Clc06G00390 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc06G00390
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Calcium-binding EF-hand
Location	ClcChr06: 350722 .. 351646 (-)
RNA-Seq Expression	Clc06G00390
Synteny	Clc06G00390

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCAATCTCACATCTTCCTTCACTACCTTCTTCCATAGGAACATTATTACCTCAAAACCCTTCTTCAAGAAATCCCTAAACAACCAAAAGCTACCTTCTTTCACCACTTTTAACCACTTTGAGCTCCTCTTCAACCTCCTTGACTCCAATGGTGATGGAAAGATCTCCACGAAAGAGCTCCGTCGGTTTCTCTATCGCTTAGGTTATAAAAAGTTGAAAGCTAGAACAGAAGCTAAGGATATGGTGAAGGAAATGGATTCCGACCGTGATGGATGAATTTTTAGAGTGAGTATGACTTACAACATATTCAAGTTTAATCACTTTACTTCAACTTTTGACGTTAAAAGCATTAGTTAAAGGTTTTGTAACCATTAATATTGTTAGGGACAACAAACCTCCATATAACTTTATAATGTATTGTCCACTTTGGATATATTGCTCACATAGCTTTGTTTTCTATTTCACCAGAAAATATCATTGGAGTTAGTTATCTTTATTATTTATATACATGATCATCTCTTTATCTAGCTAATGTGGAACTTTTGTCGCATTTTCAATAAATATATTATATATATATGTATAAAATTTATGTTGAGGGTAAACTTACATATTCTTTTAAAAACAGAAATTGATAAAGTATTTCAAATGCACTCTTAATTGTTGTAAAGTCGTTCTAATAACAAAAATTTTGAACAGGGTTTTGAGGGAGGAGGAAGAAGAAGTAGTTCTTAGGGAAGCTTTTTTGATATTTGATGGTGACAAGAATGGATTGATTTGTGCTGAGGAACTAAGGAGAACATTGAGCAAACTTGGATGGACAAAATGTGGGCTCAAAGAATGTAAAAGGATGATTGGAGTGGATAAAGATGGCGATGGGTTTGTGAATTTTCAAGATTTTCGGCTGATGATGACACAAAAATGA

mRNA sequence

ATGTTCAATCTCACATCTTCCTTCACTACCTTCTTCCATAGGAACATTATTACCTCAAAACCCTTCTTCAAGAAATCCCTAAACAACCAAAAGCTACCTTCTTTCACCACTTTTAACCACTTTGAGCTCCTCTTCAACCTCCTTGACTCCAATGGTGATGGAAAGATCTCCACGAAAGAGCTCCGTCGGAAATGGATTCCGACCGTGATGGATGAATTTTTAGAGGTTTTGAGGGAGGAGGAAGAAGAAGTAGTTCTTAGGGAAGCTTTTTTGATATTTGATGGTGACAAGAATGGATTGATTTGTGCTGAGGAACTAAGGAGAACATTGAGCAAACTTGGATGGACAAAATGTGGGCTCAAAGAATGTAAAAGGATGATTGGAGTGGATAAAGATGGCGATGGGTTTGTGAATTTTCAAGATTTTCGGCTGATGATGACACAAAAATGA

Coding sequence (CDS)

ATGTTCAATCTCACATCTTCCTTCACTACCTTCTTCCATAGGAACATTATTACCTCAAAACCCTTCTTCAAGAAATCCCTAAACAACCAAAAGCTACCTTCTTTCACCACTTTTAACCACTTTGAGCTCCTCTTCAACCTCCTTGACTCCAATGGTGATGGAAAGATCTCCACGAAAGAGCTCCGTCGGAAATGGATTCCGACCGTGATGGATGAATTTTTAGAGGTTTTGAGGGAGGAGGAAGAAGAAGTAGTTCTTAGGGAAGCTTTTTTGATATTTGATGGTGACAAGAATGGATTGATTTGTGCTGAGGAACTAAGGAGAACATTGAGCAAACTTGGATGGACAAAATGTGGGCTCAAAGAATGTAAAAGGATGATTGGAGTGGATAAAGATGGCGATGGGTTTGTGAATTTTCAAGATTTTCGGCTGATGATGACACAAAAATGA

Protein sequence

MFNLTSSFTTFFHRNIITSKPFFKKSLNNQKLPSFTTFNHFELLFNLLDSNGDGKISTKELRRKWIPTVMDEFLEVLREEEEEVVLREAFLIFDGDKNGLICAEELRRTLSKLGWTKCGLKECKRMIGVDKDGDGFVNFQDFRLMMTQK

