Clc06G01060 (gene) Watermelon (cordophanus) v2

Overview
NameClc06G01060
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description60S ribosomal protein L38
LocationClcChr06: 910030 .. 915379 (-)
RNA-Seq ExpressionClc06G01060
SyntenyClc06G01060
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTCCCGAGCGAGAAGCGAGACTTGAGCGAGAGCACGAGAGCCGAGACAGCGAAACCGGCGAGAGAGCAATACCACGAGGCTGCGGCGACACTGGGCGCGGGGAAAGCGTGAGTCGAGCGGGAGAGCGAGAGAGCGAGAGCGCGAGAGAGCGGGAGCTAGCGAGAGATACCACGAGAGTGACTGTGCGATTGGGCGCGGGAGACCGTGAGGCGAGGGAAGAAAGTGAGAGCGGGAGAGCGAGACAGCTAGCGAGAGTTGAATGCCGACAGCGACACTCAAGGCGAAACCCGCGACACCCGACGCGTGAAACCTCCGGAGAGTCACGGAAACTGAAGGAGAGCGAGAGAGAGAGGTGTCGGGCAGAGGGAGGCTGGCGGCGACGGCGGCGGCGAAAGGGAAAGGGAAAGGAGAGAGATGCGGCGGAGAGAGAGAGAGAATTTTTTTTTTTCTTTTCTCTTTTTCTTTTTGACTGCACGGGAAACGAGGTAATCCCTCTCCCTCCTTAAACCCTAATTTTCCCAATTTTACTTTTAACCAATTAAGGTAAAAATAATATCCTTTATTCCACCAAAATATTTATTTTATTCTATTTGCCCTAAAATAGAATAAGAATAAATTATTCTTTACCAAAAATCTAACATTTTCCTTAATTCCACCTTTAATTCTCTAACCACCATAAATACAAATTTTTTTGCAACTTTCCTATTTAACTTAAGTAAATACAATAATGCATATGAATAATTAAAATTCCCTTTTTATGCAAAATAACTTAATTTAATTGATTAGGGAAATTTACCTCAAGGGTTCGGGGTCGTTACAGAAAGCCTAGATAACATTCGATCCTTCAAGATGATATCTCATGTTTCTTCAATATGGTATTAGAGCCTACAAAGTCTAAAAGGGTATTCGATCTAAAAAAAAAAATTGAATCTTACCTAAGAATGGTGAAAATCCTACATTAAGAAAATGGAGGAGCCTCACAATCTTTAAAACATGTTCATTGGTTTTAAAATGAAAATTGAGATAAATATTTTAAATAAAAAAAGAAATAAATGTCTATTAATTAGGTGAGATAAACATTAATAAAAACAAAATGGTATGAAAATAAATCTCAAATCTAAAATTGAATTTTTTTCAAATACTTGGCTATTTGTGGAAATAGGATCCCAAACACCCTATTTGATTACGATTTGATAACATTCGTAATGAACACATGCAATGAACGTGAAAAATGTGGAGATTTTTATATTTGAAGTTTTAAGATAATATTTTATCGTCTAAAGAAAAAATTTAGTACAAATATATAATATAACATATACAAATGTTTTATTTTCTAAAACTATAATGTAATAAGTAAAATAAAAACAAACTCATGAGCCAAATTATCTATGTTATAACTATAAGCATCCTTCTTCAAATGTATCCAAAGATATCAATAAAGAAATAAAATAGTACATATAAAAGTAATTTTATTTTATTTGTCCCTCTAAGCTGTTTTTTTCTCATTTAATTTTCTTATTTTTTCTAGTCTTTTTGTTAAAAGAAAAAAAATATTTAATTATTTGTATTTTTTTTATATCTCTTTAAATTTTTTCTTCCTCTCCTAACTTTGTTTCTCTTTCTAAAATGTTCTCTTTCAAACTTTTGTCCATCCTCATTATTTGAAAATTTTAATAACTTTTTTGTCTCCAAAATATTTGTTTTTTTTCTTTTTTTGTTAAAATTTTATAAACTTACTTACAATTTATAAAAGAATTCATTTGTTCTACTAACTTTTTTAAGTCATTTTTTAATATTGTAAACAAATGCATTTATTATTATTATTATTGTACACATACATCTCACCTCGTAAGTGAAAGAATGCAACAGTTTGATATGTAACTAACTCCGTTGAGTTTGTGTGACAGTCGCAACTCATTGATATGAATGGTATCTATTGGACTCAAAAGACACATGCATTCAAAGAATCATGCCTATCTCGAAGAGTTGCATCATTTGCGCCTACTAGACTCAACAGACACTACACTTAGAATTGTATCCCATCTAAAAATGGTAAGTTAAGGATTTAATATAAAAAACATAGGATCAAAATGGAAAGACAAAGATTCTCCCCTTATACCACCTTTTATATATAGTTTGAAAACAATATTTCTTGTATGTTGAAAAATAATAAACAGAAACTATAGTTGAACATCTTTAACTATATTTTTGGATAATTATCTTAATTTGATATATGCATATGAAACATTATTTGATTTTTATTGAGATGTAGATTTTGTTGAAGCATAGATGGAGGACTTCTATGCTATGGAATGAAAATATTAGTAAGGAATGTTCATTTTTTGTGGTAAATGTGTGGGGACATTGTGTTGGGTTTCTACTAGTAAGTTAATCGTCATTGTACAAATGAATTTAAAGAAATCGACATTCACATTCTCATCCCTTGTTCCTCTTCTTTCTACTCAAGAACGAATGTCATTTACTTTGAATTTGTATTCACTCATTTGCAAGTTTTTCTTTTAATTTGCTTAGATTGTTGCAAGTTTTTCGTTGTTACATGCATGCCATTGGGTGTTGCTTGTATTGCCTGTATTTCCAAAAGTATCATATGTTGTATATGATCTGAAATGATTCTTCTTTTTTAAAAAAAAAAACAAAATAATAATGTGAAAATATCGATAAATATAAAAAGAAAAATATATCGTAAATAATGTAAGTAATCCGGCCAAAATGAATCTAGCTTAACTAGCATAGTACTAGTATTAAATCTCAAAACTAGAGGTACTCAATCGTTTTATCGTTGGAGTTAAAGAAAAATTTACTTGATGTTTTTTATGAAAAAACTAACTTTGTTGTTACAAACTTATTTTTCAAACTTCATAAAATCTAATAAGTCGACCATTAATGATATCATGGGATAAAGAATTCATCACTATGAAGTTGAATTGCAAAGATCAAATCTAAATATAATAACTTTCAACATTTAAAAATATGAAGAGATTTTTTGTACGCAAAACAAGGAGATACTTGCAAAATATCGGGAAATTTTCAGTTAAAATTCTAATAGCAGTGGTTTTTTTTTTCAAAAAAAAAAAATTAATTAAATTTTCGTGTTTAAGTTCAATAAAAAGGTAAATGGGCCTTGTTGGATTAAGCTTATCTCAAATGACAGCCCATCTTATCTCAAATGACGGCCCATGTAGGGTTTGGAACAACTCATTATCTTCGTTTCCCTTTGAACCTCCACATAAATGACAACTTCTAAAAGCTAGGGTTTTGAGCCTCCACAATCAGAAGCTACTCGGCAATCTCAGCTCTGCCACCACAATGGTACTTCTCAAATTCTAATTCCTAATTTCATTGCTTTTCTATTGTTCTTATCCTTCATATACGTTCATGATTCAATCCACTTTTGATTTATTAGTATTATGTTTGCTGTCGCCGACTTGTCATCTGCTCTGATTTAGTTTCTCTTCTATCTTGTTGAACGTTATGAGGCTGCATATCCTCATTAGCTAACAATTTCAGATGTTCTACTCACGCTGAAATTTGAGGCGTTCTTGAGTATTTTTTTTGTTAAGGTCTACGAGGATTTAAGTAACAGTTTGAGATGCAGATTTTGTTCCTCAAAATTCTTCACTTTTGTGCACACGTCTCCCTCTCGTTTGCATATCTTATGCCTTGGGTTATTTTATAATCAATTCTTTGTCTTTTTGTTCCATATTTCAATTTGCAGCCGAAACAAATTCACGAGATCAAAGATTTCCTTCTCACTGCTAGAAGGAAAGATGCTCGTTCTGTGAAAATTAAGAGGAGCAAAGATGTGGTGAAGTTCAAAGTTCGATGCTCCAAATATCTTTATACTCTTTGTGTTTTCGACTCTGAGAAAGCAGACAAGTTGAAGCAATCTCTTCCACCAGGTTAGATTTTCTTTCTCAAGAACCAACACTGCGATGTTTTAAGAGCATTAATGATATATTGGAAGTAGCTATAACTGTAGCTAGGTGAAGTGTTTTTAATTGGTTAGATAGATTACATACAAGTGTTTCATAATTTGTTTGTGAAGGCTATAAATTTCCGAGGAAGAGGCTAAAAACACTCGTGTGTGCTTTTATCATGTGCTTTTGGCTTAAATGAACCTTAAATTTCCTAAAACACACTTTTTCTTTAGACTAACTTCCCTTTAAGTACAAATAGAAACTCTCGCACAAATCTCCCGCTTGTGATTTTTTCCTCTACAAGTTTGTATGTGCTTCTTGCTTCCATATATCGGTCTCTTTACAAAATTGTGTATTTCTTTAGCACTGCCCACATCACTTATCTTCTTAACCATAAGGATGAATTGCTTACGATGAATCCCCTTGTAGATAGGGGCAAACCCTTCGGCAGGCTTGCTTTTCCCCCTTCCTTGGGGAATTTTTACTTGACTCTTGAGACGAATTTTAGACATTTAGGAGTTTAGAGATCTGGGTAGGTTATTAGCTTCTTGGGGGTTCAGTCGTCAAGTTAGGCTTCATTTGTTTGGATTGGTGTTCGGATTCCTTTTTTTCAACTCCCGGCGTATTCATTCACTATCTATGAAAGCATGGTTTCTTGTTAAAATAAATATTAAAATACTATTTTGGTCTTGTATTTTAGGACTTACATTTTAGTTTTGTCTTATTTTAGTCCTCACACCTTCAATTAATTTTTAAGTTTTAGTCTATTTTAGTTTATGGCGAACTTTTTCAAAAAGTATAATGAGATCATCTCTACTATCCTTCATCCCATCAATTCTGGAGGAAAATTTTTTACATTCACTTTTCTTAAATAGAAATTATTATAATTATTTTATGAAGTTTGACATAAAAAAAATATTAACCTCAAACTAACCTAAAATGACTAATTTCGAAATTTAAGAAAGAATATGGACTAAAATTGGACATTTGGGAGTTTTGTGACTAAGTTTGAATGAATCCAAATTACATGGATGAAAATGGTATTTTAACGTAGAACAAAATTGGTGCCTATTACATTTTGCTAGGATGAAGATGACTTTGGTTTGAATACTGACTGACATTTATTTTTCCACTTTGGCAGGTTTGAGTGTGCAAGATCTGTGAAAGAATGGTTAAAGTCTCAAATGATCACAAGAATGAGAACCAAAATTTTTGTATGATGTTTGCTTTCCCAACTATTCAGAATACATTTAAATTGGATTTGAGCCTTTAGTAATCCGTATTTATCTTCGTTTTCCAGTGGATTGGTTTAAATTTAGAATTGTTATGTTGAGTTTATCATGTGAGTTGATATTTCGTTGAATTCATGGCTACTCCCGCGGTGTTTATAACCAAAGATGGATTTGAT

