Clc06G00490 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TGGAGCTCTCGCGAAGTTAGACGTGGTATATAGACCCCGCATGATCCCCAACGGCCATTTGAGAAGAACGTCAGCTTTTCTAGTTTCTTCTTCGTAGTTCCCCTGTTCGCGGGTTTCTCAATCCCTCGAGAATTTCCAGGTAATTCCTAGCAGACCTTAGTAACAAAACAAATCGTTCGGTTTTTCTTGTTCTGGTTTATTTGTGATGGAACATGATTTGGATGATAATGGAGAGTCTACTAATTTATCTTTCTGTTGATTTTCAAAATATTGTTGCATTTTTGGGATCCGAACCTCGAAATTACTATTTATTGCTGGAATCGTCAAGAATCTGAACGGAACGAAAATGTAATCAATACTGATGCTTTGTTATTTTTCCCATTTGAATGAGGCTTTGAGTTGATTATTATAGTTCTTGGCTTCTCCCCTGTTGCTGTTATTGCTTTAAAGTTCTATTGAATCTGAGAAATTGGTGGATTTCAGTCATATCTATTTTCGTCTCACTCCACCGTGCTATTCATGCGCTTGTTCACGACGCTGGAGATTTTATGGATTGCCTTTAAATTTTGTCTCAGTGTACTGTTTTCTTTGTTGTAGCTTCTCTAGGTTACTGTTCTTCAGTAGAAATTAGCAGATATAATATGCAGCAAAGGGGAGCGGCAGAAGGGAAGGACTCACTTTTCTCAGGCGACTTCATGGGTGGTTTCCCTGGATTTGGTTTATTTGGATCACACAGAAGTATGATGTCTAACCTTTTCGGGGAGAGGGATCCATTTGATGATCCATTTTTTACTCGCCCGTTCGGTAGCATGTTCGAGTCGAGTGTATCCGACTCCCATACCTCTGCGTATGATAAAGGGAAGAAAGATGGGGCACACGGACTTGTGATTCAAGAAATCTCCTCTGATGAGGAGATGGAGGAAGATGATGACCTTAGGGATCAGAAAAAGGACAGGAATGAGAATAATTCTGGGTCGGGCAAGGAGCCATCAGTTGAGCATCCTGATGATTCCAATGATGGTAATTGAGCTCTGATTTTGATGTCCATTGTTTTCATAAACCATGTTATTCAAATTTTACCATGCTTCAATTATTTCCTTGGTTGATGTACTAGAGTGCCAGATAATGACTCATAGAGGTAGTGAAGATAATAGTTTCAGAGTTCAGCCAAAGGCTAGGAAATCCAGTATGCATTCTTGCAAGGTCACATATGGCGGTGTAGATGGAGCGTACTACTCTTCTACTAGAACTAGAAGAGTAGATGACGAGGGTGTAAGTCAAGTTCTTGTGAAGTGACTGTAAACTTTGTGGATAAACTATTGGGTTTTTATAGCAGGTTTTGTGAATCAGGTATTGCTTGAAGAGACGAAAGAAGCAGATAAGACAACAGGTCAGGCCACTCATAGGATCTCTAGAGGAATTCATGATAAGGTATAGATTGAAAATGGAACTCCAATCCTTAAATTATTTGACATCACTTTATGTCTTGTCCTTGATTATCTTTAATGGTGGCTTGGCATTGAATCCATGAAAATCTAGAAAAATCTAGTCTAGGTACATACTCTGTAAATGTTTTTCCCTCCAATTTTTCTGCTTGTTTCATACAAGTTTTGAGTGCTTGCCCGTTGTTAGTATTGTGAAACCATGCAGCTAATATGCAGTCCCTGAGTGCTACGAATACTATTAGTGGCGTTATATTGAAATGTGTAATTTTAAATTTATGCCCAGTGTGCGAAAATTGTCTTCTATTATGTTTGTGATCTAATCGTTTCCATTTAGAGCGTCAGTCTTGTGTTACATGCTTCATTTTCTGTGTGATCTTTCCGATATTCGCTTCTAATCTTTATTACTCGAGATATGATGGGGAAATAGATAACTGGGAACTAAAACAATTGCATTGCTTCTGCAGGGTCATTCGGTCACGAGGAAATTGAACCCAGATGGTAAAGTGAACGTAGTTCAGACTCTGCACAATCTTAACGAAGGTCTGCTCTATCTAACCATAATTAATAATTATCTTGGTTTCTTCATGTAGAAGCTATAACATCGTGTTGTGTTGCATTACTTTCTTACAGAAGAGCTACCTGGTTTTGACCAAGCATGGAACGGTAATTTTCAAGGGCATAAATATATTCCGAAAGGTGAATTTCATATGGATCCCAATGCAGGTAATCCTGATTATTTGCCTTTCCAGATGCATTTTTCTATCAACCACTCTAACCTAACCCCATTTTAACGTCATATCTTCCATTGCCATATAGACGCGACAGTTTCTTTCTTTATGTGTAAACCCAGCATATCTTAGTTCGGTTTGGTTCAGTTGATCTCTCGAATACACCAACTGCGATATACATATATGAAATTTCTAATATGTTCTGCTGTTTTTCTTAAAAGATTCTCTAAAATGACTTTACAATGGCACTTCAGTTTGCTCTTTGGTGTTGGTGTTTAATTCTGGTTATCATTAACAATGCAGAATCCAGTGGCAGTAGAAACAATGAGATGATCAGTTGGGGTTTTCCATCCTTTGCTGAAAGGAGAAATGAACATGATGGTGCAAGGGTCAGCTCTAGTTCTGGTAGAACCAAAAAAGTAATCAGGATCAACATAGAATAGAAGGTGATGCACGAGGGGATATTGCATATAGTTGAATGAAAGTAAATTAATAATAGCATCTTTCTTTTCTCTCTCTCTCTCTCTCTCT TGGAGCTCTCGCGAAGTTAGACGTGGTATATAGACCCCGCATGATCCCCAACGGCCATTTGAGAAGAACGTCAGCTTTTCTAGTTTCTTCTTCGTAGTTCCCCTGTTCGCGGGTTTCTCAATCCCTCGAGAATTTCCAGCTTCTCTAGGTTACTGTTCTTCAGTAGAAATTAGCAGATATAATATGCAGCAAAGGGGAGCGGCAGAAGGGAAGGACTCACTTTTCTCAGGCGACTTCATGGGTGGTTTCCCTGGATTTGGTTTATTTGGATCACACAGAAGTATGATGTCTAACCTTTTCGGGGAGAGGGATCCATTTGATGATCCATTTTTTACTCGCCCGTTCGGTAGCATGTTCGAGTCGAGTGTATCCGACTCCCATACCTCTGCGTATGATAAAGGGAAGAAAGATGGGGCACACGGACTTGTGATTCAAGAAATCTCCTCTGATGAGGAGATGGAGGAAGATGATGACCTTAGGGATCAGAAAAAGGACAGGAATGAGAATAATTCTGGGTCGGGCAAGGAGCCATCAGTTGAGCATCCTGATGATTCCAATGATGAGTGCCAGATAATGACTCATAGAGGTAGTGAAGATAATAGTTTCAGAGTTCAGCCAAAGGCTAGGAAATCCAGTATGCATTCTTGCAAGGTCACATATGGCGGTGTAGATGGAGCGTACTACTCTTCTACTAGAACTAGAAGAGTAGATGACGAGGGTGTATTGCTTGAAGAGACGAAAGAAGCAGATAAGACAACAGGTCAGGCCACTCATAGGATCTCTAGAGGAATTCATGATAAGGGTCATTCGGTCACGAGGAAATTGAACCCAGATGGTAAAGTGAACGTAGTTCAGACTCTGCACAATCTTAACGAAGAAGAGCTACCTGGTTTTGACCAAGCATGGAACGGTAATTTTCAAGGGCATAAATATATTCCGAAAGGTGAATTTCATATGGATCCCAATGCAGAATCCAGTGGCAGTAGAAACAATGAGATGATCAGTTGGGGTTTTCCATCCTTTGCTGAAAGGAGAAATGAACATGATGGTGCAAGGGTCAGCTCTAGTTCTGGTAGAACCAAAAAAGTAATCAGGATCAACATAGAATAGAAGGTGATGCACGAGGGGATATTGCATATAGTTGAATGAAAGTAAATTAATAATAGCATCTTTCTTTTCTCTCTCTCTCTCTCTCTCT ATGCAGCAAAGGGGAGCGGCAGAAGGGAAGGACTCACTTTTCTCAGGCGACTTCATGGGTGGTTTCCCTGGATTTGGTTTATTTGGATCACACAGAAGTATGATGTCTAACCTTTTCGGGGAGAGGGATCCATTTGATGATCCATTTTTTACTCGCCCGTTCGGTAGCATGTTCGAGTCGAGTGTATCCGACTCCCATACCTCTGCGTATGATAAAGGGAAGAAAGATGGGGCACACGGACTTGTGATTCAAGAAATCTCCTCTGATGAGGAGATGGAGGAAGATGATGACCTTAGGGATCAGAAAAAGGACAGGAATGAGAATAATTCTGGGTCGGGCAAGGAGCCATCAGTTGAGCATCCTGATGATTCCAATGATGAGTGCCAGATAATGACTCATAGAGGTAGTGAAGATAATAGTTTCAGAGTTCAGCCAAAGGCTAGGAAATCCAGTATGCATTCTTGCAAGGTCACATATGGCGGTGTAGATGGAGCGTACTACTCTTCTACTAGAACTAGAAGAGTAGATGACGAGGGTGTATTGCTTGAAGAGACGAAAGAAGCAGATAAGACAACAGGTCAGGCCACTCATAGGATCTCTAGAGGAATTCATGATAAGGGTCATTCGGTCACGAGGAAATTGAACCCAGATGGTAAAGTGAACGTAGTTCAGACTCTGCACAATCTTAACGAAGAAGAGCTACCTGGTTTTGACCAAGCATGGAACGGTAATTTTCAAGGGCATAAATATATTCCGAAAGGTGAATTTCATATGGATCCCAATGCAGAATCCAGTGGCAGTAGAAACAATGAGATGATCAGTTGGGGTTTTCCATCCTTTGCTGAAAGGAGAAATGAACATGATGGTGCAAGGGTCAGCTCTAGTTCTGGTAGAACCAAAAAAGTAATCAGGATCAACATAGAATAG