Homology

[Close]

BLAST of Clc06G00390 vs. NCBI nr
Match: XP_008460131.1 (PREDICTED: calmodulin-like protein 7 [Cucumis melo])

HSP 1 Score: 221.5 bits (563), Expect = 4.9e-54
Identity = 124/178 (69.66%), Postives = 136/178 (76.40%), Query Frame = 0


Query: 1   MFNLTSS-FTTFFHRNIITSKPFFKKSLNNQKLPSFTTFNHFELLFNLLDSNGDGKISTK 60
           M NLTSS F+TFFHRN ITSKPFF+KSLNNQKLPSFTTFNHF+LLFN+LDS GDGKISTK
Sbjct: 1   MLNLTSSLFSTFFHRN-ITSKPFFQKSLNNQKLPSFTTFNHFQLLFNILDSGGDGKISTK 60

Query: 61  ELR--------RKWIPTV------------------MDEFLEVLRE-EEEEVVLREAFLI 120
           EL         +K   T+                  MDEFLEVL++ EEEE +LREAFLI
Sbjct: 61  ELSQFLYRLGYKKLKATMEAEEMVKEMDSDRDGFIEMDEFLEVLQKGEEEEEILREAFLI 120

Query: 121 FDGDKNGLICAEELRRTLSKLGWTKCGLKECKRMI-GVDKDGDGFVNFQDFRLMMTQK 150
           FDGDKNGLICAEEL+RT  K GWTKC LK+CK+MI GVD DGDGFVNFQDFRLMMTQK
Sbjct: 121 FDGDKNGLICAEELKRTFRKFGWTKCDLKQCKKMIEGVDHDGDGFVNFQDFRLMMTQK 177

[Close]

BLAST of Clc06G00390 vs. NCBI nr
Match: XP_004153117.1 (calmodulin-beta [Cucumis sativus] >KGN46235.1 hypothetical protein Csa_005220 [Cucumis sativus])

HSP 1 Score: 221.1 bits (562), Expect = 6.5e-54
Identity = 124/178 (69.66%), Postives = 138/178 (77.53%), Query Frame = 0


Query: 1   MFNLTSS-FTTFFHRNIITSKPFFKKSLNNQKLPSFTTFNHFELLFNLLDSNGDGKISTK 60
           MFNLTSS F TFFHRN I+SKPFF+KSLNNQKLPSFTTFNHF+LLFNLLDS+GDGKISTK
Sbjct: 1   MFNLTSSLFPTFFHRN-ISSKPFFQKSLNNQKLPSFTTFNHFQLLFNLLDSDGDGKISTK 60

Query: 61  ELR--------RKWIPTV------------------MDEFLEVLRE-EEEEVVLREAFLI 120
           EL         +K   T+                  MDEFLEVL++ EEEE +LREAFLI
Sbjct: 61  ELSQFLYRLGYKKLKATMEAEEMVKEMDSDRDGFIEMDEFLEVLQKGEEEEEILREAFLI 120

Query: 121 FDGDKNGLICAEELRRTLSKLGWTKCGLKECKRMI-GVDKDGDGFVNFQDFRLMMTQK 150
           FDGDKNGLICAE+L+RTLSK GW KC LK+CK+MI GVD DGDG+VNFQDFRLMMTQK
Sbjct: 121 FDGDKNGLICAEKLKRTLSKFGWQKCDLKQCKKMIEGVDHDGDGYVNFQDFRLMMTQK 177

[Close]

BLAST of Clc06G00390 vs. NCBI nr
Match: XP_012083557.1 (probable calcium-binding protein CML27 [Jatropha curcas] >KDP28741.1 hypothetical protein JCGZ_14512 [Jatropha curcas])

HSP 1 Score: 119.0 bits (297), Expect = 3.5e-23
Identity = 78/179 (43.58%), Postives = 102/179 (56.98%), Query Frame = 0


Query: 7   SFTT---FFHRNIITSKPFFKKSLNNQKL-----PSFTTF---NHFELLFNLLDSNGDGK 66
           SFTT      R +I      K++L++        PSF +    N F+ +FNL+D+NGDGK
Sbjct: 4   SFTTCLSSLRRRVIAKLTKHKRNLSSSTFDFSDTPSFASMEIPNQFKQVFNLIDANGDGK 63

Query: 67  IST-------------------------KELRRKWIPTV-MDEFLEVLREEEEEVVLREA 126
           IS+                         KEL R     V  DEF  +L   +EE  L +A
Sbjct: 64  ISSYDLIELLLCLGCDKSKAKAEAEGMVKELDRNGDGFVDFDEFFYILNNYDEEDYLMDA 123