mRNA sequence

ATGATTCCCGAGCGAGAAGCGAGACTTGAGCGAGAGCACGAGAGCCGAGACAGCGAAACCGGCGAGAGAGCAATACCACGAGGCTGCGGCGACACTGGGCGCGGGGAAAGCGTGAGTCGAGCGGGAGAGCGAGAGAGCGAGAGCGCGAGAGAGCGGGAGCTAGCGAGAGATACCACGAGAGTGACTGTGCGATTGGGCGCGGGAGACCGTGAGGCGAGGGAAGAAAGTGAGAGCGGGAGAGCGAGACAGCTAGCGAGAGTTGAATGCCGACAGCGACACTCAAGGCGAAACCCGCGACACCCGACGCGTGAAACCTCCGGAGAGTCACGGAAACTGAAGGAGAGCGAGAGAGAGAGGTGTCGGGCAGAGGGAGGCTGGCGGCGACGGCGGCGGCGAAAGGGAAAGGGAAAGGAGAGAGATGCGGCGGAGAGAGAGAGAGAATTTTTTTTTTTCTTTTCTCTTTTTCTTTTTGACTGCACGGGAAACGAGGGAAATTTACCTCAAGGGTTCGGGGTCGTTACAGAAAGCCTAGATAACATTCGATCCTTCAAGATGATATCTCATGTTTCTTCAATATGGGTTTTGAGCCTCCACAATCAGAAGCTACTCGGCAATCTCAGCTCTGCCACCACAATGCCGAAACAAATTCACGAGATCAAAGATTTCCTTCTCACTGCTAGAAGGAAAGATGCTCGTTCTGTGAAAATTAAGAGGAGCAAAGATGTGGTGAAGTTCAAAGTTCGATGCTCCAAATATCTTTATACTCTTTGTGTTTTCGACTCTGAGAAAGCAGACAAGTTGAAGCAATCTCTTCCACCAGGTTTGAGTGTGCAAGATCTGTGAAAGAATGGTTAAAGTCTCAAATGATCACAAGAATGAGAACCAAAATTTTTGTATGATGTTTGCTTTCCCAACTATTCAGAATACATTTAAATTGGATTTGAGCCTTTAGTAATCCGTATTTATCTTCGTTTTCCAGTGGATTGGTTTAAATTTAGAATTGTTATGTTGAGTTTATCATGTGAGTTGATATTTCGTTGAATTCATGGCTACTCCCGCGGTGTTTATAACCAAAGATGGATTTGAT

Coding sequence (CDS)

ATGATTCCCGAGCGAGAAGCGAGACTTGAGCGAGAGCACGAGAGCCGAGACAGCGAAACCGGCGAGAGAGCAATACCACGAGGCTGCGGCGACACTGGGCGCGGGGAAAGCGTGAGTCGAGCGGGAGAGCGAGAGAGCGAGAGCGCGAGAGAGCGGGAGCTAGCGAGAGATACCACGAGAGTGACTGTGCGATTGGGCGCGGGAGACCGTGAGGCGAGGGAAGAAAGTGAGAGCGGGAGAGCGAGACAGCTAGCGAGAGTTGAATGCCGACAGCGACACTCAAGGCGAAACCCGCGACACCCGACGCGTGAAACCTCCGGAGAGTCACGGAAACTGAAGGAGAGCGAGAGAGAGAGGTGTCGGGCAGAGGGAGGCTGGCGGCGACGGCGGCGGCGAAAGGGAAAGGGAAAGGAGAGAGATGCGGCGGAGAGAGAGAGAGAATTTTTTTTTTTCTTTTCTCTTTTTCTTTTTGACTGCACGGGAAACGAGGGAAATTTACCTCAAGGGTTCGGGGTCGTTACAGAAAGCCTAGATAACATTCGATCCTTCAAGATGATATCTCATGTTTCTTCAATATGGGTTTTGAGCCTCCACAATCAGAAGCTACTCGGCAATCTCAGCTCTGCCACCACAATGCCGAAACAAATTCACGAGATCAAAGATTTCCTTCTCACTGCTAGAAGGAAAGATGCTCGTTCTGTGAAAATTAAGAGGAGCAAAGATGTGGTGAAGTTCAAAGTTCGATGCTCCAAATATCTTTATACTCTTTGTGTTTTCGACTCTGAGAAAGCAGACAAGTTGAAGCAATCTCTTCCACCAGGTTTGAGTGTGCAAGATCTGTGA

