCCCTCAAAGTAGAAGAAGGTGAAGCCATTGCCATAAATTGCATTGGAGCCTTAAGAAGAGTGAGAGTTGAAGAAAGAAACAATGTGATTTCAATGTTGAAATCACTAAAGCCTAGAGTTTTAACAATTGTAGAGGAAGAAGCTGATTTCATAAGCTCCAAAAATGACTTTTTGAAGTGCTTTGAAGAGTGTCTTAGATTTTACACTCTCTACTTTGAGATGTTAGAAGAGAGCTTTGTGGCAACAAGCAATGAGAGATTGGTTTTGGAAAGAGAATGTTCAAGAAGCATTGTGAGGCTTTTGGGGTGTGATCAAGAAATTAGTGAAGAAGAAATGGGGAGTGAGAGAAGAGAAAAAGGAAAGCAATGGATAAAAAGGCTCAAACAAGCAACTTTTTCATCAGCTGATTTTAGTGAAGATGTAATGGATGATGTTAAGGCTTTGCTCAAGCGGTACAAACCCGGTTGGGCATTGTGGCGTCCAACCGCAGCCACTACCGGAGAAGAAGAAGAAGGTGGTGGTGGTGATGATTCAGGTGGAATTTACTTGACATGGAAGGAAGAACCAGTGGTGTGGGTTTCAGCATGGAAACCCTAA

Protein sequence

MDITFFTAKEAPTSFFNQSHDHHLHHLHFSNLDMQSSTSHSSEYSPENSPSAAAAATTAAATGKWASTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFCRATETGLSCYKTLVAVAEKNHNFDSALRLILKFQEASPWTTFGHVASNGAILEALEGETKLHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTSIVKCLMKEIGQRMEKFARLMGVPFEFNPITNLNHLTDLTNEALKVEEGEAIAINCIGALRRVRVEERNNVISMLKSLKPRVLTIVEEEADFISSKNDFLKCFEECLRFYTLYFEMLEESFVATSNERLVLERECSRSIVRLLGCDQEISEEEMGSERREKGKQWIKRLKQATFSSADFSEDVMDDVKALLKRYKPGWALWRPTAATTGEEEEGGGGDDSGGIYLTWKEEPVVWVSAWKP

Homology

[Close]

BLAST of Clc06G01070 vs. NCBI nr
Match: XP_038906992.1 (protein SHORT-ROOT-like [Benincasa hispida])

HSP 1 Score: 854.0 bits (2205), Expect = 6.0e-244
Identity = 436/456 (95.61%), Postives = 442/456 (96.93%), Query Frame = 0


Query: 1   MDITFFTAKEAPTSFFNQSHDHHLHHLHFSNLDMQSSTSHSSEYSPENSPSAAAAATTAA 60
           MDITFFTAKEAPTSFFNQSHDHHLHHLHFSNLDMQSSTSHSSEYSPE+SPSAAA   TAA
Sbjct: 1   MDITFFTAKEAPTSFFNQSHDHHLHHLHFSNLDMQSSTSHSSEYSPEHSPSAAA---TAA 60

Query: 61  ATGKWASTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFCRATE 120
           ATGKWASTLLKECA+AISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFCRATE
Sbjct: 61  ATGKWASTLLKECAKAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFCRATE 120

Query: 121 TGLSCYKTLVAVAEKNHNFDSALRLILKFQEASPWTTFGHVASNGAILEALEGETKLHII 180
           TGL+CYKTLVAVAEKNHNFDSALRLILKFQEASPWTTFGHVASNGAILEALEGETKLHII
Sbjct: 121 TGLTCYKTLVAVAEKNHNFDSALRLILKFQEASPWTTFGHVASNGAILEALEGETKLHII 180

Query: 181 DISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTSIVKCLMKEIGQRMEKFARLMGVPF 240
           DISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTSIVKCLMKEIGQRMEKFARLMGVPF
Sbjct: 181 DISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTSIVKCLMKEIGQRMEKFARLMGVPF 240

Query: 241 EFNPITNLNHLTDLTNEALKVEEGEAIAINCIGALRRVRVEERNNVISMLKSLKPRVLTI 300
           EFNPITNLNHLTDLTNEALKVEEGEAIAINCIGALRRVRVEERNNVISMLKSLKPRVLTI
Sbjct: 241 EFNPITNLNHLTDLTNEALKVEEGEAIAINCIGALRRVRVEERNNVISMLKSLKPRVLTI 300

Query: 301 VEEEADFISSKNDFLKCFEECLRFYTLYFEMLEESFVATSNERLVLERECSRSIVRLLGC 360
           VEEEADFISSKNDFLKCFEECLRFYTLYFEMLEESFVATSNERLVLERECSRSIVRLLGC
Sbjct: 301 VEEEADFISSKNDFLKCFEECLRFYTLYFEMLEESFVATSNERLVLERECSRSIVRLLGC 360

Query: 361 D-QEISEEEMGSERREKGKQWIKRLKQATFSSADFSEDVMDDVKALLKRYKPGWALWRPT 420
           D  +ISEEEMGSERREKGKQW KRLKQA FSSADFSEDVMDDVKALLKRYKPGWAL R T
Sbjct: 361 DHDQISEEEMGSERREKGKQWTKRLKQALFSSADFSEDVMDDVKALLKRYKPGWALLRST 420

Query: 421 AATTGEEEEGGGGDDSGGIYLTWKEEPVVWVSAWKP 456
           AA TG+E+E  GGDDS GIYLTWKEE VVWVSAWKP
Sbjct: 421 AAVTGDEDE-SGGDDSSGIYLTWKEESVVWVSAWKP 452

[Close]

BLAST of Clc06G01070 vs. NCBI nr
Match: XP_004153213.1 (protein SHORT-ROOT [Cucumis sativus] >KGN46310.1 hypothetical protein Csa_005353 [Cucumis sativus])

HSP 1 Score: 836.6 bits (2160), Expect = 9.9e-239
Identity = 428/460 (93.04%), Postives = 438/460 (95.22%), Query Frame = 0


Query: 1   MDITFFTAKEAPTSFFNQSHD----HHLHHLHFSNLDMQSSTSHSSEYSPENSPSAAAAA 60
           MDITFFTAKEAPTSFFNQSHD    H LHHLHFSNLDMQSSTSHSSEYSPE+SPSAAAAA
Sbjct: 1   MDITFFTAKEAPTSFFNQSHDHRHHHQLHHLHFSNLDMQSSTSHSSEYSPEHSPSAAAAA 60

Query: 61  TTAAATGKWASTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFC 120
            TA ATGKWASTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMA YFLQALFC
Sbjct: 61  ATATATGKWASTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMAFYFLQALFC 120

Query: 121 RATETGLSCYKTLVAVAEKNHNFDSALRLILKFQEASPWTTFGHVASNGAILEALEGETK 180
           RATETGL+CYKTLVAVAEKNHNFDSALRLILKFQEASPWTTFGHVASNGAILEALEGETK
Sbjct: 121 RATETGLTCYKTLVAVAEKNHNFDSALRLILKFQEASPWTTFGHVASNGAILEALEGETK 180

Query: 181 LHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTSIVKCLMKEIGQRMEKFARLM 240
           LHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTSIVKCLMKEIGQRMEKFARLM
Sbjct: 181 LHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTSIVKCLMKEIGQRMEKFARLM 240

Query: 241 GVPFEFNPITNLNHLTDLTNEALKVEEGEAIAINCIGALRRVRVEERNNVISMLKSLKPR 300
           GVPFEFNPITN++HLTDLTNEALKVEEGEAIAINCIGALRRV+VEERNNVISMLKSLKPR
Sbjct: 241 GVPFEFNPITNIDHLTDLTNEALKVEEGEAIAINCIGALRRVKVEERNNVISMLKSLKPR 300

Query: 301 VLTIVEEEADFISSKNDFLKCFEECLRFYTLYFEMLEESFVATSNERLVLERECSRSIVR 360
           VLTIVEEEADFISSKNDFLKCFEECLRFYTLYFEMLEESFVATSNERLVLERECSRSIVR
Sbjct: 301 VLTIVEEEADFISSKNDFLKCFEECLRFYTLYFEMLEESFVATSNERLVLERECSRSIVR 360

Query: 361 LLGCD-QEISEEEMGSERREKGKQWIKRLKQATFSSADFSEDVMDDVKALLKRYKPGWAL 420
           LLGCD  +ISEEE+GSERREKGKQW KRLKQA FSSA+FSEDVMDDVKALLKRYKPGWAL
Sbjct: 361 LLGCDHDQISEEEIGSERREKGKQWTKRLKQALFSSANFSEDVMDDVKALLKRYKPGWAL 420

Query: 421 WRPTAATTGEEEEGGGGDDSGGIYLTWKEEPVVWVSAWKP 456
            RP  A   +EEE G G +S GIYLTWKEEPVVWVSAWKP
Sbjct: 421 LRPATAAVRDEEENGDG-ESSGIYLTWKEEPVVWVSAWKP 459

[Close]