Query: 127 FLIFDGDKNGLICAEELRRTLSKLGWTKCGLKECKRMI-GVDKDGDGFVNFQDFRLMMT 148
           F+IFD DKNGLI A+EL++ LS+LG+ KC LKEC+ MI GVDKDGDGFV+F++FR MMT
Sbjct: 124 FMIFDADKNGLISAKELQKVLSRLGFEKCSLKECRIMIKGVDKDGDGFVDFEEFRSMMT 182

[Close]

BLAST of Clc06G00390 vs. NCBI nr
Match: TXG62712.1 (hypothetical protein EZV62_009706 [Acer yangbiense])

HSP 1 Score: 111.7 bits (278), Expect = 5.5e-21
Identity = 70/159 (44.03%), Postives = 90/159 (56.60%), Query Frame = 0


Query: 23  FKKSLNNQKLPSFTTFNHFELLFNLLDSNGDGKISTKELRR------------------K 82
           F   +NN    +    N F+ +F ++DSNGDGKIST E+                    +
Sbjct: 39  FDLLVNNSSFAAMELSNQFKQVFKVIDSNGDGKISTLEISEVLLCLGGYDDKSKATKDAQ 98

Query: 83  WIPTVM----------DEFLEVL------REEEEEVVLREAFLIFDGDKNGLICAEELRR 142
            + T M          DEF++ +      +EE+ +  L +AFLIFD DKNGLI A+ELRR
Sbjct: 99  SMVTQMDYNGDGFIDLDEFMDAVHHVHGSKEEDCDNHLMDAFLIFDSDKNGLISAKELRR 158

Query: 143 TLSKLGWTKCGLKECKRMI-GVDKDGDGFVNFQDFRLMM 147
            L  LG +KC L ECKRMI GVDKDGDGFV+FQ+FR MM
Sbjct: 159 VLISLGSSKCSLHECKRMIKGVDKDGDGFVDFQEFRSMM 197

[Close]

BLAST of Clc06G00390 vs. NCBI nr
Match: OMO78596.1 (Calcium-binding EF-hand [Corchorus capsularis])

HSP 1 Score: 109.8 bits (273), Expect = 2.1e-20
Identity = 66/148 (44.59%), Postives = 83/148 (56.08%), Query Frame = 0


Query: 39  NHFELLFNLLDSNGDGKISTKELRRKWIP--------------------------TVMDE 98
           N F  +F ++D+NGDGKIS  EL    +                             +DE
Sbjct: 5   NQFRHVFKVIDANGDGKISPLELSEVLLCLGHEKSTASKAAEGMVKEMDFNGDGFIDLDE 64

Query: 99  FLEVLREEE------------EEVVLREAFLIFDGDKNGLICAEELRRTLSKLGWTKCGL 148
           F+ V+  +E            EE  L +AFLIFD DKNGLI A+ELR+ L  LG+TKC L
Sbjct: 65  FMHVVHSDEAICGSNGGGGGGEEDCLMDAFLIFDTDKNGLISAKELRKVLISLGFTKCSL 124

[Close]

BLAST of Clc06G00390 vs. ExPASy Swiss-Prot
Match: Q9C9U8 (Probable calcium-binding protein CML26 OS=Arabidopsis thaliana OX=3702 GN=CML26 PE=1 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 5.6e-16
Identity = 55/148 (37.16%), Postives = 80/148 (54.05%), Query Frame = 0


Query: 25  KSLNNQKLPSFTTFNHFELLFNLLDSNGDGKISTKEL-----------RRKWIPTVMD-- 84
           +S N    PS  T    + +F+  D+NGDGKIS  EL             + +  V+D  
Sbjct: 7   ESTNKSTTPS--TDMELKKVFDKFDANGDGKISVSELGNVFKSMGTSYTEEELNRVLDEI 66

Query: 85  -----------EFLEVLREEEEEVVLREAFLIFDGDKNGLICAEELRRTLSKLGWTKCGL 144
                      EF  + R     V +REAF ++D +KNGLI + E+ + L++LG T C +
Sbjct: 67  DIDCDGFINQEEFATICRSSSSAVEIREAFDLYDQNKNGLISSSEIHKVLNRLGMT-CSV 126

Query: 145 KECKRMIG-VDKDGDGFVNFQDFRLMMT 148
           ++C RMIG VD DGDG VNF++F+ MM+
Sbjct: 127 EDCVRMIGHVDTDGDGNVNFEEFQKMMS 151

[Close]