Protein sequence

MIPEREARLEREHESRDSETGERAIPRGCGDTGRGESVSRAGERESESARERELARDTTRVTVRLGAGDREAREESESGRARQLARVECRQRHSRRNPRHPTRETSGESRKLKESERERCRAEGGWRRRRRRKGKGKERDAAEREREFFFFFSLFLFDCTGNEGNLPQGFGVVTESLDNIRSFKMISHVSSIWVLSLHNQKLLGNLSSATTMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
Homology
[Close]
BLAST of Clc06G01060 vs. NCBI nr
Match: XP_038906668.1 (60S ribosomal protein L38-like [Benincasa hispida])

HSP 1 Score: 163.3 bits (412), Expect = 3.0e-36
Identity = 86/112 (76.79%), Postives = 93/112 (83.04%), Query Frame = 0 

Query: 169 GFGVVTESLDNIRSFKMISHVSSIWVLSLHNQKLLGNLSSATTMPKQIHEIKDFLLTARR 228
           GFG          +  + ++   +  LSLHNQ+LLG+LSSAT MPKQIHEIKDFLLTARR
Sbjct: 16  GFGTTQHHRRFPLNLLINNNFQKLGFLSLHNQQLLGSLSSATKMPKQIHEIKDFLLTARR 75

Query: 229 KDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 281
           KDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
Sbjct: 76  KDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 127

[Close]
BLAST of Clc06G01060 vs. NCBI nr
Match: KAE8646721.1 (hypothetical protein Csa_005163 [Cucumis sativus])

HSP 1 Score: 149.4 bits (376), Expect = 4.5e-32
Identity = 77/103 (74.76%), Postives = 88/103 (85.44%), Query Frame = 0 

Query: 178 DNIRSFKMISHVSSIWVLSLHNQKLLGNLSSATTMPKQIHEIKDFLLTARRKDARSVKIK 237
           D+ ++ K+   +  + VL+LHNQ+L G+L SAT MPKQIHEIKDFLLTARRKDARSVKIK
Sbjct: 49  DSEKADKLKQSLPPVRVLTLHNQQLRGSLCSATKMPKQIHEIKDFLLTARRKDARSVKIK 108

Query: 238 RSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 281
           RSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPP    ++L
Sbjct: 109 RSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPDYDPRNL 151

[Close]
BLAST of Clc06G01060 vs. NCBI nr
Match: QCG74680.1 (60S ribosomal protein L38-like protein, partial [Coffea canephora])

HSP 1 Score: 141.0 bits (354), Expect = 1.6e-29
Identity = 71/74 (95.95%), Postives = 72/74 (97.30%), Query Frame = 0 

Query: 207 SSATTMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADK 266
           SS+  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADK
Sbjct: 12  SSSLNMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADK 71

Query: 267 LKQSLPPGLSVQDL 281
           LKQSLPPGLSVQDL
Sbjct: 72  LKQSLPPGLSVQDL 85

[Close]
BLAST of Clc06G01060 vs. NCBI nr
Match: XP_027917741.1 (60S ribosomal protein L38-like [Vigna unguiculata])

HSP 1 Score: 141.0 bits (354), Expect = 1.6e-29
Identity = 70/78 (89.74%), Postives = 73/78 (93.59%), Query Frame = 0 

Query: 203 LGNLSSATTMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSE 262
           +G L +  TMPKQIHEIKDFLLTARRKDARSVKIKRS+DVVKFKVRCSKYLYTLCVFD E
Sbjct: 22  VGTLKTQVTMPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDPE 81

Query: 263 KADKLKQSLPPGLSVQDL 281
           KADKLKQSLPPGLSVQDL
Sbjct: 82  KADKLKQSLPPGLSVQDL 99

[Close]
BLAST of Clc06G01060 vs. NCBI nr
Match: CDP18171.1 (unnamed protein product [Coffea canephora])