MQQRGAAEGKDSLFSGDFMGGFPGFGLFGSHRSMMSNLFGERDPFDDPFFTRPFGSMFESSVSDSHTSAYDKGKKDGAHGLVIQEISSDEEMEEDDDLRDQKKDRNENNSGSGKEPSVEHPDDSNDECQIMTHRGSEDNSFRVQPKARKSSMHSCKVTYGGVDGAYYSSTRTRRVDDEGVLLEETKEADKTTGQATHRISRGIHDKGHSVTRKLNPDGKVNVVQTLHNLNEEELPGFDQAWNGNFQGHKYIPKGEFHMDPNAESSGSRNNEMISWGFPSFAERRNEHDGARVSSSSGRTKKVIRINIE Homology
BLAST of Clc06G00490 vs. NCBI nr
Match: XP_008460115.1 (PREDICTED: uncharacterized protein LOC103499022 isoform X1 [Cucumis melo] >XP_016902462.1 PREDICTED: uncharacterized protein LOC103499022 isoform X1 [Cucumis melo]) HSP 1 Score: 515.0 bits (1325), Expect = 4.5e-142 Identity = 260/309 (84.14%), Postives = 280/309 (90.61%), Query Frame = 0
BLAST of Clc06G00490 vs. NCBI nr
Match: KAA0039996.1 (myeloid leukemia factor 1 isoform X1 [Cucumis melo var. makuwa] >TYK24505.1 myeloid leukemia factor 1 isoform X1 [Cucumis melo var. makuwa]) HSP 1 Score: 511.1 bits (1315), Expect = 6.5e-141 Identity = 258/309 (83.50%), Postives = 279/309 (90.29%), Query Frame = 0
BLAST of Clc06G00490 vs. NCBI nr
Match: XP_023006456.1 (uncharacterized protein LOC111499178 [Cucurbita maxima] >XP_023006457.1 uncharacterized protein LOC111499178 [Cucurbita maxima]) HSP 1 Score: 505.4 bits (1300), Expect = 3.5e-139 Identity = 257/309 (83.17%), Postives = 277/309 (89.64%), Query Frame = 0
BLAST of Clc06G00490 vs. NCBI nr
Match: KAG6574795.1 (hypothetical protein SDJN03_25434, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 505.0 bits (1299), Expect = 4.6e-139 Identity = 258/309 (83.50%), Postives = 278/309 (89.97%), Query Frame = 0
BLAST of Clc06G00490 vs. NCBI nr
Match: XP_023547679.1 (uncharacterized protein LOC111806546 [Cucurbita pepo subsp. pepo] >XP_023547681.1 uncharacterized protein LOC111806546 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 503.1 bits (1294), Expect = 1.8e-138 Identity = 256/309 (82.85%), Postives = 276/309 (89.32%), Query Frame = 0
BLAST of Clc06G00490 vs. ExPASy TrEMBL
Match: A0A1S3CC93 (uncharacterized protein LOC103499022 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103499022 PE=3 SV=1) HSP 1 Score: 515.0 bits (1325), Expect = 2.2e-142 Identity = 260/309 (84.14%), Postives = 280/309 (90.61%), Query Frame = 0
BLAST of Clc06G00490 vs. ExPASy TrEMBL