BLAST of Clc06G00390 vs. ExPASy Swiss-Prot
Match: Q9LE22 (Probable calcium-binding protein CML27 OS=Arabidopsis thaliana OX=3702 GN=CML27 PE=1 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.2e-15
Identity = 53/131 (40.46%), Postives = 72/131 (54.96%), Query Frame = 0


Query: 44  LFNLLDSNGDGKISTKEL--------------------------RRKWIPTVMDEFLEVL 103
           +F+  DSNGDGKIS  EL                          R  +I   +DEF  + 
Sbjct: 27  VFDQFDSNGDGKISVLELGGVFKAMGTSYTETELNRVLEEVDTDRDGYIN--LDEFSTLC 86

Query: 104 REEEEEVVLREAFLIFDGDKNGLICAEELRRTLSKLGWTKCGLKECKRMIG-VDKDGDGF 148
           R       +R+AF ++D DKNGLI A EL + L++LG + C +++C RMIG VD DGDG 
Sbjct: 87  RSSSSAAEIRDAFDLYDQDKNGLISASELHQVLNRLGMS-CSVEDCTRMIGPVDADGDGN 146

[Close]

BLAST of Clc06G00390 vs. ExPASy Swiss-Prot
Match: Q9FYK2 (Probable calcium-binding protein CML25 OS=Arabidopsis thaliana OX=3702 GN=CML25 PE=2 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.4e-14
Identity = 55/156 (35.26%), Postives = 85/156 (54.49%), Query Frame = 0


Query: 21  PFFKKSLNNQKLPSFTTFNHFELLFNLLDSNGDGKISTKEL---------------RRKW 80
           P+ +K+ + +     T     E +F   D NGDGKIS+KEL                 K 
Sbjct: 23  PYLQKARSGK-----TEIRELEAVFKKFDVNGDGKISSKELGAIMTSLGHEVPEEELEKA 82

Query: 81  IPTV---------MDEFLEVLRE--EEEEVV--LREAFLIFDGDKNGLICAEELRRTLSK 140
           I  +          +EF+E+  +  ++ +V+  L++AF ++D D NG I AEEL   L  
Sbjct: 83  ITEIDRKGDGYINFEEFVELNTKGMDQNDVLENLKDAFSVYDIDGNGSISAEELHEVLRS 142

Query: 141 LGWTKCGLKECKRMI-GVDKDGDGFVNFQDFRLMMT 148
           LG  +C + EC++MI GVDKDGDG ++F++F++MMT
Sbjct: 143 LG-DECSIAECRKMIGGVDKDGDGTIDFEEFKIMMT 172

[Close]

BLAST of Clc06G00390 vs. ExPASy Swiss-Prot
Match: Q9SS31 (Probable calcium-binding protein CML36 OS=Arabidopsis thaliana OX=3702 GN=CML36 PE=2 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.5e-13
Identity = 48/123 (39.02%), Postives = 69/123 (56.10%), Query Frame = 0


Query: 25  KSLNNQKLPSFTTFNHFELLFNLLDSNGDGKISTKELRRKWIPTVMDEFLEVLREEEEEV 84
           +SL ++  P   T     ++   +D +GDG I  +EL  + +       L+  R+  E  
Sbjct: 92  ESLLSRLGPDPLTEEEINVMLKEVDCDGDGTIRLEELASRVVS------LDPARDSTE-- 151

Query: 85  VLREAFLIFDGDKNGLICAEELRRTLSKLGWTKCGLKECKRMIG-VDKDGDGFVNFQDFR 144
            L+E F  FD D++GLI A+EL R  S +G  +C L +CKRMI  VD+DGDGFV F +F 
Sbjct: 152 -LKETFEFFDADRDGLISADELLRVFSTIGDERCTLDDCKRMIADVDEDGDGFVCFTEFS 205

Query: 145 LMM 147
            MM
Sbjct: 212 RMM 205

[Close]

BLAST of Clc06G00390 vs. ExPASy Swiss-Prot
Match: Q9SRR7 (Calmodulin-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=CML3 PE=2 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.6e-13
Identity = 48/102 (47.06%), Postives = 67/102 (65.69%), Query Frame = 0


Query: 48  LDSNGDGKISTKELRRKWIPTVMDEFLEVLREEEEEVVLREAFLIFDGDKNGLICAEELR 107
           +D NGDG +  +E    +  T+M+E     R+EEE+  +REAF +FD +++G I  EELR
Sbjct: 49  IDLNGDGYVDIEEFGGLY-QTIMEE-----RDEEED--MREAFNVFDQNRDGFITVEELR 108