HSP 1 Score: 141.0 bits (354), Expect = 1.6e-29
Identity = 71/74 (95.95%), Postives = 72/74 (97.30%), Query Frame = 0 

Query: 207 SSATTMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADK 266
           SS+  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADK
Sbjct: 31  SSSLNMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADK 90

Query: 267 LKQSLPPGLSVQDL 281
           LKQSLPPGLSVQDL
Sbjct: 91  LKQSLPPGLSVQDL 104

[Close]
BLAST of Clc06G01060 vs. ExPASy Swiss-Prot
Match: O22860 (60S ribosomal protein L38 OS=Arabidopsis thaliana OX=3702 GN=RPL38A PE=3 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.5e-30
Identity = 66/69 (95.65%), Postives = 68/69 (98.55%), Query Frame = 0 

Query: 212 MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 271
           MPKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSL
Sbjct: 1   MPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSL 60

Query: 272 PPGLSVQDL 281
           PPGLSVQDL
Sbjct: 61  PPGLSVQDL 69

[Close]
BLAST of Clc06G01060 vs. ExPASy Swiss-Prot
Match: P46291 (60S ribosomal protein L38 OS=Solanum lycopersicum OX=4081 GN=RPL38 PE=3 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.8e-28
Identity = 63/69 (91.30%), Postives = 67/69 (97.10%), Query Frame = 0 

Query: 212 MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 271
           MPKQIHEIKDFLLTARRKDAR+VKIK++KD+VKFKVRCSKYLYTLCV D EKADKLKQSL
Sbjct: 1   MPKQIHEIKDFLLTARRKDARTVKIKKNKDMVKFKVRCSKYLYTLCVSDFEKADKLKQSL 60

Query: 272 PPGLSVQDL 281
           PPGLSVQDL
Sbjct: 61  PPGLSVQDL 69

[Close]
BLAST of Clc06G01060 vs. ExPASy Swiss-Prot
Match: Q95V84 (60S ribosomal protein L38 OS=Branchiostoma belcheri OX=7741 GN=RPL38 PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.5e-25
Identity = 57/69 (82.61%), Postives = 65/69 (94.20%), Query Frame = 0 

Query: 212 MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 271
           MPKQIHEIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKADKLKQSL
Sbjct: 1   MPKQIHEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKADKLKQSL 60

Query: 272 PPGLSVQDL 281
           PPGL+V++L
Sbjct: 61  PPGLAVKEL 69

[Close]
BLAST of Clc06G01060 vs. ExPASy Swiss-Prot
Match: Q9JJI8 (60S ribosomal protein L38 OS=Mus musculus OX=10090 GN=Rpl38 PE=1 SV=3)

HSP 1 Score: 111.7 bits (278), Expect = 1.4e-23
Identity = 54/69 (78.26%), Postives = 64/69 (92.75%), Query Frame = 0 

Query: 212 MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 271
           MP++I EIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKA+KLKQSL
Sbjct: 1   MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSL 60

Query: 272 PPGLSVQDL 281
           PPGL+V+DL
Sbjct: 61  PPGLAVKDL 69

[Close]
BLAST of Clc06G01060 vs. ExPASy Swiss-Prot
Match: Q32PB9 (60S ribosomal protein L38 OS=Bos taurus OX=9913 GN=RPL38 PE=3 SV=4)

HSP 1 Score: 110.2 bits (274), Expect = 4.0e-23
Identity = 53/69 (76.81%), Postives = 64/69 (92.75%), Query Frame = 0 

Query: 212 MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 271
           MP++I EIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKA+KLKQSL
Sbjct: 1   MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSL 60

Query: 272 PPGLSVQDL 281
           PPGL+V++L
Sbjct: 61  PPGLAVKEL 69

[Close]
BLAST of Clc06G01060 vs. ExPASy TrEMBL
Match: A0A068VBT7 (Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00007069001 PE=3 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 7.7e-30
Identity = 71/74 (95.95%), Postives = 72/74 (97.30%), Query Frame = 0 

Query: 207 SSATTMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADK 266
           SS+  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADK
Sbjct: 31  SSSLNMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADK 90

Query: 267 LKQSLPPGLSVQDL 281
           LKQSLPPGLSVQDL
Sbjct: 91  LKQSLPPGLSVQDL 104

[Close]
BLAST of Clc06G01060 vs. ExPASy TrEMBL
Match: A0A4D6T016 (60S ribosomal protein L38-like protein (Fragment) OS=Coffea canephora OX=49390 PE=2 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 7.7e-30
Identity = 71/74 (95.95%), Postives = 72/74 (97.30%), Query Frame = 0 

Query: 207 SSATTMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADK 266
           SS+  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADK
Sbjct: 12  SSSLNMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADK 71

Query: 267 LKQSLPPGLSVQDL 281
           LKQSLPPGLSVQDL
Sbjct: 72  LKQSLPPGLSVQDL 85

[Close]
BLAST of Clc06G01060 vs. ExPASy TrEMBL
Match: V7CR14 (Uncharacterized protein (Fragment) OS=Phaseolus vulgaris OX=3885 GN=PHAVU_002G233500g PE=3 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 1.3e-29
Identity = 83/126 (65.87%), Postives = 95/126 (75.40%), Query Frame = 0 

Query: 161 GNEGNLPQGFGVVTESLD-NIRSFKMISHVSSIWVLSLHNQKLLGNLSSAT-----TMPK 220
           GN+ + P G  +V  S +  IR + +   +  ++ L+ H   L+  L SAT     TMPK
Sbjct: 2   GNKWSRPTGPNIVWASREYRIRVYDV--PLPLVFQLTSH---LVAPLFSATAVSIATMPK 61

Query: 221 QIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG 280
           QIHEIKDFLLTARRKDARSVKIKRS+DVVKFKVRCSKYLYTLCVFD EKADKLKQSLPPG
Sbjct: 62  QIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDPEKADKLKQSLPPG 121

[Close]
BLAST of Clc06G01060 vs. ExPASy TrEMBL
Match: A0A5E4FVX4 (PREDICTED: 60S ribosomal (Fragment) OS=Prunus dulcis OX=3755 GN=ALMOND_2B033102 PE=3 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 2.9e-29
Identity = 70/73 (95.89%), Postives = 70/73 (95.89%), Query Frame = 0 

Query: 208 SATTMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKL 267
           SA  MPKQIHEIKDFLLTARRKDARSVKIKRSKD VKFKVRCSKYLYTLCVFDSEKADKL
Sbjct: 75  SAVRMPKQIHEIKDFLLTARRKDARSVKIKRSKDAVKFKVRCSKYLYTLCVFDSEKADKL 134

Query: 268 KQSLPPGLSVQDL 281
           KQSLPPGLSVQDL
Sbjct: 135 KQSLPPGLSVQDL 147

[Close]
BLAST of Clc06G01060 vs. ExPASy TrEMBL
Match: A0A4Y1QP30 (Ribosomal L38e protein family OS=Prunus dulcis OX=3755 GN=Prudu_001682 PE=3 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 2.9e-29
Identity = 70/73 (95.89%), Postives = 70/73 (95.89%), Query Frame = 0 

Query: 208 SATTMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKL 267
           SA  MPKQIHEIKDFLLTARRKDARSVKIKRSKD VKFKVRCSKYLYTLCVFDSEKADKL
Sbjct: 87  SAVRMPKQIHEIKDFLLTARRKDARSVKIKRSKDAVKFKVRCSKYLYTLCVFDSEKADKL 146

Query: 268 KQSLPPGLSVQDL 281
           KQSLPPGLSVQDL
Sbjct: 147 KQSLPPGLSVQDL 159

[Close]
BLAST of Clc06G01060 vs. TAIR 10
Match: AT2G43460.1 (Ribosomal L38e protein family )

HSP 1 Score: 134.8 bits (338), Expect = 1.1e-31
Identity = 66/69 (95.65%), Postives = 68/69 (98.55%), Query Frame = 0 

Query: 212 MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 271
           MPKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSL
Sbjct: 1   MPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSL 60

Query: 272 PPGLSVQDL 281
           PPGLSVQDL
Sbjct: 61  PPGLSVQDL 69

[Close]
BLAST of Clc06G01060 vs. TAIR 10
Match: AT3G59540.1 (Ribosomal L38e protein family )

HSP 1 Score: 134.8 bits (338), Expect = 1.1e-31
Identity = 66/69 (95.65%), Postives = 68/69 (98.55%), Query Frame = 0 

Query: 212 MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 271
           MPKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSL
Sbjct: 1   MPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSL 60

Query: 272 PPGLSVQDL 281
           PPGLSVQDL
Sbjct: 61  PPGLSVQDL 69

The following BLAST results are available for this feature:
BLAST of Clc06G01060 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038906668.13.0e-3676.7960S ribosomal protein L38-like [Benincasa hispida][more]
KAE8646721.14.5e-3274.76hypothetical protein Csa_005163 [Cucumis sativus][more]
QCG74680.11.6e-2995.9560S ribosomal protein L38-like protein, partial [Coffea canephora][more]
XP_027917741.11.6e-2989.7460S ribosomal protein L38-like [Vigna unguiculata][more]
CDP18171.11.6e-2995.95unnamed protein product [Coffea canephora][more]
BLAST of Clc06G01060 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O228601.5e-3095.6560S ribosomal protein L38 OS=Arabidopsis thaliana OX=3702 GN=RPL38A PE=3 SV=1[more]
P462911.8e-2891.3060S ribosomal protein L38 OS=Solanum lycopersicum OX=4081 GN=RPL38 PE=3 SV=1[more]
Q95V842.5e-2582.6160S ribosomal protein L38 OS=Branchiostoma belcheri OX=7741 GN=RPL38 PE=3 SV=1[more]
Q9JJI81.4e-2378.2660S ribosomal protein L38 OS=Mus musculus OX=10090 GN=Rpl38 PE=1 SV=3[more]
Q32PB94.0e-2376.8160S ribosomal protein L38 OS=Bos taurus OX=9913 GN=RPL38 PE=3 SV=4[more]
BLAST of Clc06G01060 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A068VBT77.7e-3095.95Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00007069001 PE=3 ... [more]
A0A4D6T0167.7e-3095.9560S ribosomal protein L38-like protein (Fragment) OS=Coffea canephora OX=49390 P... [more]
V7CR141.3e-2965.87Uncharacterized protein (Fragment) OS=Phaseolus vulgaris OX=3885 GN=PHAVU_002G23... [more]
A0A5E4FVX42.9e-2995.89PREDICTED: 60S ribosomal (Fragment) OS=Prunus dulcis OX=3755 GN=ALMOND_2B033102 ... [more]
A0A4Y1QP302.9e-2995.89Ribosomal L38e protein family OS=Prunus dulcis OX=3755 GN=Prudu_001682 PE=3 SV=1[more]
BLAST of Clc06G01060 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G43460.11.1e-3195.65Ribosomal L38e protein family [more]
AT3G59540.11.1e-3195.65Ribosomal L38e protein family [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038464Ribosomal protein L38e superfamilyGENE3D3.30.720.90coord: 212..280
e-value: 6.1E-35
score: 121.1
IPR002675Ribosomal protein L38ePFAMPF01781Ribosomal_L38ecoord: 213..279
e-value: 7.8E-33
score: 112.4
IPR002675Ribosomal protein L38ePANTHERPTHR1096560S RIBOSOMAL PROTEIN L38coord: 212..280
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..24
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 100..123
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..138
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 37..91
NoneNo IPR availablePANTHERPTHR10965:SF18SUBFAMILY NOT NAMEDcoord: 212..280

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc06G01060.1Clc06G01060.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0022618 ribonucleoprotein complex assembly
biological_process GO:0006412 translation
cellular_component GO:0022625 cytosolic large ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome