Clc06G00420 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc06G00420
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	protein cornichon homolog 4-like
Location	ClcChr06: 381260 .. 383238 (-)
RNA-Seq Expression	Clc06G00420
Synteny	Clc06G00420

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGGAAGCCATGGGAGACCTCTTTGCTTGGCTCTTCAACTTATTCCTCCTCATATTTCTCATTGCCATTCTCGGCTATCAGGTTCTTTCTCTATTCCATCTCTCGCCAATGGCTTGCAATTTTTTTGTGCCATCTTTCATTCTCGTTGTTGAATGATTTTCTGCTGAAACTGTAGGTTTGCACTTCCGATTAATAGTTTAATTATAGATGAATGTCGAACTTCCGACTCCTTTCTTTTCTTGAAATAGAGGAAGTTTACAGAGAGATAGTAGTAACAAAATGTGTGTGAACGAAGATTGCAAGAAGTAATATGTCGAACAAGATTATTCAAGCTGTATCAAAATTGTCTCTGCAAAAAAGTCCGTTATAAGGGCTTTTCTTGCTGCTTTAATTACACAACTTAAAGCGTATTCATGCAAATCTTTTCTGGTTGCTTTTAACTGTTTATGTTTGCATGATTAGAAATCTGCCTAACAAAACGAAACAAAAAAAATCATGATTTGAGTTACTGCTGTGCTGCAGATTATATGCTTGGTGGATTTGGAGTCTGACTATATCAATCTCTTCGATTCGACATCTCGGATGAACAGAGTTATAATGTTGGAATTTATTGCCCAGGCAGTTTTCAGCTTTGTTCATCTTCCAGCACCCATTGGTTCATGTTTTTGTGTCACTTCCATGCCTATTCTTCAATGTCAGACTGTAGGTTCTGGTTTCCTGAATCCATTAACTCTACTGAACAACATTATTTTACTATAGGTCTCTGGGATCATTATTGAAGGATGGTACATGAAATTCAACTGGCTATGAAAGCTTGATATTTCAAAAACGGATTTTCTCGTCCAACTGACCATGGTTTGTTTGGTAGTGATTTTACATTGAGTTTGAAAAATGTTGTTTAGAGGTTTGAAAGTTATATGCCTTTTATATGCTTGACATTTCAGAATAAGTTGATTTTGAGGGACAGAAGCTAAACTGGCTTGAATATTGTAAATTCGTAGTTGATTGGTTAGTCCCCGATATAGCATATGGAAAAGATCTGCCTTAGGAAGAAATATAATGTAGAACTAAATGAACTATTTTCTTCCCAATAAAGACAGTTGAGTGGATTCTAAACATCTGATTTGTTTGAGAGGTAATTGATTTCTATTTCATGATCTGATGGGCTGATTACAATTTGGTTTGTATTTTCTAAGAGAACCCAGTAATTGTAAAGAAAAGCCTAGTGTAGTTTTTGGACAATAGTAATTTGGTTTCAAACTTCTATCTTTTGAGTTGGTCTAGTTACTTATTGGATCATGTGATAAATAAAAGGAACCTTTGGGAGAATGGGCTTGAACTCCGTGGTACTCACCTAGTTGGGATATTGAAATTCTAATTCCTTCGAGAGAATGACAACCAAATATTAGATTGTTGAGGATTCCACGTTAGAAAATTCAAGGGACTTCTTCTTGTTGCCGGATGGTTCTAAGATAGACTCCATGTTATCTAATATACATAAAAATTGTTCTCTTTCAACTTTGCTTGAGCACATTTGAATTCTGTACTCATGAATTTCCTTGATCTAACACAGTCATAAGGCTCGGTCTTTTAAATTCTAAATCTTGGCCTTGCCTTAATTCCATGGTGCGAAATACAAATAAATGCAACTTGACAACAGAGATTAAATCACTTGGAAGGATTCTTACTTGAGTGGAATTTGTAACTCCATTATTTTCAGGTATATTTGGAAAGAACACCTTGCAGATGTGACTGAGATCTATAACCAGATTGGCTGCGAGAAAAAGCAACGCTTTCTTAAGATGATTTATTTTCTTATACTATTTGTTATGGTACATACATATACTGATACTTTTGACATTTATGATGCTGATTTTATGTTCATTATAATCTATAAATTGTGTAACAATATTTATTACTTGAATTTGTTTGCAGGATGATTTGGAGCGTAGGAACTTTGGAGAAGAACTGGGATAG

mRNA sequence

ATGCGGAAGCCATGGGAGACCTCTTTGCTTGGCTCTTCAACTTATTCCTCCTCATATTTCTCATTGCCATTCTCGGCTATCAGATTATATGCTTGGCAGTTTTCAGCTTTGTTCATCTTCCAGCACCCATTGGTTCATGTTTTTGTGTCACTTCCATGCCTATTCTTCAATGTCAGACTGTATATTTGGAAAGAACACCTTGCAGATGTGACTGAGATCTATAACCAGATTGGCTGCGAGAAAAAGCAACGCTTTCTTAAGATGATTTATTTTCTTATACTATTTGTTATGGATGATTTGGAGCGTAGGAACTTTGGAGAAGAACTGGGATAG

Coding sequence (CDS)

ATGCGGAAGCCATGGGAGACCTCTTTGCTTGGCTCTTCAACTTATTCCTCCTCATATTTCTCATTGCCATTCTCGGCTATCAGATTATATGCTTGGCAGTTTTCAGCTTTGTTCATCTTCCAGCACCCATTGGTTCATGTTTTTGTGTCACTTCCATGCCTATTCTTCAATGTCAGACTGTATATTTGGAAAGAACACCTTGCAGATGTGACTGAGATCTATAACCAGATTGGCTGCGAGAAAAAGCAACGCTTTCTTAAGATGATTTATTTTCTTATACTATTTGTTATGGATGATTTGGAGCGTAGGAACTTTGGAGAAGAACTGGGATAG

Protein sequence

MRKPWETSLLGSSTYSSSYFSLPFSAIRLYAWQFSALFIFQHPLVHVFVSLPCLFFNVRLYIWKEHLADVTEIYNQIGCEKKQRFLKMIYFLILFVMDDLERRNFGEELG

Homology

[Close]

BLAST of Clc06G00420 vs. NCBI nr
Match: XP_008460129.1 (PREDICTED: protein cornichon homolog 4-like isoform X2 [Cucumis melo])

HSP 1 Score: 87.8 bits (216), Expect = 6.3e-14
Identity = 47/62 (75.81%), Postives = 51/62 (82.26%), Query Frame = 0


Query: 37  LFIFQHPLV-HVF---VSLPCLFFNVRLYIWKEHLADVTEIYNQIGCEKKQRFLKMIYFL 95
           +F F H L  H F   VSLPCL+FNVRLYI KEHLADVTEIYN IGCEKKQRFLK+IYFL
Sbjct: 58  VFSFVHLLARHWFMFLVSLPCLYFNVRLYIRKEHLADVTEIYNHIGCEKKQRFLKIIYFL 117

[Close]

BLAST of Clc06G00420 vs. NCBI nr
Match: XP_008460127.1 (PREDICTED: protein cornichon homolog 4-like isoform X1 [Cucumis melo])

HSP 1 Score: 87.8 bits (216), Expect = 6.3e-14
Identity = 47/62 (75.81%), Postives = 51/62 (82.26%), Query Frame = 0


Query: 37  LFIFQHPLV-HVF---VSLPCLFFNVRLYIWKEHLADVTEIYNQIGCEKKQRFLKMIYFL 95
           +F F H L  H F   VSLPCL+FNVRLYI KEHLADVTEIYN IGCEKKQRFLK+IYFL
Sbjct: 58  VFSFVHLLARHWFMFLVSLPCLYFNVRLYIRKEHLADVTEIYNHIGCEKKQRFLKIIYFL 117

[Close]

BLAST of Clc06G00420 vs. NCBI nr
Match: XP_022152825.1 (protein cornichon homolog 4-like isoform X1 [Momordica charantia] >XP_022152831.1 protein cornichon homolog 4-like isoform X1 [Momordica charantia])

HSP 1 Score: 84.3 bits (207), Expect = 7.0e-13
Identity = 45/63 (71.43%), Postives = 51/63 (80.95%), Query Frame = 0


Query: 36  ALFIFQHPLV-HVF---VSLPCLFFNVRLYIWKEHLADVTEIYNQIGCEKKQRFLKMIYF 95
           A+F F H L  H F   VSLPCL FN+RLY+ KEHLADVTEIYNQIG EKKQRF+KM+YF
Sbjct: 57  AVFCFVHLLARHWFMFLVSLPCLCFNIRLYVRKEHLADVTEIYNQIGWEKKQRFVKMVYF 116

[Close]

BLAST of Clc06G00420 vs. NCBI nr
Match: KYP64296.1 (ER-derived vesicles protein ERV14 [Cajanus cajan])

HSP 1 Score: 71.2 bits (173), Expect = 6.1e-09
Identity = 30/49 (61.22%), Postives = 42/49 (85.71%), Query Frame = 0


Query: 49  VSLPCLFFNVRLYIWKEHLADVTEIYNQIGCEKKQRFLKMIYFLILFVM 98
           +SLPCL++NVRLYI +EHLADVTEIYN++  EKK+R  K+ Y +++FV+
Sbjct: 211 ISLPCLYYNVRLYIKREHLADVTEIYNKLNWEKKRRLFKVAYLVVVFVI 259

[Close]

BLAST of Clc06G00420 vs. NCBI nr
Match: XP_020220108.1 (protein cornichon homolog 4 [Cajanus cajan] >XP_020220109.1 protein cornichon homolog 4 [Cajanus cajan] >XP_020220111.1 protein cornichon homolog 4 [Cajanus cajan])

HSP 1 Score: 71.2 bits (173), Expect = 6.1e-09
Identity = 30/49 (61.22%), Postives = 42/49 (85.71%), Query Frame = 0


Query: 49  VSLPCLFFNVRLYIWKEHLADVTEIYNQIGCEKKQRFLKMIYFLILFVM 98
           +SLPCL++NVRLYI +EHLADVTEIYN++  EKK+R  K+ Y +++FV+
Sbjct: 74  ISLPCLYYNVRLYIKREHLADVTEIYNKLNWEKKRRLFKVAYLVVVFVI 122

[Close]

BLAST of Clc06G00420 vs. ExPASy Swiss-Prot
Match: Q9SZ74 (Protein cornichon homolog 5 OS=Arabidopsis thaliana OX=3702 GN=At4g12090 PE=2 SV=2)

HSP 1 Score: 50.8 bits (120), Expect = 1.1e-05
Identity = 23/40 (57.50%), Postives = 32/40 (80.00%), Query Frame = 0


Query: 49  VSLPCLFFNVRLYIWKEHLADVTEIYNQIGCEKKQRFLKM 89
           +SLP LF+N+RLY+ +EHLADVTE+YN    E+K+R  K+
Sbjct: 74  LSLPHLFYNIRLYMKREHLADVTELYNTNKWEQKKRVYKI 113

[Close]

BLAST of Clc06G00420 vs. ExPASy Swiss-Prot
Match: Q3EDD7 (Probable protein cornichon homolog 2 OS=Arabidopsis thaliana OX=3702 GN=At1g12340 PE=2 SV=2)

HSP 1 Score: 48.1 bits (113), Expect = 7.3e-05
Identity = 20/43 (46.51%), Postives = 30/43 (69.77%), Query Frame = 0


Query: 51  LPCLFFNVRLYIWKEHLADVTEIYNQIGCEKKQRFLKMIYFLI 94
           LP L++N  LY  ++HL DVTEI+N +  EKK+R  K+ Y ++
Sbjct: 68  LPYLYYNFHLYSKRQHLVDVTEIFNLLNWEKKKRLFKLAYIVL 110

[Close]

BLAST of Clc06G00420 vs. ExPASy Swiss-Prot
Match: Q84W04 (Protein cornichon homolog 4 OS=Arabidopsis thaliana OX=3702 GN=At1g12390 PE=1 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 7.3e-05
Identity = 20/43 (46.51%), Postives = 30/43 (69.77%), Query Frame = 0