Query: 108 RTLSKLGWTKCG--LKECKRMIG-VDKDGDGFVNFQDFRLMM 147
             L+ LG  K G  L++CKRMI  VD DGDG VNF++F+ MM
Sbjct: 109 SVLASLG-LKQGRTLEDCKRMISKVDVDGDGMVNFKEFKQMM 141

[Close]

BLAST of Clc06G00390 vs. ExPASy TrEMBL
Match: A0A1S3CBX8 (calmodulin-like protein 7 OS=Cucumis melo OX=3656 GN=LOC103499032 PE=4 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 2.4e-54
Identity = 124/178 (69.66%), Postives = 136/178 (76.40%), Query Frame = 0


Query: 1   MFNLTSS-FTTFFHRNIITSKPFFKKSLNNQKLPSFTTFNHFELLFNLLDSNGDGKISTK 60
           M NLTSS F+TFFHRN ITSKPFF+KSLNNQKLPSFTTFNHF+LLFN+LDS GDGKISTK
Sbjct: 1   MLNLTSSLFSTFFHRN-ITSKPFFQKSLNNQKLPSFTTFNHFQLLFNILDSGGDGKISTK 60

Query: 61  ELR--------RKWIPTV------------------MDEFLEVLRE-EEEEVVLREAFLI 120
           EL         +K   T+                  MDEFLEVL++ EEEE +LREAFLI
Sbjct: 61  ELSQFLYRLGYKKLKATMEAEEMVKEMDSDRDGFIEMDEFLEVLQKGEEEEEILREAFLI 120

Query: 121 FDGDKNGLICAEELRRTLSKLGWTKCGLKECKRMI-GVDKDGDGFVNFQDFRLMMTQK 150
           FDGDKNGLICAEEL+RT  K GWTKC LK+CK+MI GVD DGDGFVNFQDFRLMMTQK
Sbjct: 121 FDGDKNGLICAEELKRTFRKFGWTKCDLKQCKKMIEGVDHDGDGFVNFQDFRLMMTQK 177

[Close]

BLAST of Clc06G00390 vs. ExPASy TrEMBL
Match: A0A0A0K8Z4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G076830 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 3.1e-54
Identity = 124/178 (69.66%), Postives = 138/178 (77.53%), Query Frame = 0


Query: 1   MFNLTSS-FTTFFHRNIITSKPFFKKSLNNQKLPSFTTFNHFELLFNLLDSNGDGKISTK 60
           MFNLTSS F TFFHRN I+SKPFF+KSLNNQKLPSFTTFNHF+LLFNLLDS+GDGKISTK
Sbjct: 1   MFNLTSSLFPTFFHRN-ISSKPFFQKSLNNQKLPSFTTFNHFQLLFNLLDSDGDGKISTK 60

Query: 61  ELR--------RKWIPTV------------------MDEFLEVLRE-EEEEVVLREAFLI 120
           EL         +K   T+                  MDEFLEVL++ EEEE +LREAFLI
Sbjct: 61  ELSQFLYRLGYKKLKATMEAEEMVKEMDSDRDGFIEMDEFLEVLQKGEEEEEILREAFLI 120

Query: 121 FDGDKNGLICAEELRRTLSKLGWTKCGLKECKRMI-GVDKDGDGFVNFQDFRLMMTQK 150
           FDGDKNGLICAE+L+RTLSK GW KC LK+CK+MI GVD DGDG+VNFQDFRLMMTQK
Sbjct: 121 FDGDKNGLICAEKLKRTLSKFGWQKCDLKQCKKMIEGVDHDGDGYVNFQDFRLMMTQK 177

[Close]

BLAST of Clc06G00390 vs. ExPASy TrEMBL
Match: A0A067JXS4 (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_14512 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.7e-23
Identity = 78/179 (43.58%), Postives = 102/179 (56.98%), Query Frame = 0


Query: 7   SFTT---FFHRNIITSKPFFKKSLNNQKL-----PSFTTF---NHFELLFNLLDSNGDGK 66
           SFTT      R +I      K++L++        PSF +    N F+ +FNL+D+NGDGK
Sbjct: 4   SFTTCLSSLRRRVIAKLTKHKRNLSSSTFDFSDTPSFASMEIPNQFKQVFNLIDANGDGK 63

Query: 67  IST-------------------------KELRRKWIPTV-MDEFLEVLREEEEEVVLREA 126
           IS+                         KEL R     V  DEF  +L   +EE  L +A
Sbjct: 64  ISSYDLIELLLCLGCDKSKAKAEAEGMVKELDRNGDGFVDFDEFFYILNNYDEEDYLMDA 123