BLAST of Clc06G01070 vs. NCBI nr
Match: XP_008460030.1 (PREDICTED: protein SHORT-ROOT-like [Cucumis melo])

HSP 1 Score: 832.4 bits (2149), Expect = 1.9e-237
Identity = 425/461 (92.19%), Postives = 433/461 (93.93%), Query Frame = 0


Query: 1   MDITFFTAKEAPTSFFNQSHD-----HHLHHLHFSNLDMQSSTSHSSEYSPENSPSAAAA 60
           MDITFFT KEAPTSFFNQSHD     HH HHLHFSNLDMQSSTSHSSEYSPE+SPSAAAA
Sbjct: 1   MDITFFTPKEAPTSFFNQSHDHRHHHHHHHHLHFSNLDMQSSTSHSSEYSPEHSPSAAAA 60

Query: 61  ATTAAATGKWASTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALF 120
           A TA ATGKWASTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALF
Sbjct: 61  AATATATGKWASTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALF 120

Query: 121 CRATETGLSCYKTLVAVAEKNHNFDSALRLILKFQEASPWTTFGHVASNGAILEALEGET 180
           CRATETGL+CYKTLVAVAEKNHNFDSALRLILKFQEASPWTTFGHVASNGAILEALEGET
Sbjct: 121 CRATETGLTCYKTLVAVAEKNHNFDSALRLILKFQEASPWTTFGHVASNGAILEALEGET 180

Query: 181 KLHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTSIVKCLMKEIGQRMEKFARL 240
           KLHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTSIVKCLMKEIGQRMEKFARL
Sbjct: 181 KLHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTSIVKCLMKEIGQRMEKFARL 240

Query: 241 MGVPFEFNPITNLNHLTDLTNEALKVEEGEAIAINCIGALRRVRVEERNNVISMLKSLKP 300
           MGVPFEFNPITN+NHLTDLTNEALKVEEGEAIAINCIGALRRV+VEERNNVISMLK LKP
Sbjct: 241 MGVPFEFNPITNINHLTDLTNEALKVEEGEAIAINCIGALRRVKVEERNNVISMLKLLKP 300

Query: 301 RVLTIVEEEADFISSKNDFLKCFEECLRFYTLYFEMLEESFVATSNERLVLERECSRSIV 360
           RVLTIVEEEADFISS NDFLKCFEECLRFYTLYFEMLEESF ATSNERLVLERECSRSIV
Sbjct: 301 RVLTIVEEEADFISSTNDFLKCFEECLRFYTLYFEMLEESFGATSNERLVLERECSRSIV 360

Query: 361 RLLGCD-QEISEEEMGSERREKGKQWIKRLKQATFSSADFSEDVMDDVKALLKRYKPGWA 420
           RLLGCD  +ISEEEMGSERREKGKQW KRLKQA FSSA+FSEDVMDDVKALLKRYKPGWA
Sbjct: 361 RLLGCDHDQISEEEMGSERREKGKQWTKRLKQALFSSANFSEDVMDDVKALLKRYKPGWA 420

Query: 421 LWRPTAATTGEEEEGGGGDDSGGIYLTWKEEPVVWVSAWKP 456
           L RP  A  G +EE  G  +  GIYLTWKEEPVVWVSAWKP
Sbjct: 421 LLRPATAAVGVDEEENGDAEPSGIYLTWKEEPVVWVSAWKP 461

[Close]

BLAST of Clc06G01070 vs. NCBI nr
Match: XP_022992254.1 (protein SHORT-ROOT-like [Cucurbita maxima])

HSP 1 Score: 794.7 bits (2051), Expect = 4.3e-226
Identity = 408/460 (88.70%), Postives = 430/460 (93.48%), Query Frame = 0


Query: 1   MDITFFTAKEAPTSFFNQSHDHHLHHLHFSNLDMQSSTSHSSEYSPENSPS--AAAAATT 60
           MDITFFTAKEAPT+FFNQSHDHH HHLHFSNLDMQSSTSHSSEYSPE SPS  AAAAA T
Sbjct: 1   MDITFFTAKEAPTTFFNQSHDHH-HHLHFSNLDMQSSTSHSSEYSPEQSPSAAAAAAAAT 60

Query: 61  AAATGKWASTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFCRA 120
            AATGKW+STLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFC+A
Sbjct: 61  LAATGKWSSTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFCKA 120

Query: 121 TETGLSCYKTLVAVAEKNHNFDSALRLILKFQEASPWTTFGHVASNGAILEALEGETKLH 180
           TETGL+CYKTLVA+A+KNH+FDS+L+LILKFQEASPWTTFGHVASNGAILEALEGETKLH
Sbjct: 121 TETGLTCYKTLVAIADKNHSFDSSLKLILKFQEASPWTTFGHVASNGAILEALEGETKLH 180

Query: 181 IIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTSIVKCLMKEIGQRMEKFARLMGV 240
           IIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTT+IVK LMKEIGQRMEKFARLMGV
Sbjct: 181 IIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTTIVKSLMKEIGQRMEKFARLMGV 240

Query: 241 PFEFNPITNLNHLTDLTNEALKVEEGEAIAINCIGALRRVRVEERNNVISMLKSLKPRVL 300
           PFEFNPITNL +LTDLT EALKVEE EAIAINCIGALRRVR+EERNNVISMLKSLKPRVL
Sbjct: 241 PFEFNPITNLENLTDLTKEALKVEEDEAIAINCIGALRRVRIEERNNVISMLKSLKPRVL 300

Query: 301 TIVEEEADFISSKNDFLKCFEECLRFYTLYFEMLEESFVATSNERLVLERECSRSIVRLL 360
           TIVEEEADFISSKN+FLKCFEECLRFYTLYF+MLE+SFV TSNERLVLERECSRSIVRLL
Sbjct: 301 TIVEEEADFISSKNNFLKCFEECLRFYTLYFDMLEDSFVTTSNERLVLERECSRSIVRLL 360

Query: 361 GCDQEISEEEMGSERREKGKQWIKRLKQATFSSADFSEDVMDDVKALLKRYKPGWALWR- 420
           GCD+  SEE+MGSERREKGKQW KRLK++ FS A+FSEDV+DDVKALLKRYKPGWAL R 
Sbjct: 361 GCDE--SEEQMGSERREKGKQWSKRLKESAFSLAEFSEDVLDDVKALLKRYKPGWALLRR 420

Query: 421 --PTAATTGEEEEGGGGDDSGGIYLTWKEEPVVWVSAWKP 456
              TA  TGE  E    DDS G+YLTWKEEPVVWVSAWKP
Sbjct: 421 AATTATATGEVHE--RDDDSCGVYLTWKEEPVVWVSAWKP 455

[Close]

BLAST of Clc06G01070 vs. NCBI nr
Match: XP_023548769.1 (protein SHORT-ROOT-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 794.3 bits (2050), Expect = 5.6e-226
Identity = 408/464 (87.93%), Postives = 432/464 (93.10%), Query Frame = 0


Query: 1   MDITFFTAKEAPTSFFNQSHDHHLHHLHFSNLDMQSSTSHSSEYSPENSPS--AAAAATT 60
           MDITFFTAKEAPT+FFNQSHDHH HHLHFSNLDMQSSTSHSSEYSPE SPS  AAAAATT
Sbjct: 1   MDITFFTAKEAPTTFFNQSHDHH-HHLHFSNLDMQSSTSHSSEYSPEQSPSAAAAAAATT 60

Query: 61  AAATGKWASTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFCRA 120
            AATGKW+STLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFC+A
Sbjct: 61  LAATGKWSSTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFCKA 120

Query: 121 TETGLSCYKTLVAVAEKNHNFDSALRLILKFQEASPWTTFGHVASNGAILEALEGETKLH 180
           TETGL+CYKTLVA+A+KNH+FD++L+LILKFQEASPWTTFGHVASNGAILEALEGETKLH
Sbjct: 121 TETGLTCYKTLVAIADKNHSFDTSLKLILKFQEASPWTTFGHVASNGAILEALEGETKLH 180

Query: 181 IIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTSIVKCLMKEIGQRMEKFARLMGV 240
           IIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTT+IVK LMKEIGQRMEKFARLMGV
Sbjct: 181 IIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTTIVKSLMKEIGQRMEKFARLMGV 240

Query: 241 PFEFNPITNLNHLTDLTNEALKVEEGEAIAINCIGALRRVRVEERNNVISMLKSLKPRVL 300
           PF+FNPITNL +LTDLT EALKVEE EAIAINCIGALRRVR+EERNNVISMLKSLKPRVL
Sbjct: 241 PFDFNPITNLENLTDLTKEALKVEEDEAIAINCIGALRRVRIEERNNVISMLKSLKPRVL 300

Query: 301 TIVEEEADFISSKNDFLKCFEECLRFYTLYFEMLEESFVATSNERLVLERECSRSIVRLL 360
           TIVEEEADFISSKN+FLKCFEECLRFYTLYF+MLE+SFV TSNERLVLERECSRSIVRLL
Sbjct: 301 TIVEEEADFISSKNNFLKCFEECLRFYTLYFDMLEDSFVTTSNERLVLERECSRSIVRLL 360