Query: 51  LPCLFFNVRLYIWKEHLADVTEIYNQIGCEKKQRFLKMIYFLI 94
           LP L++N  LY  ++HL DVTEI+N +  EKK+R  K+ Y ++
Sbjct: 76  LPYLYYNFHLYSKRQHLVDVTEIFNLLNWEKKKRLFKLAYIVL 118

[Close]

BLAST of Clc06G00420 vs. ExPASy Swiss-Prot
Match: Q8GWT5 (Protein cornichon homolog 3 OS=Arabidopsis thaliana OX=3702 GN=At1g62880 PE=2 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.2e-04
Identity = 25/60 (41.67%), Postives = 37/60 (61.67%), Query Frame = 0


Query: 37  LFIFQHPLVHVFVSLPC---LFFNVRLYIWKEHLADVTEIYNQIGCEKKQRFLKMIYFLI 94
           L +F     H F++L C   L++N  LY  K+HL DVTEI+N +  EKK+R  K+ Y ++
Sbjct: 59  LCVFYLVTGHWFMALLCVPYLYYNFHLYSRKQHLIDVTEIFNLLDWEKKKRLFKLAYIIL 118

[Close]

BLAST of Clc06G00420 vs. ExPASy Swiss-Prot
Match: Q9P6K6 (ER-derived vesicles protein erv14 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=erv14 PE=3 SV=2)

HSP 1 Score: 46.2 bits (108), Expect = 2.8e-04
Identity = 19/46 (41.30%), Postives = 30/46 (65.22%), Query Frame = 0


Query: 50  SLPCLFFNVRLYIWKEHLADVTEIYNQIGCEKKQRFLKMIYFLILF 96
           +LP L F+    I K H+ D TEI+ Q+G  K+  F+K+ ++LI+F
Sbjct: 77  NLPLLVFHANQVIHKTHILDATEIFRQLGRHKRDNFIKVTFYLIMF 122

[Close]

BLAST of Clc06G00420 vs. ExPASy TrEMBL
Match: A0A1S3CD35 (protein cornichon homolog 4-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103499030 PE=3 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 3.0e-14
Identity = 47/62 (75.81%), Postives = 51/62 (82.26%), Query Frame = 0


Query: 37  LFIFQHPLV-HVF---VSLPCLFFNVRLYIWKEHLADVTEIYNQIGCEKKQRFLKMIYFL 95
           +F F H L  H F   VSLPCL+FNVRLYI KEHLADVTEIYN IGCEKKQRFLK+IYFL
Sbjct: 58  VFSFVHLLARHWFMFLVSLPCLYFNVRLYIRKEHLADVTEIYNHIGCEKKQRFLKIIYFL 117

[Close]

BLAST of Clc06G00420 vs. ExPASy TrEMBL
Match: A0A1S3CBU0 (protein cornichon homolog 4-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103499030 PE=3 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 3.0e-14
Identity = 47/62 (75.81%), Postives = 51/62 (82.26%), Query Frame = 0


Query: 37  LFIFQHPLV-HVF---VSLPCLFFNVRLYIWKEHLADVTEIYNQIGCEKKQRFLKMIYFL 95
           +F F H L  H F   VSLPCL+FNVRLYI KEHLADVTEIYN IGCEKKQRFLK+IYFL
Sbjct: 58  VFSFVHLLARHWFMFLVSLPCLYFNVRLYIRKEHLADVTEIYNHIGCEKKQRFLKIIYFL 117

[Close]

BLAST of Clc06G00420 vs. ExPASy TrEMBL
Match: A0A6J1DF23 (protein cornichon homolog 4-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111020444 PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 3.4e-13
Identity = 45/63 (71.43%), Postives = 51/63 (80.95%), Query Frame = 0


Query: 36  ALFIFQHPLV-HVF---VSLPCLFFNVRLYIWKEHLADVTEIYNQIGCEKKQRFLKMIYF 95
           A+F F H L  H F   VSLPCL FN+RLY+ KEHLADVTEIYNQIG EKKQRF+KM+YF
Sbjct: 57  AVFCFVHLLARHWFMFLVSLPCLCFNIRLYVRKEHLADVTEIYNQIGWEKKQRFVKMVYF 116

[Close]

BLAST of Clc06G00420 vs. ExPASy TrEMBL
Match: A0A151TB91 (ER-derived vesicles protein ERV14 OS=Cajanus cajan OX=3821 GN=KK1_018888 PE=3 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 3.0e-09
Identity = 30/49 (61.22%), Postives = 42/49 (85.71%), Query Frame = 0


Query: 49  VSLPCLFFNVRLYIWKEHLADVTEIYNQIGCEKKQRFLKMIYFLILFVM 98
           +SLPCL++NVRLYI +EHLADVTEIYN++  EKK+R  K+ Y +++FV+
Sbjct: 211 ISLPCLYYNVRLYIKREHLADVTEIYNKLNWEKKRRLFKVAYLVVVFVI 259

[Close]

BLAST of Clc06G00420 vs. ExPASy TrEMBL
Match: A0A445DE24 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A04g018585 PE=3 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 5.0e-09
Identity = 31/57 (54.39%), Postives = 43/57 (75.44%), Query Frame = 0


Query: 49  VSLPCLFFNVRLYIWKEHLADVTEIYNQIGCEKKQRFLKMIYFLILFVMDDLERRNF 106
           + LPC+++NVRLYI KEHLADVTEIYN++  EKK R  K+ + ++LFV+  L  + F
Sbjct: 74  IGLPCMYYNVRLYIKKEHLADVTEIYNKLNWEKKMRLFKVGHSVLLFVLSVLRMKTF 130

[Close]

BLAST of Clc06G00420 vs. TAIR 10
Match: AT4G12090.1 (Cornichon family protein )

HSP 1 Score: 50.8 bits (120), Expect = 7.9e-07
Identity = 23/40 (57.50%), Postives = 32/40 (80.00%), Query Frame = 0


Query: 49  VSLPCLFFNVRLYIWKEHLADVTEIYNQIGCEKKQRFLKM 89
           +SLP LF+N+RLY+ +EHLADVTE+YN    E+K+R  K+
Sbjct: 74  LSLPHLFYNIRLYMKREHLADVTELYNTNKWEQKKRVYKI 113

[Close]

BLAST of Clc06G00420 vs. TAIR 10
Match: AT1G12340.1 (Cornichon family protein )

HSP 1 Score: 48.1 bits (113), Expect = 5.2e-06
Identity = 20/43 (46.51%), Postives = 30/43 (69.77%), Query Frame = 0


Query: 51  LPCLFFNVRLYIWKEHLADVTEIYNQIGCEKKQRFLKMIYFLI 94
           LP L++N  LY  ++HL DVTEI+N +  EKK+R  K+ Y ++
Sbjct: 68  LPYLYYNFHLYSKRQHLVDVTEIFNLLNWEKKKRLFKLAYIVL 110

[Close]

BLAST of Clc06G00420 vs. TAIR 10
Match: AT1G12390.1 (Cornichon family protein )

HSP 1 Score: 48.1 bits (113), Expect = 5.2e-06
Identity = 20/43 (46.51%), Postives = 30/43 (69.77%), Query Frame = 0


Query: 51  LPCLFFNVRLYIWKEHLADVTEIYNQIGCEKKQRFLKMIYFLI 94
           LP L++N  LY  ++HL DVTEI+N +  EKK+R  K+ Y ++
Sbjct: 76  LPYLYYNFHLYSKRQHLVDVTEIFNLLNWEKKKRLFKLAYIVL 118

[Close]

BLAST of Clc06G00420 vs. TAIR 10
Match: AT1G62880.1 (Cornichon family protein )

HSP 1 Score: 47.4 bits (111), Expect = 8.8e-06
Identity = 25/60 (41.67%), Postives = 37/60 (61.67%), Query Frame = 0


Query: 37  LFIFQHPLVHVFVSLPC---LFFNVRLYIWKEHLADVTEIYNQIGCEKKQRFLKMIYFLI 94
           L +F     H F++L C   L++N  LY  K+HL DVTEI+N +  EKK+R  K+ Y ++
Sbjct: 59  LCVFYLVTGHWFMALLCVPYLYYNFHLYSRKQHLIDVTEIFNLLDWEKKKRLFKLAYIIL 118