Query: 127 FLIFDGDKNGLICAEELRRTLSKLGWTKCGLKECKRMI-GVDKDGDGFVNFQDFRLMMT 148
           F+IFD DKNGLI A+EL++ LS+LG+ KC LKEC+ MI GVDKDGDGFV+F++FR MMT
Sbjct: 124 FMIFDADKNGLISAKELQKVLSRLGFEKCSLKECRIMIKGVDKDGDGFVDFEEFRSMMT 182

[Close]

BLAST of Clc06G00390 vs. ExPASy TrEMBL
Match: A0A5C7I2Q7 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_009706 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 2.7e-21
Identity = 70/159 (44.03%), Postives = 90/159 (56.60%), Query Frame = 0


Query: 23  FKKSLNNQKLPSFTTFNHFELLFNLLDSNGDGKISTKELRR------------------K 82
           F   +NN    +    N F+ +F ++DSNGDGKIST E+                    +
Sbjct: 39  FDLLVNNSSFAAMELSNQFKQVFKVIDSNGDGKISTLEISEVLLCLGGYDDKSKATKDAQ 98

Query: 83  WIPTVM----------DEFLEVL------REEEEEVVLREAFLIFDGDKNGLICAEELRR 142
            + T M          DEF++ +      +EE+ +  L +AFLIFD DKNGLI A+ELRR
Sbjct: 99  SMVTQMDYNGDGFIDLDEFMDAVHHVHGSKEEDCDNHLMDAFLIFDSDKNGLISAKELRR 158

Query: 143 TLSKLGWTKCGLKECKRMI-GVDKDGDGFVNFQDFRLMM 147
            L  LG +KC L ECKRMI GVDKDGDGFV+FQ+FR MM
Sbjct: 159 VLISLGSSKCSLHECKRMIKGVDKDGDGFVDFQEFRSMM 197

[Close]

BLAST of Clc06G00390 vs. ExPASy TrEMBL
Match: A0A1R3I7M2 (Calcium-binding EF-hand OS=Corchorus capsularis OX=210143 GN=CCACVL1_14273 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.0e-20
Identity = 66/148 (44.59%), Postives = 83/148 (56.08%), Query Frame = 0


Query: 39  NHFELLFNLLDSNGDGKISTKELRRKWIP--------------------------TVMDE 98
           N F  +F ++D+NGDGKIS  EL    +                             +DE
Sbjct: 5   NQFRHVFKVIDANGDGKISPLELSEVLLCLGHEKSTASKAAEGMVKEMDFNGDGFIDLDE 64

Query: 99  FLEVLREEE------------EEVVLREAFLIFDGDKNGLICAEELRRTLSKLGWTKCGL 148
           F+ V+  +E            EE  L +AFLIFD DKNGLI A+ELR+ L  LG+TKC L
Sbjct: 65  FMHVVHSDEAICGSNGGGGGGEEDCLMDAFLIFDTDKNGLISAKELRKVLISLGFTKCSL 124

[Close]

BLAST of Clc06G00390 vs. TAIR 10
Match: AT1G73630.1 (EF hand calcium-binding protein family )

HSP 1 Score: 85.5 bits (210), Expect = 3.9e-17
Identity = 55/148 (37.16%), Postives = 80/148 (54.05%), Query Frame = 0


Query: 25  KSLNNQKLPSFTTFNHFELLFNLLDSNGDGKISTKEL-----------RRKWIPTVMD-- 84
           +S N    PS  T    + +F+  D+NGDGKIS  EL             + +  V+D  
Sbjct: 7   ESTNKSTTPS--TDMELKKVFDKFDANGDGKISVSELGNVFKSMGTSYTEEELNRVLDEI 66

Query: 85  -----------EFLEVLREEEEEVVLREAFLIFDGDKNGLICAEELRRTLSKLGWTKCGL 144
                      EF  + R     V +REAF ++D +KNGLI + E+ + L++LG T C +
Sbjct: 67  DIDCDGFINQEEFATICRSSSSAVEIREAFDLYDQNKNGLISSSEIHKVLNRLGMT-CSV 126

Query: 145 KECKRMIG-VDKDGDGFVNFQDFRLMMT 148
           ++C RMIG VD DGDG VNF++F+ MM+
Sbjct: 127 EDCVRMIGHVDTDGDGNVNFEEFQKMMS 151

[Close]

BLAST of Clc06G00390 vs. TAIR 10
Match: AT1G18210.1 (Calcium-binding EF-hand family protein )

HSP 1 Score: 84.3 bits (207), Expect = 8.8e-17
Identity = 53/131 (40.46%), Postives = 72/131 (54.96%), Query Frame = 0