Query: 361 GCDQEISEEEMGSERREKGKQWIKRLKQATFSSADFSEDVMDDVKALLKRYKPGWALWR- 420
           GCD+  SEE+MGSERREKGKQW KRLK++ FS A+FSEDV+DDVKALLKRYKPGWAL R 
Sbjct: 361 GCDE--SEEQMGSERREKGKQWSKRLKESAFSLAEFSEDVLDDVKALLKRYKPGWALLRR 420

Query: 421 ------PTAATTGEEEEGGGGDDSGGIYLTWKEEPVVWVSAWKP 456
                  TAA TGE  E    DDS G+YLTWKEEPVVWVSAWKP
Sbjct: 421 ATITTTTTAAATGEVHE--RDDDSCGVYLTWKEEPVVWVSAWKP 459

[Close]

BLAST of Clc06G01070 vs. ExPASy Swiss-Prot
Match: Q9SZF7 (Protein SHORT-ROOT OS=Arabidopsis thaliana OX=3702 GN=SHR PE=1 SV=1)

HSP 1 Score: 395.2 bits (1014), Expect = 1.0e-108
Identity = 221/484 (45.66%), Postives = 302/484 (62.40%), Query Frame = 0


Query: 17  NQSHDHHLHHLHFSNLDMQSSTSHSSEYSPENS--PSAAAAATTAA-------------- 76
           + S  HH HH H +     S  +  ++Y P  S  PS+ AAA   A              
Sbjct: 65  SSSSSHHNHHNHNNPNTYYSPFTTPTQYHPATSSTPSSTAAAAALASPYSSSGHHNDPSA 124

Query: 77  -------------ATGKWASTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMA 136
                        A  KWA ++L E ARA S+KD+ +    LW LNEL+SPYGD++QK+A
Sbjct: 125 FSIPQTPPSFDFSANAKWADSVLLEAARAFSDKDTARAQQILWTLNELSSPYGDTEQKLA 184

Query: 137 SYFLQALFCRATETGLSCYKTLV--AVAEKNHNFDSALRLILKFQEASPWTTFGHVASNG 196
           SYFLQALF R T +G  CY+T+V  A  EK  +F+S  + +LKFQE SPW TFGHVA+NG
Sbjct: 185 SYFLQALFNRMTGSGERCYRTMVTAAATEKTCSFESTRKTVLKFQEVSPWATFGHVAANG 244

Query: 197 AILEALEGETKLHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTT-------SIV 256
           AILEA++GE K+HI+DIS+T CTQWPTLLE+LATR+DDTPHL+LT V          +  
Sbjct: 245 AILEAVDGEAKIHIVDISSTFCTQWPTLLEALATRSDDTPHLRLTTVVVANKFVNDQTAS 304

Query: 257 KCLMKEIGQRMEKFARLMGVPFEFNPITNLNHLTDLTNEALKVEEGEAIAINCIGALRRV 316
             +MKEIG RMEKFARLMGVPF+FN I ++  L++     L V+  E +AINC+GA+  +
Sbjct: 305 HRMMKEIGNRMEKFARLMGVPFKFNIIHHVGDLSEFDLNELDVKPDEVLAINCVGAMHGI 364

Query: 317 --RVEERNNVISMLKSLKPRVLTIVEEEADFISSK-----NDFLKCFEECLRFYTLYFEM 376
             R   R+ VIS  + L+PR++T+VEEEAD +  +     ++FL+ F ECLR++ + FE 
Sbjct: 365 ASRGSPRDAVISSFRRLRPRIVTVVEEEADLVGEEEGGFDDEFLRGFGECLRWFRVCFES 424

Query: 377 LEESFVATSNERLVLERECSRSIVRLLGCDQEISEEEMGSERREKGKQWIKRLKQATFSS 436
            EESF  TSNERL+LER   R+IV L+ C+   S     +ERRE  ++W +R++ + F +
Sbjct: 425 WEESFPRTSNERLMLERAAGRAIVDLVACEPSDS-----TERRETARKWSRRMRNSGFGA 484

Query: 437 ADFSEDVMDDVKALLKRYKPGWALWRPTAATTGEEEEGGGGDDSGGIYLTWKEEPVVWVS 456
             +S++V DDV+ALL+RYK G  +W                 D+ GI+L W+++PVVW S
Sbjct: 485 VGYSDEVADDVRALLRRYKEG--VWSMVQC-----------PDAAGIFLCWRDQPVVWAS 530

[Close]

BLAST of Clc06G01070 vs. ExPASy Swiss-Prot
Match: A2XIA8 (Protein SHORT-ROOT 2 OS=Oryza sativa subsp. indica OX=39946 GN=SHR2 PE=3 SV=1)

HSP 1 Score: 391.7 bits (1005), Expect = 1.1e-107
Identity = 218/447 (48.77%), Postives = 285/447 (63.76%), Query Frame = 0


Query: 46  PENSPSAAAAATTAAATGKWASTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQK 105
           P +S + A A    +++G+WA+ LL ECARA++ +DS ++   +WMLNELASPYGD DQK
Sbjct: 168 PSSSGAGAGAGAAPSSSGRWAAQLLMECARAVAGRDSQRVQQLMWMLNELASPYGDVDQK 227

Query: 106 MASYFLQALFCRATETGLSCYKTLVAVAEKNHNFDSALRLILKFQEASPWTTFGHVASNG 165
           +ASYFLQ LF R T +G    +TL   +++N +FDS  R  LKFQE SPWT FGHVA+NG
Sbjct: 228 LASYFLQGLFARLTTSGPRTLRTLATASDRNASFDSTRRTALKFQELSPWTPFGHVAANG 287

Query: 166 AILEA-LEG------------------ETKLHIIDISNTLCTQWPTLLESLATR-NDDTP 225
           AILE+ LE                    T+LHI+D+SNT CTQWPTLLE+LATR +DDTP
Sbjct: 288 AILESFLEAAAAGAAAASSSSSSSSTPPTRLHILDLSNTFCTQWPTLLEALATRSSDDTP 347

Query: 226 HLKLTVVTTT----SIVKCLMKEIGQRMEKFARLMGVPFEFNPITNLNHLTDLTNEALKV 285
           HL +T V  T    +  + +M+EIGQR+EKFARLMGVPF F  + +   L DL   AL +
Sbjct: 348 HLSITTVVPTAAPSAAAQRVMREIGQRLEKFARLMGVPFSFRAVHHAGDLADLDLAALDL 407

Query: 286 EEG---EAIAINCIGALRRVRVEERNNVISMLKSLKPRVLTIVEEEADFISSKND----- 345
            EG    A+A+NC+ ALR V    R+  ++ L+ L+PRV+T+VEEEAD  + + D     
Sbjct: 408 REGGATAALAVNCVNALRGV-ARGRDAFVASLRRLEPRVVTVVEEEADLAAPEADASSEA 467

Query: 346 -----FLKCFEECLRFYTLYFEMLEESFVATSNERLVLERECSRSIVRLLGCDQEISEEE 405
                F+K F E LRF++ Y + LEESF  TSNERL LER   R+IV L+ C    S   
Sbjct: 468 DTDAAFVKVFGEGLRFFSAYMDSLEESFPKTSNERLSLERAVGRAIVDLVSCPASQS--- 527

Query: 406 MGSERREKGKQWIKRLKQATFSSADFSEDVMDDVKALLKRYKPGWALWRPTAATTGEEEE 456
             +ERRE    W +R++ A FS A FSEDV DDV++LL+RYK GW++     AT     +
Sbjct: 528 --AERRETAASWARRMRSAGFSPAAFSEDVADDVRSLLRRYKEGWSMRDAGGAT-----D 587

[Close]

BLAST of Clc06G01070 vs. ExPASy Swiss-Prot
Match: Q75I13 (Protein SHORT-ROOT 2 OS=Oryza sativa subsp. japonica OX=39947 GN=SHR2 PE=1 SV=1)

HSP 1 Score: 391.3 bits (1004), Expect = 1.4e-107
Identity = 218/447 (48.77%), Postives = 285/447 (63.76%), Query Frame = 0


Query: 46  PENSPSAAAAATTAAATGKWASTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQK 105
           P +S + A A    +++G+WA+ LL ECARA++ +DS ++   +WMLNELASPYGD DQK
Sbjct: 168 PSSSGAGAGAGAAPSSSGRWAAQLLMECARAVAGRDSQRVQQLMWMLNELASPYGDVDQK 227

Query: 106 MASYFLQALFCRATETGLSCYKTLVAVAEKNHNFDSALRLILKFQEASPWTTFGHVASNG 165
           +ASYFLQ LF R T +G    +TL   +++N +FDS  R  LKFQE SPWT FGHVA+NG
Sbjct: 228 LASYFLQGLFARLTTSGPRTLRTLATASDRNASFDSTRRTALKFQELSPWTPFGHVAANG 287