Match: A0A5A7TD14 (Myeloid leukemia factor 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00470 PE=3 SV=1) HSP 1 Score: 511.1 bits (1315), Expect = 3.1e-141 Identity = 258/309 (83.50%), Postives = 279/309 (90.29%), Query Frame = 0
BLAST of Clc06G00490 vs. ExPASy TrEMBL
Match: A0A6J1KXU0 (uncharacterized protein LOC111499178 OS=Cucurbita maxima OX=3661 GN=LOC111499178 PE=3 SV=1) HSP 1 Score: 505.4 bits (1300), Expect = 1.7e-139 Identity = 257/309 (83.17%), Postives = 277/309 (89.64%), Query Frame = 0
BLAST of Clc06G00490 vs. ExPASy TrEMBL
Match: A0A6J1H4K0 (uncharacterized protein LOC111459979 OS=Cucurbita moschata OX=3662 GN=LOC111459979 PE=3 SV=1) HSP 1 Score: 500.0 bits (1286), Expect = 7.2e-138 Identity = 256/309 (82.85%), Postives = 276/309 (89.32%), Query Frame = 0
BLAST of Clc06G00490 vs. ExPASy TrEMBL
Match: A0A1S3CD29 (uncharacterized protein LOC103499022 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103499022 PE=3 SV=1) HSP 1 Score: 464.2 bits (1193), Expect = 4.4e-127 Identity = 243/309 (78.64%), Postives = 261/309 (84.47%), Query Frame = 0
BLAST of Clc06G00490 vs. TAIR 10
Match: AT2G45380.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: inflorescence meristem, flower, cultured cell; EXPRESSED DURING: petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT4G34070.1); Has 171 Blast hits to 170 proteins in 31 species: Archae - 2; Bacteria - 0; Metazoa - 68; Fungi - 0; Plants - 94; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). ) HSP 1 Score: 218.8 bits (556), Expect = 6.2e-57 Identity = 137/294 (46.60%), Postives = 181/294 (61.56%), Query Frame = 0
BLAST of Clc06G00490 vs. TAIR 10
Match: AT2G45380.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: inflorescence meristem, flower, cultured cell; EXPRESSED DURING: petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT4G22740.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 159.5 bits (402), Expect = 4.4e-39 Identity = 89/167 (53.29%), Postives = 111/167 (66.47%), Query Frame = 0
BLAST of Clc06G00490 vs. TAIR 10
Match: AT4G22740.1 (glycine-rich protein ) HSP 1 Score: 156.8 bits (395), Expect = 2.9e-38 Identity = 108/284 (38.03%), Postives = 148/284 (52.11%), Query Frame = 0
BLAST of Clc06G00490 vs. TAIR 10
Match: AT4G22740.2 (glycine-rich protein ) HSP 1 Score: 156.8 bits (395), Expect = 2.9e-38 Identity = 108/284 (38.03%), Postives = 148/284 (52.11%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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