Query: 44  LFNLLDSNGDGKISTKEL--------------------------RRKWIPTVMDEFLEVL 103
           +F+  DSNGDGKIS  EL                          R  +I   +DEF  + 
Sbjct: 27  VFDQFDSNGDGKISVLELGGVFKAMGTSYTETELNRVLEEVDTDRDGYIN--LDEFSTLC 86

Query: 104 REEEEEVVLREAFLIFDGDKNGLICAEELRRTLSKLGWTKCGLKECKRMIG-VDKDGDGF 148
           R       +R+AF ++D DKNGLI A EL + L++LG + C +++C RMIG VD DGDG 
Sbjct: 87  RSSSSAAEIRDAFDLYDQDKNGLISASELHQVLNRLGMS-CSVEDCTRMIGPVDADGDGN 146

[Close]

BLAST of Clc06G00390 vs. TAIR 10
Match: AT1G18210.2 (Calcium-binding EF-hand family protein )

HSP 1 Score: 84.3 bits (207), Expect = 8.8e-17
Identity = 53/131 (40.46%), Postives = 72/131 (54.96%), Query Frame = 0


Query: 44  LFNLLDSNGDGKISTKEL--------------------------RRKWIPTVMDEFLEVL 103
           +F+  DSNGDGKIS  EL                          R  +I   +DEF  + 
Sbjct: 27  VFDQFDSNGDGKISVLELGGVFKAMGTSYTETELNRVLEEVDTDRDGYIN--LDEFSTLC 86

Query: 104 REEEEEVVLREAFLIFDGDKNGLICAEELRRTLSKLGWTKCGLKECKRMIG-VDKDGDGF 148
           R       +R+AF ++D DKNGLI A EL + L++LG + C +++C RMIG VD DGDG 
Sbjct: 87  RSSSSAAEIRDAFDLYDQDKNGLISASELHQVLNRLGMS-CSVEDCTRMIGPVDADGDGN 146

[Close]

BLAST of Clc06G00390 vs. TAIR 10
Match: AT1G24620.1 (EF hand calcium-binding protein family )

HSP 1 Score: 80.9 bits (198), Expect = 9.7e-16
Identity = 55/156 (35.26%), Postives = 85/156 (54.49%), Query Frame = 0


Query: 21  PFFKKSLNNQKLPSFTTFNHFELLFNLLDSNGDGKISTKEL---------------RRKW 80
           P+ +K+ + +     T     E +F   D NGDGKIS+KEL                 K 
Sbjct: 23  PYLQKARSGK-----TEIRELEAVFKKFDVNGDGKISSKELGAIMTSLGHEVPEEELEKA 82

Query: 81  IPTV---------MDEFLEVLRE--EEEEVV--LREAFLIFDGDKNGLICAEELRRTLSK 140
           I  +          +EF+E+  +  ++ +V+  L++AF ++D D NG I AEEL   L  
Sbjct: 83  ITEIDRKGDGYINFEEFVELNTKGMDQNDVLENLKDAFSVYDIDGNGSISAEELHEVLRS 142

Query: 141 LGWTKCGLKECKRMI-GVDKDGDGFVNFQDFRLMMT 148
           LG  +C + EC++MI GVDKDGDG ++F++F++MMT
Sbjct: 143 LG-DECSIAECRKMIGGVDKDGDGTIDFEEFKIMMT 172

[Close]

BLAST of Clc06G00390 vs. TAIR 10
Match: AT3G07490.1 (ARF-GAP domain 11 )

HSP 1 Score: 76.6 bits (187), Expect = 1.8e-14
Identity = 48/102 (47.06%), Postives = 67/102 (65.69%), Query Frame = 0


Query: 48  LDSNGDGKISTKELRRKWIPTVMDEFLEVLREEEEEVVLREAFLIFDGDKNGLICAEELR 107
           +D NGDG +  +E    +  T+M+E     R+EEE+  +REAF +FD +++G I  EELR
Sbjct: 49  IDLNGDGYVDIEEFGGLY-QTIMEE-----RDEEED--MREAFNVFDQNRDGFITVEELR 108

Query: 108 RTLSKLGWTKCG--LKECKRMIG-VDKDGDGFVNFQDFRLMM 147
             L+ LG  K G  L++CKRMI  VD DGDG VNF++F+ MM
Sbjct: 109 SVLASLG-LKQGRTLEDCKRMISKVDVDGDGMVNFKEFKQMM 141

The following BLAST results are available for this feature:

BLAST of Clc06G00390 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008460131.1	4.9e-54	69.66	PREDICTED: calmodulin-like protein 7 [Cucumis melo]	[more]
XP_004153117.1	6.5e-54	69.66	calmodulin-beta [Cucumis sativus] >KGN46235.1 hypothetical protein Csa_005220 [C...	[more]
XP_012083557.1	3.5e-23	43.58	probable calcium-binding protein CML27 [Jatropha curcas] >KDP28741.1 hypothetica...	[more]
TXG62712.1	5.5e-21	44.03	hypothetical protein EZV62_009706 [Acer yangbiense]	[more]
OMO78596.1	2.1e-20	44.59	Calcium-binding EF-hand [Corchorus capsularis]	[more]

BLAST of Clc06G00390 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C9U8	5.6e-16	37.16	Probable calcium-binding protein CML26 OS=Arabidopsis thaliana OX=3702 GN=CML26 ...	[more]
Q9LE22	1.2e-15	40.46	Probable calcium-binding protein CML27 OS=Arabidopsis thaliana OX=3702 GN=CML27 ...	[more]
Q9FYK2	1.4e-14	35.26	Probable calcium-binding protein CML25 OS=Arabidopsis thaliana OX=3702 GN=CML25 ...	[more]
Q9SS31	1.5e-13	39.02	Probable calcium-binding protein CML36 OS=Arabidopsis thaliana OX=3702 GN=CML36 ...	[more]
Q9SRR7	2.6e-13	47.06	Calmodulin-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=CML3 PE=2 SV=1	[more]

BLAST of Clc06G00390 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CBX8	2.4e-54	69.66	calmodulin-like protein 7 OS=Cucumis melo OX=3656 GN=LOC103499032 PE=4 SV=1	[more]
A0A0A0K8Z4	3.1e-54	69.66	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G076830 PE=4 SV=1	[more]
A0A067JXS4	1.7e-23	43.58	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_14512 PE=4 SV=1	[more]
A0A5C7I2Q7	2.7e-21	44.03	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_009706 PE=4 SV=1	[more]
A0A1R3I7M2	1.0e-20	44.59	Calcium-binding EF-hand OS=Corchorus capsularis OX=210143 GN=CCACVL1_14273 PE=4 ...	[more]

BLAST of Clc06G00390 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G73630.1	3.9e-17	37.16	EF hand calcium-binding protein family	[more]
AT1G18210.1	8.8e-17	40.46	Calcium-binding EF-hand family protein	[more]
AT1G18210.2	8.8e-17	40.46	Calcium-binding EF-hand family protein	[more]
AT1G24620.1	9.7e-16	35.26	EF hand calcium-binding protein family	[more]
AT3G07490.1	1.8e-14	47.06	ARF-GAP domain 11	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002048	EF-hand domain	SMART	SM00054	efh_1	coord: 122..149 e-value: 0.14 score: 21.3 coord: 85..113 e-value: 0.0018 score: 27.5 coord: 40..68 e-value: 1.0 score: 17.7
IPR002048	EF-hand domain	PFAM	PF13405	EF-hand_6	coord: 86..114 e-value: 4.9E-6 score: 25.9
IPR002048	EF-hand domain	PFAM	PF13202	EF-hand_5	coord: 44..63 e-value: 7.1E-6 score: 25.3 coord: 129..146 e-value: 0.014 score: 14.8
IPR002048	EF-hand domain	PROSITE	PS50222	EF_HAND_2	coord: 129..149 score: 10.524363
IPR002048	EF-hand domain	PROSITE	PS50222	EF_HAND_2	coord: 81..116 score: 12.644413
IPR002048	EF-hand domain	PROSITE	PS50222	EF_HAND_2	coord: 36..71 score: 10.496468
IPR002048	EF-hand domain	CDD	cd00051	EFh	coord: 89..147 e-value: 5.70663E-12 score: 55.6317
None	No IPR available	GENE3D	1.10.238.10		coord: 67..149 e-value: 3.7E-17 score: 64.3
None	No IPR available	GENE3D	1.10.238.10		coord: 39..65 e-value: 1.1E-5 score: 26.9
None	No IPR available	PANTHER	PTHR23050:SF382	CALCIUM-BINDING PROTEIN CML25-RELATED	coord: 80..148
None	No IPR available	PANTHER	PTHR23050	CALCIUM BINDING PROTEIN	coord: 80..148
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 49..61
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 94..106
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 130..142
IPR011992	EF-hand domain pair	SUPERFAMILY	47473	EF-hand	coord: 39..147

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc06G00390.1	Clc06G00390.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005509	calcium ion binding