Query: 166 AILEA-LEG------------------ETKLHIIDISNTLCTQWPTLLESLATR-NDDTP 225
           AILE+ LE                    T+LHI+D+SNT CTQWPTLLE+LATR +DDTP
Sbjct: 288 AILESFLEAAAAGAAASSSSSSSSSTPPTRLHILDLSNTFCTQWPTLLEALATRSSDDTP 347

Query: 226 HLKLTVVTTT----SIVKCLMKEIGQRMEKFARLMGVPFEFNPITNLNHLTDLTNEALKV 285
           HL +T V  T    +  + +M+EIGQR+EKFARLMGVPF F  + +   L DL   AL +
Sbjct: 348 HLSITTVVPTAAPSAAAQRVMREIGQRLEKFARLMGVPFSFRAVHHSGDLADLDLAALDL 407

Query: 286 EEG---EAIAINCIGALRRVRVEERNNVISMLKSLKPRVLTIVEEEADFISSKND----- 345
            EG    A+A+NC+ ALR V    R+  ++ L+ L+PRV+T+VEEEAD  + + D     
Sbjct: 408 REGGATAALAVNCVNALRGV-ARGRDAFVASLRRLEPRVVTVVEEEADLAAPEADASSEA 467

Query: 346 -----FLKCFEECLRFYTLYFEMLEESFVATSNERLVLERECSRSIVRLLGCDQEISEEE 405
                F+K F E LRF++ Y + LEESF  TSNERL LER   R+IV L+ C    S   
Sbjct: 468 DTDAAFVKVFGEGLRFFSAYMDSLEESFPKTSNERLSLERAVGRAIVDLVSCPASQS--- 527

Query: 406 MGSERREKGKQWIKRLKQATFSSADFSEDVMDDVKALLKRYKPGWALWRPTAATTGEEEE 456
             +ERRE    W +R++ A FS A FSEDV DDV++LL+RYK GW++     AT     +
Sbjct: 528 --AERRETAASWARRMRSAGFSPAAFSEDVADDVRSLLRRYKEGWSMRDAGGAT-----D 587

[Close]

BLAST of Clc06G01070 vs. ExPASy Swiss-Prot
Match: A2YN56 (Protein SHORT-ROOT 1 OS=Oryza sativa subsp. indica OX=39946 GN=SHR1 PE=3 SV=1)

HSP 1 Score: 382.1 bits (980), Expect = 8.8e-105
Identity = 217/460 (47.17%), Postives = 290/460 (63.04%), Query Frame = 0


Query: 31  NLDMQSSTSHSSEYSPENSPSAAAAATTAAATGKWASTLLKECARAISEKDSNKIHHFLW 90
           NLD  S  S S         +A++ A      G+WAS LL ECAR+++ +DS ++   +W
Sbjct: 163 NLDFSSPASSS------GGGTASSGAVGGGGGGRWASQLLLECARSVAARDSQRVQQLMW 222

Query: 91  MLNELASPYGDSDQKMASYFLQALFCRATETGLSCYKTLVAVAEKNHNFDSALRLILKFQ 150
           MLNELASPYGD +QK+ASYFLQ LF R T +G    +TL A +++N +FDS  R  L+FQ
Sbjct: 223 MLNELASPYGDVEQKLASYFLQGLFARLTASGQRTLRTLAAASDRNTSFDSTRRTALRFQ 282

Query: 151 EASPWTTFGHVASNGAILE-------ALEGET-KLHIIDISNTLCTQWPTLLESLATRN- 210
           E SPW++FGHVA+NGAILE       A   ET + HI+D+SNT CTQWPTLLE+LATR+ 
Sbjct: 283 ELSPWSSFGHVAANGAILESFLEVAAAASSETQRFHILDLSNTFCTQWPTLLEALATRSA 342

Query: 211 DDTPHLKLTVVTT------TSIVKCLMKEIGQRMEKFARLMGVPFEFNPITNLNHLTDLT 270
           D+TPHL +T V +      T+ V+ +M+EIGQRMEKFARLMGVPF F  + +   L +L 
Sbjct: 343 DETPHLSITTVVSAAPSAPTAAVQRVMREIGQRMEKFARLMGVPFRFRAVHHSGDLAELD 402

Query: 271 NEALKVEEG---EAIAINCIGALRRV---RVEERNNVISMLKSLKPRVLTIVEEEADFIS 330
            +AL + EG    A+A+NC+ +LR V   R   R+   + L+ L PRV+T+VEEEAD ++
Sbjct: 403 LDALDLREGGATTALAVNCVNSLRGVVPGRARRRDAFAASLRRLDPRVVTVVEEEADLVA 462

Query: 331 SKND--------------FLKCFEECLRFYTLYFEMLEESFVATSNERLVLERECSRSIV 390
           S  D              FLK F E LRF++ Y + LEESF  TSNERL LER   R+IV
Sbjct: 463 SDPDASSATEEGGDTEAAFLKVFGEGLRFFSAYMDSLEESFPKTSNERLALERGAGRAIV 522

Query: 391 RLLGCDQEISEEEMGSERREKGKQWIKRLKQATFSSADFSEDVMDDVKALLKRYKPGWAL 450
            L+ C    + E M  ERRE    W +R++ A FS   FSEDV DDV++LL+RY+ GW++
Sbjct: 523 DLVSCP---ASESM--ERRETAASWARRMRSAGFSPVAFSEDVADDVRSLLRRYREGWSM 582

Query: 451 WRPTAATTGEEEEGGGGDDSGGIYLTWKEEPVVWVSAWKP 456
                   G ++   G     G++L WKE+P+VW SAW+P
Sbjct: 583 -----REAGTDDSAAG----AGVFLAWKEQPLVWASAWRP 602

[Close]

BLAST of Clc06G01070 vs. ExPASy Swiss-Prot
Match: Q8H2X8 (Protein SHORT-ROOT 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SHR1 PE=1 SV=2)

HSP 1 Score: 381.7 bits (979), Expect = 1.1e-104
Identity = 217/460 (47.17%), Postives = 290/460 (63.04%), Query Frame = 0


Query: 31  NLDMQSSTSHSSEYSPENSPSAAAAATTAAATGKWASTLLKECARAISEKDSNKIHHFLW 90
           NLD  S  S S         +A++ A      G+WAS LL ECAR+++ +DS ++   +W
Sbjct: 163 NLDFSSPASSS------GGGTASSGAVGGGGGGRWASQLLLECARSVAARDSQRVQQLMW 222

Query: 91  MLNELASPYGDSDQKMASYFLQALFCRATETGLSCYKTLVAVAEKNHNFDSALRLILKFQ 150
           MLNELASPYGD +QK+ASYFLQ LF R T +G    +TL A +++N +FDS  R  L+FQ
Sbjct: 223 MLNELASPYGDVEQKLASYFLQGLFARLTASGPRTLRTLAAASDRNTSFDSTRRTALRFQ 282

Query: 151 EASPWTTFGHVASNGAILE-------ALEGET-KLHIIDISNTLCTQWPTLLESLATRN- 210
           E SPW++FGHVA+NGAILE       A   ET + HI+D+SNT CTQWPTLLE+LATR+ 
Sbjct: 283 ELSPWSSFGHVAANGAILESFLEVAAAASSETQRFHILDLSNTFCTQWPTLLEALATRSA 342

Query: 211 DDTPHLKLTVVTT------TSIVKCLMKEIGQRMEKFARLMGVPFEFNPITNLNHLTDLT 270
           D+TPHL +T V +      T+ V+ +M+EIGQRMEKFARLMGVPF F  + +   L +L 
Sbjct: 343 DETPHLSITTVVSAAPSAPTAAVQRVMREIGQRMEKFARLMGVPFRFRAVHHSGDLAELD 402

Query: 271 NEALKVEEG---EAIAINCIGALRRV---RVEERNNVISMLKSLKPRVLTIVEEEADFIS 330
            +AL + EG    A+A+NC+ +LR V   R   R+   + L+ L PRV+T+VEEEAD ++
Sbjct: 403 LDALDLREGGATTALAVNCVNSLRGVVPGRARRRDAFAASLRRLDPRVVTVVEEEADLVA 462

Query: 331 SKND--------------FLKCFEECLRFYTLYFEMLEESFVATSNERLVLERECSRSIV 390
           S  D              FLK F E LRF++ Y + LEESF  TSNERL LER   R+IV
Sbjct: 463 SDPDASSATEEGGDTEAAFLKVFGEGLRFFSAYMDSLEESFPKTSNERLALERGAGRAIV 522

Query: 391 RLLGCDQEISEEEMGSERREKGKQWIKRLKQATFSSADFSEDVMDDVKALLKRYKPGWAL 450
            L+ C    + E M  ERRE    W +R++ A FS   FSEDV DDV++LL+RY+ GW++
Sbjct: 523 DLVSCP---ASESM--ERRETAASWARRMRSAGFSPVAFSEDVADDVRSLLRRYREGWSM 582

Query: 451 WRPTAATTGEEEEGGGGDDSGGIYLTWKEEPVVWVSAWKP 456
                   G ++   G     G++L WKE+P+VW SAW+P
Sbjct: 583 -----REAGTDDSAAG----AGVFLAWKEQPLVWASAWRP 602

[Close]

BLAST of Clc06G01070 vs. ExPASy TrEMBL
Match: A0A0A0K966 (GRAS domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G081510 PE=3 SV=1)

HSP 1 Score: 836.6 bits (2160), Expect = 4.8e-239
Identity = 428/460 (93.04%), Postives = 438/460 (95.22%), Query Frame = 0


Query: 1   MDITFFTAKEAPTSFFNQSHD----HHLHHLHFSNLDMQSSTSHSSEYSPENSPSAAAAA 60
           MDITFFTAKEAPTSFFNQSHD    H LHHLHFSNLDMQSSTSHSSEYSPE+SPSAAAAA
Sbjct: 1   MDITFFTAKEAPTSFFNQSHDHRHHHQLHHLHFSNLDMQSSTSHSSEYSPEHSPSAAAAA 60

Query: 61  TTAAATGKWASTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFC 120
            TA ATGKWASTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMA YFLQALFC
Sbjct: 61  ATATATGKWASTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMAFYFLQALFC 120

Query: 121 RATETGLSCYKTLVAVAEKNHNFDSALRLILKFQEASPWTTFGHVASNGAILEALEGETK 180
           RATETGL+CYKTLVAVAEKNHNFDSALRLILKFQEASPWTTFGHVASNGAILEALEGETK
Sbjct: 121 RATETGLTCYKTLVAVAEKNHNFDSALRLILKFQEASPWTTFGHVASNGAILEALEGETK 180

Query: 181 LHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTSIVKCLMKEIGQRMEKFARLM 240
           LHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTSIVKCLMKEIGQRMEKFARLM
Sbjct: 181 LHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTSIVKCLMKEIGQRMEKFARLM 240

Query: 241 GVPFEFNPITNLNHLTDLTNEALKVEEGEAIAINCIGALRRVRVEERNNVISMLKSLKPR 300
           GVPFEFNPITN++HLTDLTNEALKVEEGEAIAINCIGALRRV+VEERNNVISMLKSLKPR
Sbjct: 241 GVPFEFNPITNIDHLTDLTNEALKVEEGEAIAINCIGALRRVKVEERNNVISMLKSLKPR 300

Query: 301 VLTIVEEEADFISSKNDFLKCFEECLRFYTLYFEMLEESFVATSNERLVLERECSRSIVR 360
           VLTIVEEEADFISSKNDFLKCFEECLRFYTLYFEMLEESFVATSNERLVLERECSRSIVR
Sbjct: 301 VLTIVEEEADFISSKNDFLKCFEECLRFYTLYFEMLEESFVATSNERLVLERECSRSIVR 360

Query: 361 LLGCD-QEISEEEMGSERREKGKQWIKRLKQATFSSADFSEDVMDDVKALLKRYKPGWAL 420
           LLGCD  +ISEEE+GSERREKGKQW KRLKQA FSSA+FSEDVMDDVKALLKRYKPGWAL
Sbjct: 361 LLGCDHDQISEEEIGSERREKGKQWTKRLKQALFSSANFSEDVMDDVKALLKRYKPGWAL 420

Query: 421 WRPTAATTGEEEEGGGGDDSGGIYLTWKEEPVVWVSAWKP 456
            RP  A   +EEE G G +S GIYLTWKEEPVVWVSAWKP
Sbjct: 421 LRPATAAVRDEEENGDG-ESSGIYLTWKEEPVVWVSAWKP 459

[Close]

BLAST of Clc06G01070 vs. ExPASy TrEMBL
Match: A0A1S3CCT8 (protein SHORT-ROOT-like OS=Cucumis melo OX=3656 GN=LOC103498966 PE=3 SV=1)

HSP 1 Score: 832.4 bits (2149), Expect = 9.0e-238
Identity = 425/461 (92.19%), Postives = 433/461 (93.93%), Query Frame = 0


Query: 1   MDITFFTAKEAPTSFFNQSHD-----HHLHHLHFSNLDMQSSTSHSSEYSPENSPSAAAA 60
           MDITFFT KEAPTSFFNQSHD     HH HHLHFSNLDMQSSTSHSSEYSPE+SPSAAAA
Sbjct: 1   MDITFFTPKEAPTSFFNQSHDHRHHHHHHHHLHFSNLDMQSSTSHSSEYSPEHSPSAAAA 60

Query: 61  ATTAAATGKWASTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALF 120
           A TA ATGKWASTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALF
Sbjct: 61  AATATATGKWASTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALF 120

Query: 121 CRATETGLSCYKTLVAVAEKNHNFDSALRLILKFQEASPWTTFGHVASNGAILEALEGET 180
           CRATETGL+CYKTLVAVAEKNHNFDSALRLILKFQEASPWTTFGHVASNGAILEALEGET
Sbjct: 121 CRATETGLTCYKTLVAVAEKNHNFDSALRLILKFQEASPWTTFGHVASNGAILEALEGET 180

Query: 181 KLHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTSIVKCLMKEIGQRMEKFARL 240
           KLHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTSIVKCLMKEIGQRMEKFARL
Sbjct: 181 KLHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTSIVKCLMKEIGQRMEKFARL 240

Query: 241 MGVPFEFNPITNLNHLTDLTNEALKVEEGEAIAINCIGALRRVRVEERNNVISMLKSLKP 300
           MGVPFEFNPITN+NHLTDLTNEALKVEEGEAIAINCIGALRRV+VEERNNVISMLK LKP
Sbjct: 241 MGVPFEFNPITNINHLTDLTNEALKVEEGEAIAINCIGALRRVKVEERNNVISMLKLLKP 300

Query: 301 RVLTIVEEEADFISSKNDFLKCFEECLRFYTLYFEMLEESFVATSNERLVLERECSRSIV 360
           RVLTIVEEEADFISS NDFLKCFEECLRFYTLYFEMLEESF ATSNERLVLERECSRSIV
Sbjct: 301 RVLTIVEEEADFISSTNDFLKCFEECLRFYTLYFEMLEESFGATSNERLVLERECSRSIV 360

Query: 361 RLLGCD-QEISEEEMGSERREKGKQWIKRLKQATFSSADFSEDVMDDVKALLKRYKPGWA 420
           RLLGCD  +ISEEEMGSERREKGKQW KRLKQA FSSA+FSEDVMDDVKALLKRYKPGWA
Sbjct: 361 RLLGCDHDQISEEEMGSERREKGKQWTKRLKQALFSSANFSEDVMDDVKALLKRYKPGWA 420

Query: 421 LWRPTAATTGEEEEGGGGDDSGGIYLTWKEEPVVWVSAWKP 456
           L RP  A  G +EE  G  +  GIYLTWKEEPVVWVSAWKP
Sbjct: 421 LLRPATAAVGVDEEENGDAEPSGIYLTWKEEPVVWVSAWKP 461

[Close]

BLAST of Clc06G01070 vs. ExPASy TrEMBL
Match: A0A6J1JX21 (protein SHORT-ROOT-like OS=Cucurbita maxima OX=3661 GN=LOC111488628 PE=3 SV=1)

HSP 1 Score: 794.7 bits (2051), Expect = 2.1e-226
Identity = 408/460 (88.70%), Postives = 430/460 (93.48%), Query Frame = 0


Query: 1   MDITFFTAKEAPTSFFNQSHDHHLHHLHFSNLDMQSSTSHSSEYSPENSPS--AAAAATT 60
           MDITFFTAKEAPT+FFNQSHDHH HHLHFSNLDMQSSTSHSSEYSPE SPS  AAAAA T
Sbjct: 1   MDITFFTAKEAPTTFFNQSHDHH-HHLHFSNLDMQSSTSHSSEYSPEQSPSAAAAAAAAT 60

Query: 61  AAATGKWASTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFCRA 120
            AATGKW+STLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFC+A
Sbjct: 61  LAATGKWSSTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFCKA 120

Query: 121 TETGLSCYKTLVAVAEKNHNFDSALRLILKFQEASPWTTFGHVASNGAILEALEGETKLH 180
           TETGL+CYKTLVA+A+KNH+FDS+L+LILKFQEASPWTTFGHVASNGAILEALEGETKLH
Sbjct: 121 TETGLTCYKTLVAIADKNHSFDSSLKLILKFQEASPWTTFGHVASNGAILEALEGETKLH 180

Query: 181 IIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTSIVKCLMKEIGQRMEKFARLMGV 240
           IIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTT+IVK LMKEIGQRMEKFARLMGV
Sbjct: 181 IIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTTIVKSLMKEIGQRMEKFARLMGV 240

Query: 241 PFEFNPITNLNHLTDLTNEALKVEEGEAIAINCIGALRRVRVEERNNVISMLKSLKPRVL 300
           PFEFNPITNL +LTDLT EALKVEE EAIAINCIGALRRVR+EERNNVISMLKSLKPRVL
Sbjct: 241 PFEFNPITNLENLTDLTKEALKVEEDEAIAINCIGALRRVRIEERNNVISMLKSLKPRVL 300

Query: 301 TIVEEEADFISSKNDFLKCFEECLRFYTLYFEMLEESFVATSNERLVLERECSRSIVRLL 360
           TIVEEEADFISSKN+FLKCFEECLRFYTLYF+MLE+SFV TSNERLVLERECSRSIVRLL
Sbjct: 301 TIVEEEADFISSKNNFLKCFEECLRFYTLYFDMLEDSFVTTSNERLVLERECSRSIVRLL 360

Query: 361 GCDQEISEEEMGSERREKGKQWIKRLKQATFSSADFSEDVMDDVKALLKRYKPGWALWR- 420
           GCD+  SEE+MGSERREKGKQW KRLK++ FS A+FSEDV+DDVKALLKRYKPGWAL R 
Sbjct: 361 GCDE--SEEQMGSERREKGKQWSKRLKESAFSLAEFSEDVLDDVKALLKRYKPGWALLRR 420

Query: 421 --PTAATTGEEEEGGGGDDSGGIYLTWKEEPVVWVSAWKP 456
              TA  TGE  E    DDS G+YLTWKEEPVVWVSAWKP
Sbjct: 421 AATTATATGEVHE--RDDDSCGVYLTWKEEPVVWVSAWKP 455

[Close]

BLAST of Clc06G01070 vs. ExPASy TrEMBL
Match: A0A6J1EZH2 (protein SHORT-ROOT-like OS=Cucurbita moschata OX=3662 GN=LOC111440607 PE=3 SV=1)

HSP 1 Score: 792.7 bits (2046), Expect = 7.9e-226
Identity = 405/456 (88.82%), Postives = 429/456 (94.08%), Query Frame = 0


Query: 1   MDITFFTAKEAPTSFFNQSHDHHLHHLHFSNLDMQSSTSHSSEYSPENSPS-AAAAATTA 60
           MDITFFTAKEAPT+FFNQSHDHH HHLHFSNLDMQSSTSHSSEYSPE SPS AAAAA T 
Sbjct: 1   MDITFFTAKEAPTTFFNQSHDHH-HHLHFSNLDMQSSTSHSSEYSPEQSPSAAAAAAATL 60

Query: 61  AATGKWASTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFCRAT 120
           AATGKW+STLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFC+AT
Sbjct: 61  AATGKWSSTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFCKAT 120

Query: 121 ETGLSCYKTLVAVAEKNHNFDSALRLILKFQEASPWTTFGHVASNGAILEALEGETKLHI 180
           ETGL+CYKTLVA+A+KNH+FDS+L+LILKFQEASPWTTFGHVASNGAILEALEGETKLHI
Sbjct: 121 ETGLTCYKTLVAIADKNHSFDSSLKLILKFQEASPWTTFGHVASNGAILEALEGETKLHI 180

Query: 181 IDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTSIVKCLMKEIGQRMEKFARLMGVP 240
           IDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTT+IVK LMKEIGQRMEKFARLMGVP
Sbjct: 181 IDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTTIVKSLMKEIGQRMEKFARLMGVP 240

Query: 241 FEFNPITNLNHLTDLTNEALKVEEGEAIAINCIGALRRVRVEERNNVISMLKSLKPRVLT 300
           FEFNPITNL +LTDLT EALKVEE EAIAINCIGALRRVR+EERNNV+SMLKSLKPRVLT
Sbjct: 241 FEFNPITNLENLTDLTKEALKVEEDEAIAINCIGALRRVRIEERNNVVSMLKSLKPRVLT 300

Query: 301 IVEEEADFISSKNDFLKCFEECLRFYTLYFEMLEESFVATSNERLVLERECSRSIVRLLG 360
           IVEEEADFISSKN+FLKCFEECLRFYTLYF+MLEESFV TSNERLVLERECSRSIVRLLG
Sbjct: 301 IVEEEADFISSKNNFLKCFEECLRFYTLYFDMLEESFVTTSNERLVLERECSRSIVRLLG 360

Query: 361 CDQEISEEEMGSERREKGKQWIKRLKQATFSSADFSEDVMDDVKALLKRYKPGWALWRPT 420
           CD+  SEE+MGSE+REKGKQW KRLK++ FS A+FSEDV+DDVKALLKRYKPGWAL R  
Sbjct: 361 CDE--SEEQMGSEKREKGKQWSKRLKESAFSLAEFSEDVLDDVKALLKRYKPGWALLR-R 420

Query: 421 AATTGEEEEGGGGDDSGGIYLTWKEEPVVWVSAWKP 456
           AATT   +     DDS G+YLTWKEEPVVWVSAWKP
Sbjct: 421 AATTATGKVHERDDDSCGVYLTWKEEPVVWVSAWKP 452

[Close]

BLAST of Clc06G01070 vs. ExPASy TrEMBL
Match: A0A5A7T902 (Protein SHORT-ROOT-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G001130 PE=3 SV=1)

HSP 1 Score: 775.0 bits (2000), Expect = 1.7e-220
Identity = 394/423 (93.14%), Postives = 402/423 (95.04%), Query Frame = 0


Query: 34  MQSSTSHSSEYSPENSPSAAAAATTAAATGKWASTLLKECARAISEKDSNKIHHFLWMLN 93
           MQSSTSHSSEYSPE+SPSAAAAA TA ATGKWASTLLKECARAISEKDSNKIHHFLWMLN
Sbjct: 1   MQSSTSHSSEYSPEHSPSAAAAAATATATGKWASTLLKECARAISEKDSNKIHHFLWMLN 60

Query: 94  ELASPYGDSDQKMASYFLQALFCRATETGLSCYKTLVAVAEKNHNFDSALRLILKFQEAS 153
           ELASPYGDSDQKMASYFLQALFCRATETGL+CYKTLVAVAEKNHNFDSALRLILKFQEAS
Sbjct: 61  ELASPYGDSDQKMASYFLQALFCRATETGLTCYKTLVAVAEKNHNFDSALRLILKFQEAS 120

Query: 154 PWTTFGHVASNGAILEALEGETKLHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVT 213
           PWTTFGHVASNGAILEALEGETKLHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVT
Sbjct: 121 PWTTFGHVASNGAILEALEGETKLHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVT 180

Query: 214 TTSIVKCLMKEIGQRMEKFARLMGVPFEFNPITNLNHLTDLTNEALKVEEGEAIAINCIG 273
           TTSIVKCLMKEIGQRMEKFARLMGVPFEFNPITN+NHLTDLTNEALKVEEGEAIAINCIG
Sbjct: 181 TTSIVKCLMKEIGQRMEKFARLMGVPFEFNPITNINHLTDLTNEALKVEEGEAIAINCIG 240

Query: 274 ALRRVRVEERNNVISMLKSLKPRVLTIVEEEADFISSKNDFLKCFEECLRFYTLYFEMLE 333
           ALRRV+VEERNNVISMLK LKPRVLTIVEEEADFISS NDFLKCFEECLRFYTLYFEMLE
Sbjct: 241 ALRRVKVEERNNVISMLKLLKPRVLTIVEEEADFISSTNDFLKCFEECLRFYTLYFEMLE 300

Query: 334 ESFVATSNERLVLERECSRSIVRLLGCD-QEISEEEMGSERREKGKQWIKRLKQATFSSA 393
           ESF ATSNERLVLERECSRSIVRLLGCD  +ISEEEMGSERREKGKQW KRLKQA FSSA
Sbjct: 301 ESFGATSNERLVLERECSRSIVRLLGCDHDQISEEEMGSERREKGKQWTKRLKQALFSSA 360

Query: 394 DFSEDVMDDVKALLKRYKPGWALWRPTAATTGEEEEGGGGDDSGGIYLTWKEEPVVWVSA 453
           +FSEDVMDDVKALLKRYKPGWAL RP  A  G +EE  G  +  GIYLTWKEEPVVWVSA
Sbjct: 361 NFSEDVMDDVKALLKRYKPGWALLRPATAAVGVDEEENGDAEPSGIYLTWKEEPVVWVSA 420

Query: 454 WKP 456
           WKP
Sbjct: 421 WKP 423

[Close]

BLAST of Clc06G01070 vs. TAIR 10
Match: AT4G37650.1 (GRAS family transcription factor )

HSP 1 Score: 395.2 bits (1014), Expect = 7.1e-110
Identity = 221/484 (45.66%), Postives = 302/484 (62.40%), Query Frame = 0


Query: 17  NQSHDHHLHHLHFSNLDMQSSTSHSSEYSPENS--PSAAAAATTAA-------------- 76
           + S  HH HH H +     S  +  ++Y P  S  PS+ AAA   A              
Sbjct: 65  SSSSSHHNHHNHNNPNTYYSPFTTPTQYHPATSSTPSSTAAAAALASPYSSSGHHNDPSA 124

Query: 77  -------------ATGKWASTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMA 136
                        A  KWA ++L E ARA S+KD+ +    LW LNEL+SPYGD++QK+A
Sbjct: 125 FSIPQTPPSFDFSANAKWADSVLLEAARAFSDKDTARAQQILWTLNELSSPYGDTEQKLA 184

Query: 137 SYFLQALFCRATETGLSCYKTLV--AVAEKNHNFDSALRLILKFQEASPWTTFGHVASNG 196
           SYFLQALF R T +G  CY+T+V  A  EK  +F+S  + +LKFQE SPW TFGHVA+NG
Sbjct: 185 SYFLQALFNRMTGSGERCYRTMVTAAATEKTCSFESTRKTVLKFQEVSPWATFGHVAANG 244

Query: 197 AILEALEGETKLHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTT-------SIV 256
           AILEA++GE K+HI+DIS+T CTQWPTLLE+LATR+DDTPHL+LT V          +  
Sbjct: 245 AILEAVDGEAKIHIVDISSTFCTQWPTLLEALATRSDDTPHLRLTTVVVANKFVNDQTAS 304

Query: 257 KCLMKEIGQRMEKFARLMGVPFEFNPITNLNHLTDLTNEALKVEEGEAIAINCIGALRRV 316
             +MKEIG RMEKFARLMGVPF+FN I ++  L++     L V+  E +AINC+GA+  +
Sbjct: 305 HRMMKEIGNRMEKFARLMGVPFKFNIIHHVGDLSEFDLNELDVKPDEVLAINCVGAMHGI 364

Query: 317 --RVEERNNVISMLKSLKPRVLTIVEEEADFISSK-----NDFLKCFEECLRFYTLYFEM 376
             R   R+ VIS  + L+PR++T+VEEEAD +  +     ++FL+ F ECLR++ + FE 
Sbjct: 365 ASRGSPRDAVISSFRRLRPRIVTVVEEEADLVGEEEGGFDDEFLRGFGECLRWFRVCFES 424

Query: 377 LEESFVATSNERLVLERECSRSIVRLLGCDQEISEEEMGSERREKGKQWIKRLKQATFSS 436
            EESF  TSNERL+LER   R+IV L+ C+   S     +ERRE  ++W +R++ + F +
Sbjct: 425 WEESFPRTSNERLMLERAAGRAIVDLVACEPSDS-----TERRETARKWSRRMRNSGFGA 484

Query: 437 ADFSEDVMDDVKALLKRYKPGWALWRPTAATTGEEEEGGGGDDSGGIYLTWKEEPVVWVS 456
             +S++V DDV+ALL+RYK G  +W                 D+ GI+L W+++PVVW S
Sbjct: 485 VGYSDEVADDVRALLRRYKEG--VWSMVQC-----------PDAAGIFLCWRDQPVVWAS 530

[Close]

BLAST of Clc06G01070 vs. TAIR 10
Match: AT3G49950.1 (GRAS family transcription factor )

HSP 1 Score: 181.0 bits (458), Expect = 2.1e-45
Identity = 128/407 (31.45%), Postives = 205/407 (50.37%), Query Frame = 0


Query: 69  LLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFCRATE--TGLSCY 128
           LL  CA AI   D+   H  LW+LN +A P GDS Q++ S FL+AL  RA      LS  
Sbjct: 30  LLLHCATAIDSNDAALTHQILWVLNNIAPPDGDSTQRLTSAFLRALLSRAVSKTPTLSST 89

Query: 129 KTLVAVAEKNHNFDSALRLILKFQEASPWTTFGHVASNGAILEALEGETKLHIIDISNTL 188
            + +  A++ H F  ++  +  F + +PW  FG +A+N AIL A+EG + +HI+D+S T 
Sbjct: 90  ISFLPQADELHRF--SVVELAAFVDLTPWHRFGFIAANAAILTAVEGYSTVHIVDLSLTH 149

Query: 189 CTQWPTLLESLATR-NDDTPHLKLTVVTTTS----IVKCLMKEIGQRMEKFARLMGVPFE 248
           C Q PTL++++A+R N   P LKLTVV+++      +    +E+G ++  FA    +  E
Sbjct: 150 CMQIPTLIDAMASRLNKPPPLLKLTVVSSSDHFPPFINISYEELGSKLVNFATTRNITME 209

Query: 249 FN--PITNLNHLTDLTNEALKV---EEGEAIAINCIGALRRVRVEE--------RNNVIS 308
           F   P T  +  + L  + L++      EA+ +NC   LR +  E         R   + 
Sbjct: 210 FTIVPSTYSDGFSSLLQQ-LRIYPSSFNEALVVNCHMMLRYIPEEPLTSSSSSLRTVFLK 269

Query: 309 MLKSLKPRVLTIVEEEADFISSKNDFLKCFEECLRFYTLYFEMLEESFVATSNERLVLER 368
            L+SL PR++T++EE+ D  S   + +   +    ++ + F+  +      S +R   E 
Sbjct: 270 QLRSLNPRIVTLIEEDVDLTS--ENLVNRLKSAFNYFWIPFDTTD---TFMSEQRRWYEA 329

Query: 369 ECSRSIVRLLGCDQEISEEEMGSERREKGKQWIKRLKQATFSSADFSEDVMDDVKALLKR 428
           E S  I  ++       E     ER E  ++WI+R+++A F      ED + DVKA+L+ 
Sbjct: 330 EISWKIENVVA-----KEGAERVERTETKRRWIERMREAEFGGVRVKEDAVADVKAMLEE 389

Query: 429 YKPGWALWRPTAATTGEEEEGGGGDDSGGIYLTWKEEPVVWVSAWKP 456
           +  GW          G ++E    DD   + LTWK   VV+ + W P
Sbjct: 390 HAVGW----------GMKKE----DDDESLVLTWKGHSVVFATVWVP 409

[Close]

BLAST of Clc06G01070 vs. TAIR 10
Match: AT2G04890.1 (SCARECROW-like 21 )

HSP 1 Score: 172.2 bits (435), Expect = 9.8e-43
Identity = 116/396 (29.29%), Postives = 202/396 (51.01%), Query Frame = 0


Query: 69  LLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFCRATETGLSCYKT 128
           +L  CA+A+SE +       +  L  + S  G+  Q++ +Y L+ L  R   +G S YK+
Sbjct: 53  VLVACAKAVSENNLLMARWCMGELRGMVSISGEPIQRLGAYMLEGLVARLAASGSSIYKS 112

Query: 129 LVAVAEKNHNFDSALRLILKFQEASPWTTFGHVASNGAILEALEGETKLHIIDISNTLCT 188
           L +   +++ F   L  +    E  P+  FG++++NGAI EA++ E ++HIID      +
Sbjct: 113 LQSREPESYEF---LSYVYVLHEVCPYFKFGYMSANGAIAEAMKDEERIHIIDFQIGQGS 172

Query: 189 QWPTLLESLATRNDDTPHLKLTVVTTTSIVKCLMKEIGQRMEKFARLMGVPFEFNPITNL 248
           QW  L+++ A R    P++++T V   S++  + K    R+EK A+   VPF FN ++  
Sbjct: 173 QWIALIQAFAARPGGAPNIRITGVGDGSVLVTVKK----RLEKLAKKFDVPFRFNAVSRP 232

Query: 249 NHLTDLTNEALKVEEGEAIAINCIGALRRVRVE------ERNNVISMLKSLKPRVLTIVE 308
           +   ++ N  L V +GEA+ +N    L  +  E       R+ ++ M+KSL P+V+T+VE
Sbjct: 233 SCEVEVEN--LDVRDGEALGVNFAYMLHHLPDESVSMENHRDRLLRMVKSLSPKVVTLVE 292

Query: 309 EEADFISSKNDFLKCFEECLRFYTLYFEMLEESFVATSNERLVLEREC-SRSIVRLLGCD 368
           +E +  ++ + FL  F E L +YT  FE ++        ER+ +E+ C +R +V ++ C+
Sbjct: 293 QECN--TNTSPFLPRFLETLSYYTAMFESIDVMLPRNHKERINIEQHCMARDVVNIIACE 352

Query: 369 QEISEEEMGSERREKGK---QWIKRLKQATFSSADFSEDVMDDVKALLKRYKPGWALWRP 428
                   G+ER E+ +   +W  R   A F     S  +   ++ALL+ Y  G+A+   
Sbjct: 353 --------GAERIERHELLGKWKSRFSMAGFEPYPLSSIISATIRALLRDYSNGYAI--- 412

Query: 429 TAATTGEEEEGGGGDDSGGIYLTWKEEPVVWVSAWK 455
                 EE +       G +YL W +  +V   AWK
Sbjct: 413 ------EERD-------GALYLGWMDRILVSSCAWK 413

[Close]

BLAST of Clc06G01070 vs. TAIR 10
Match: AT1G50600.1 (scarecrow-like 5 )

HSP 1 Score: 162.2 bits (409), Expect = 1.0e-39
Identity = 118/396 (29.80%), Postives = 193/396 (48.74%), Query Frame = 0


Query: 69  LLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFCRATETGLSCYKT 128
           +L ECA+A+   D       +  L ++ S  G+  Q++ +Y L+ L  R   +G S YK 
Sbjct: 230 VLYECAKAVENYDLEMTDWLISQLQQMVSVSGEPVQRLGAYMLEGLVARLASSGSSIYKA 289

Query: 129 LVAVAEKNHNFDSALRLILKFQEASPWTTFGHVASNGAILEALEGETKLHIIDISNTLCT 188
           L     K+      L  +    EA P+  FG+ ++NGAI EA++ E+ +HIID   +   
Sbjct: 290 LRC---KDPTGPELLTYMHILYEACPYFKFGYESANGAIAEAVKNESFVHIIDFQISQGG 349

Query: 189 QWPTLLESLATRNDDTPHLKLTVV---TTTSIVKCLMKEIGQRMEKFARLMGVPFEFNPI 248
           QW +L+ +L  R    P++++T +    ++   +  ++ +GQR+ K A + GVPFEF+  
Sbjct: 350 QWVSLIRALGARPGGPPNVRITGIDDPRSSFARQGGLELVGQRLGKLAEMCGVPFEFHGA 409

Query: 249 TNLNHLTDLTNEALKVEEGEAIAINCIGALRR-----VRVE-ERNNVISMLKSLKPRVLT 308
                 T++  E L V  GEA+A+N    L       V VE  R+ ++ ++K L P V+T
Sbjct: 410 ALC--CTEVEIEKLGVRNGEALAVNFPLVLHHMPDESVTVENHRDRLLRLVKHLSPNVVT 469

Query: 309 IVEEEADFISSKNDFLKCFEECLRFYTLYFEMLEESFVATSNERLVLEREC-SRSIVRLL 368
           +VE+EA+  ++   FL  F E +  Y   FE ++        ER+ +E+ C +R +V L+
Sbjct: 470 LVEQEAN--TNTAPFLPRFVETMNHYLAVFESIDVKLARDHKERINVEQHCLAREVVNLI 529

Query: 369 GCDQEISEEEMGSERREKGKQWIKRLKQATFSSADFSEDVMDDVKALLKRYKPGWALWRP 428
            C+    E     ER E   +W  R   A F     S  V   +K LL+ Y   + L   
Sbjct: 530 ACEGVERE-----ERHEPLGKWRSRFHMAGFKPYPLSSYVNATIKGLLESYSEKYTL--- 589

Query: 429 TAATTGEEEEGGGGDDSGGIYLTWKEEPVVWVSAWK 455
                 EE +       G +YL WK +P++   AW+
Sbjct: 590 ------EERD-------GALYLGWKNQPLITSCAWR 597

[Close]

BLAST of Clc06G01070 vs. TAIR 10
Match: AT5G48150.1 (GRAS family transcription factor )

HSP 1 Score: 158.3 bits (399), Expect = 1.5e-38
Identity = 117/420 (27.86%), Postives = 198/420 (47.14%), Query Frame = 0


Query: 56  ATTAAATGKWASTL-----------LKECARAISEKDSNKIHHFLWMLNELASPYGDSDQ 115
           +T +     W STL           L  CA+A+SE D    H  +  L ++ S  G+  Q
Sbjct: 98  STASQEINGWRSTLEAISRRDLRADLVSCAKAMSENDLMMAHSMMEKLRQMVSVSGEPIQ 157

Query: 116 KMASYFLQALFCRATETGLSCYKTLVAVAEKNHNFDSALRLILKFQEASPWTTFGHVASN 175
           ++ +Y L+ L  +   +G S YK L    E        L  +    E  P+  FG++++N
Sbjct: 158 RLGAYLLEGLVAQLASSGSSIYKALNRCPEPAST--ELLSYMHILYEVCPYFKFGYMSAN 217

Query: 176 GAILEALEGETKLHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTSIVKCL--- 235
           GAI EA++ E ++HIID      +QW TL+++ A R    P +++T +   +        
Sbjct: 218 GAIAEAMKEENRVHIIDFQIGQGSQWVTLIQAFAARPGGPPRIRITGIDDMTSAYARGGG 277

Query: 236 MKEIGQRMEKFARLMGVPFEFNPITNLNHLTDLTNEALKVEEGEAIAINCIGALRRVRVE 295
           +  +G R+ K A+   VPFEFN ++    ++++  + L V  GEA+A+N    L  +  E
Sbjct: 278 LSIVGNRLAKLAKQFNVPFEFNSVS--VSVSEVKPKNLGVRPGEALAVNFAFVLHHMPDE 337

Query: 296 ------ERNNVISMLKSLKPRVLTIVEEEADFISSKNDFLKCFEECLRFYTLYFEMLEES 355
                  R+ ++ M+KSL P+V+T+VE+E++  ++   F   F E + +Y   FE ++ +
Sbjct: 338 SVSTENHRDRLLRMVKSLSPKVVTLVEQESN--TNTAAFFPRFMETMNYYAAMFESIDVT 397

Query: 356 FVATSNERLVLEREC-SRSIVRLLGCDQEISEEEMGSERREKGKQWIKRLKQATFSSADF 415
                 +R+ +E+ C +R +V ++ C     E     ER E   +W  R   A F+    
Sbjct: 398 LPRDHKQRINVEQHCLARDVVNIIAC-----EGADRVERHELLGKWRSRFGMAGFTPYPL 457

Query: 416 SEDVMDDVKALLKRYKPGWALWRPTAATTGEEEEGGGGDDSGGIYLTWKEEPVVWVSAWK 455
           S  V   +K+LL+ Y   + L         EE +       G +YL W    +V   AWK
Sbjct: 458 SPLVNSTIKSLLRNYSDKYRL---------EERD-------GALYLGWMHRDLVASCAWK 490

The following BLAST results are available for this feature:

BLAST of Clc06G01070 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038906992.1	6.0e-244	95.61	protein SHORT-ROOT-like [Benincasa hispida]	[more]
XP_004153213.1	9.9e-239	93.04	protein SHORT-ROOT [Cucumis sativus] >KGN46310.1 hypothetical protein Csa_005353...	[more]
XP_008460030.1	1.9e-237	92.19	PREDICTED: protein SHORT-ROOT-like [Cucumis melo]	[more]
XP_022992254.1	4.3e-226	88.70	protein SHORT-ROOT-like [Cucurbita maxima]	[more]
XP_023548769.1	5.6e-226	87.93	protein SHORT-ROOT-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Clc06G01070 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SZF7	1.0e-108	45.66	Protein SHORT-ROOT OS=Arabidopsis thaliana OX=3702 GN=SHR PE=1 SV=1	[more]
A2XIA8	1.1e-107	48.77	Protein SHORT-ROOT 2 OS=Oryza sativa subsp. indica OX=39946 GN=SHR2 PE=3 SV=1	[more]
Q75I13	1.4e-107	48.77	Protein SHORT-ROOT 2 OS=Oryza sativa subsp. japonica OX=39947 GN=SHR2 PE=1 SV=1	[more]
A2YN56	8.8e-105	47.17	Protein SHORT-ROOT 1 OS=Oryza sativa subsp. indica OX=39946 GN=SHR1 PE=3 SV=1	[more]
Q8H2X8	1.1e-104	47.17	Protein SHORT-ROOT 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SHR1 PE=1 SV=2	[more]

BLAST of Clc06G01070 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K966	4.8e-239	93.04	GRAS domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G081510 PE=3 S...	[more]
A0A1S3CCT8	9.0e-238	92.19	protein SHORT-ROOT-like OS=Cucumis melo OX=3656 GN=LOC103498966 PE=3 SV=1	[more]
A0A6J1JX21	2.1e-226	88.70	protein SHORT-ROOT-like OS=Cucurbita maxima OX=3661 GN=LOC111488628 PE=3 SV=1	[more]
A0A6J1EZH2	7.9e-226	88.82	protein SHORT-ROOT-like OS=Cucurbita moschata OX=3662 GN=LOC111440607 PE=3 SV=1	[more]
A0A5A7T902	1.7e-220	93.14	Protein SHORT-ROOT-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Clc06G01070 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G37650.1	7.1e-110	45.66	GRAS family transcription factor	[more]
AT3G49950.1	2.1e-45	31.45	GRAS family transcription factor	[more]
AT2G04890.1	9.8e-43	29.29	SCARECROW-like 21	[more]
AT1G50600.1	1.0e-39	29.80	scarecrow-like 5	[more]
AT5G48150.1	1.5e-38	27.86	GRAS family transcription factor	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005202	Transcription factor GRAS	PFAM	PF03514	GRAS	coord: 68..454 e-value: 3.1E-95 score: 319.3
IPR005202	Transcription factor GRAS	PANTHER	PTHR31636	OSJNBA0084A10.13 PROTEIN-RELATED	coord: 32..454
IPR005202	Transcription factor GRAS	PROSITE	PS50985	GRAS	coord: 57..454 score: 67.835175
None	No IPR available	PANTHER	PTHR31636:SF194	PROTEIN SHORT-ROOT-LIKE	coord: 32..454

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc06G01070.1	Clc06G01070.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0043565	sequence-specific DNA binding