[Close]

BLAST of Clc06G00420 vs. TAIR 10
Match: AT3G12180.1 (Cornichon family protein )

HSP 1 Score: 42.7 bits (99), Expect = 2.2e-04
Identity = 21/61 (34.43%), Postives = 36/61 (59.02%), Query Frame = 0


Query: 37  LFIFQHPLVHVFVSLPCLFFNVRLYIWKEHLADVTEIYNQIGCEKKQRFLKMIYFLILFV 96
           LF+     V   V++P   ++  LY  + +L DVTE++  I  EKK R+ K+ +++ LF+
Sbjct: 63  LFLLTWHWVFFLVAVPVTVYHAMLYKERRYLIDVTEVFRGISFEKKLRYTKLGFYVFLFI 122

Query: 97  M 98
           M
Sbjct: 123 M 123

The following BLAST results are available for this feature:

BLAST of Clc06G00420 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008460129.1	6.3e-14	75.81	PREDICTED: protein cornichon homolog 4-like isoform X2 [Cucumis melo]	[more]
XP_008460127.1	6.3e-14	75.81	PREDICTED: protein cornichon homolog 4-like isoform X1 [Cucumis melo]	[more]
XP_022152825.1	7.0e-13	71.43	protein cornichon homolog 4-like isoform X1 [Momordica charantia] >XP_022152831....	[more]
KYP64296.1	6.1e-09	61.22	ER-derived vesicles protein ERV14 [Cajanus cajan]	[more]
XP_020220108.1	6.1e-09	61.22	protein cornichon homolog 4 [Cajanus cajan] >XP_020220109.1 protein cornichon ho...	[more]

BLAST of Clc06G00420 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SZ74	1.1e-05	57.50	Protein cornichon homolog 5 OS=Arabidopsis thaliana OX=3702 GN=At4g12090 PE=2 SV...	[more]
Q3EDD7	7.3e-05	46.51	Probable protein cornichon homolog 2 OS=Arabidopsis thaliana OX=3702 GN=At1g1234...	[more]
Q84W04	7.3e-05	46.51	Protein cornichon homolog 4 OS=Arabidopsis thaliana OX=3702 GN=At1g12390 PE=1 SV...	[more]
Q8GWT5	1.2e-04	41.67	Protein cornichon homolog 3 OS=Arabidopsis thaliana OX=3702 GN=At1g62880 PE=2 SV...	[more]
Q9P6K6	2.8e-04	41.30	ER-derived vesicles protein erv14 OS=Schizosaccharomyces pombe (strain 972 / ATC...	[more]

BLAST of Clc06G00420 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CD35	3.0e-14	75.81	protein cornichon homolog 4-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103499...	[more]
A0A1S3CBU0	3.0e-14	75.81	protein cornichon homolog 4-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103499...	[more]
A0A6J1DF23	3.4e-13	71.43	protein cornichon homolog 4-like isoform X1 OS=Momordica charantia OX=3673 GN=LO...	[more]
A0A151TB91	3.0e-09	61.22	ER-derived vesicles protein ERV14 OS=Cajanus cajan OX=3821 GN=KK1_018888 PE=3 SV...	[more]
A0A445DE24	5.0e-09	54.39	Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A04g018585 PE=3 SV=1	[more]

BLAST of Clc06G00420 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G12090.1	7.9e-07	57.50	Cornichon family protein	[more]
AT1G12340.1	5.2e-06	46.51	Cornichon family protein	[more]
AT1G12390.1	5.2e-06	46.51	Cornichon family protein	[more]
AT1G62880.1	8.8e-06	41.67	Cornichon family protein	[more]
AT3G12180.1	2.2e-04	34.43	Cornichon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003377	Cornichon	PFAM	PF03311	Cornichon	coord: 34..97 e-value: 3.5E-11 score: 43.5
None	No IPR available	PANTHER	PTHR12290	CORNICHON-RELATED	coord: 39..97
None	No IPR available	PANTHER	PTHR12290:SF22	CORNICHON FAMILY PROTEIN	coord: 39..97

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc06G00420.1	Clc06G00420.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
biological_process	GO:0016192	vesicle-mediated transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity