Clc06G00280 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc06G00280
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	MADS-box protein SOC1-like
Location	ClcChr06: 253325 .. 264407 (-)
RNA-Seq Expression	Clc06G00280
Synteny	Clc06G00280

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAGAGGAAAGACGCAGATGAGGCTAATAGAGAACGCCACAAGCCGACAAGTCACCTTCTCCAAGAGGCGAAATGGTTTGATGAAAAAAGCTTTTGAGCTATCAGTTCTCTGTGATGCTGAAGTTGCTCTTATTATTTTCTCCCCTAGAGGAAAGCTTTACGAATTTGCTAGCTCAAGGTACTATTCAAACTCTAAATTTAATGGGGCCTCTCTCTTTTTGCTGTGAAATACAAATATACTTGCTTGTTGTGGTTTACTTTGTTTTTCTTATCCCTCTATTATTTGTACTAGTTTAAGTGATGGCTTGATCTGAATTTGAATCTCTTTGCTTGACTTTACTGGCAACTCTTGCAAATAGGGTTTGCTTGCTGTAAGTTAACTTTTTCAGTTAAATGAGTAAAAAAAACAAAAAGCACTAAAGAAGAAGAAAATTTGAACTGTCACATATGCTTCAAGTAGCATACAAATTTTGAGTATGAAAGTGATATATGAATGCAGTTAAATAGATGTTTTGATTTGATGGGAATGAATTTTCATGGAAAATAGTAAGTGATTTGATTTCAGATATATGGGATGGATTTATTTTTCAAAACCATACCCTTCTCTTTTTTTCCCTTTCTATGTCCAAACTGTTGGGATCAATGGAATTAAAATGACAATGTTCCTTTTTTAGCCATTACCCTAAGCCTGATTTTTGCTGTTGTTTTCAATGAAATTATTGGAAGAAGTGAAAAGGGTTTGTACTATATACTATATATAACCATAATATAAGTGTATATGCTCTCAAACACTGTGGTTTTACTGTTTGGTTTATATTAATTTATCAGTAGATTCCTTATATAGATTATGAACAGAAGCAAAAGTCTCCGCAATGGCTGCTCCTTTTTAGAAACTTATTTCTGTGAGTTTGTGGAATTATTTAATTCTTTTTAGTCACTTAGTTTTAAAAAAGTTTTTTTTTTCCCTTTTTCTCGTTTCATTTATTATGTTCTTAGACTATAAACACGGATTCATAAAATAGCGATTTAATGTCATGATAGCATTAATATTTACAATTTCTTAACTAGCTATAGCCATAAACCTTAGTGTTTTCCAAAGAAATGGTGTTACCAATATTCTTAATGATCATATAGTATTTCTGTCATTTGGCACTATTAATATTTCCATAAATGGCCTTTATTTCGTAATAATTATTTCTTCACTTGTAGCTTGTTATATTTCTTGGTTTATATCTTTATTATTACAACATTTAATAACGTTGCTAATAATTATTGAATGGTCTTGGATTTTTGTTCCAAGTTCTATAAGTTTTGTTTAGGTTTTCTTCATATGATGAAGAAGATTATTGTTGCATGCATGTAATATAGGAAAACTATCTAATCATTTAATTCAGGCTTGGGAACCAATAATATTTGCATGAGGTCACCTTTTGTAATTTAATAACATTCTGACTAACATTCTTCATATTTTTCTGTTTTTCCCATTTTTTTTTTTTGTATGGTAAGTTTAAAACTATTAAACATACTTTATCCAGTATGGTATTGATGGTTATTGGGCTAAGTTCGAGTGTGTGGAAAACTTATAGAATAATACATATCCTAAGGTAGATATACACTTTATTTTTGACTAATGATCTCAAAGACTTAAGTTTACAAAACGTACTTGGACTAGTAGGCTTATTTATATTAGTGGTTATAGAAATGCCTAATAAAACTAACTAGGGATGTTTCAAAAATAAAAAACGGTTGAAAATAATAACAAATATAGTAAAATTTTTCTTTCTATCTATGATAGACTATGATAGACATCTATCAGTTTACCAAGTAGACACGGGTAGATGTCTATCTGGATATATCGCAATTTATCACAGATAGTAAAATTTTGCTAGTTTATAAATAGTTTGATATTTTTTTTATTTCTAATAATTTTTTCACATAACTATTCAAGTTTTTTATTTGAAAAAAAAAAAAAAAAGAAAAATCTTATTGCAATTATTAGAGGGAGTGTTTGACTGAAATAATGGCTGAACTACTCAATTTGACATGTGCATCATCCTTTAAGTTTAGATAGCCTATCCTATCTAAGGACTGAGTTTTGTTGATAAGAAATTTTGTTTGAATTTTTTCAGATAAGATTTAGCAGACCTTTTTAGATATTCTCTGGAAAATCCTCTAACCCTAATCCTTTTTTAAAAAAAAAAATTTATTAACATTTTTATGATTTTGTGTAATAGTTTTTTTTTTTTTTAATTTTTTAAATTATTTATTAATATTTTTACTATAAATTTTGGAAACATATTTTCATCTTGTATTTTATTGCATGAATATTATTATTATTATTTAACTAATTTCGATAAAATATAACTTCGAGGGCTAAATTTTAGATTTATTGAAAGTAAAACTAAAATTGAACAAATTCCAAAATATAGAGACCAAAATAATATTTTAATCTTCTTTTAAAGGAGACTTTCACATTATTAGATTTACATAAGACATTTTTTGATAGCAATACTTGAGATACCTACAGATATTACATATGAAGTTGGAGAAATTCAAATTTGCGAATTTTTGGTTGAGAGTATATGTACAAGTTAGTTGAGTTATAGTTGGATTTGCCAACTTTAATTGCTCTTATTCTTTTGTAAAGGTGTGTGTTTTCAAAACTAATGACATATATATATCGAGCTGTTTCGTCGCTCCTCTCTCAAGTTTTTTTTTCTTTTTTTTTTTCCAATTATTATTAAATGTATGTTTTTTAGTTTCTAAAGTTTGAGTTTTCTTTAATCCTTGAGTTTTCATGACATGGTATTTAATGAGTTGGTAAATTTTAGAGGAGGTATTAGCTGCATTGAAGAAGAAAAGTTGCAAATTTTGTCTGAGTTCATATATATTTGGAGGCGAAATTGAAGTAGCTTGGTTTGTCAGCCAATTTTAACAATCAACAATCAGAATAAGTTTGCTTTCTTGATTAGAAAAATTTAACTCCTCTAAGTCATGATTGAAAATTTTAAAACATAAGGGACTAAATTGAATATATATATATATATTTTTTGAAAACATGGCATTGATCAAAGGAGATGTTTGACTTAGATTATTAAAAAATCTAAATTTGTGTAGTGTTAATTATAACCTTAAAATTAAAAGTAACCTAAAAATAACTTTAAACATTAATTATAATCTTCCCTTTAGTATCTTGCTAAAAACAACCTAAAAATTAAAAGGTAATATTAGTTATGCTGAAAGATATTTTATCTGTGAAAATAACCAATTAGAAGATGAAAGGAAAAAATTTGAAAAACAAACAAAACAGAAATAGCAATCAAAACTCCCAACATATTTTCACCAAAAAGATATCTTCCCATCAAAGCATTTCCTTTGTCTGATGGTGAGTTTCAACCATGAGATTTTCTAAAAGAATTCTATTCTTATAGTATAATCGTCTTTATCTAATTAATCATAATCATATATATTTATATACTTTAATTATTTTATAAATTGAATCATTAACATCTAATCATATAATTTTAAAGATGAAATTAGAGTTAGCACACCCAAACTTAAAAATGTTTCTAACTAGAACAATTTGAAACTAAAGTTAGAGGTTTCTTTTGCAAAGCTTGAAACCAATCACCTTTTTAACTTTTTACAATAATGGATAACTGCCCTTCTTATATTTTACCAAATCCATACAATATGCCTCTCTTTTTTGAAATGTGTTACAGTTATTTGACAATATAAATAAGTGTAATTTTGAGTTGGGGTTTGAGACATTTGATGTAGGTAAGAATTCAATTAATATACACTATAAGCTCCATACTGCACCCTTTAAATCTATGTTGCTTCTTATCAAAAAAGAAGAAGAAGAAGGATAGTTTTATGTGTTAGTTTATAAGTGTCAATAATAGTCTCGTGTCTCGAGTTTCTTGATGTTGATAAGTCATTTTAGTATCCCATCTCTGATATAAACTCATGAAACTTTAATTGATTTATCAAAGAGAATAATCATTAGCTGTCCCATTAGTTGACATGAGTTCTTACTCTTCAAATATTCTTTCATATCCATACACCTATAAGAGTGATGTGTAAAATCACTGCTTCTTCGGCCAAGTTTGACAAACACTAGCAACTGGAAAGGAGTTTTTAAGGATCAAAATCCCAAATCGATTACAAATGAGGAAATAAGAAAAATTTGAGAAATTTATAGATCTAAAAGACATTATACACAATAACACAAGTGATAATATCTCTATTAGGATTGCCACCGTTCAACTCAAAAACTTAATTTTTTGGGTTCATAGTTTCAAAGCAGGTAGTTGTGTTTAAATGCTTGTAATATCATTTTTTTTCCCAAATAATACTGATATTTATTTGTTGGACTGTCTACAAATATTCAATCATGCATGAGAAAGAAAGTGTTAAAGTATTGATAAAAAATTGAATTTATCATAACCCATAAACAGGATGAAGCTGATGTAGAGGAAGACACAACTTTCGAATCACACATTCAATTTATACTCTTTGATTTGTTTACACATTCTTATTGAAAAAACATGTGGTGACCCTAGGCTATTTGGCATCTATCCAAATATATATCAATATTAATCTCTTCATGAACTAATTTAATTTGTTTCATATCCTTTCCAAGGAAAAAGCCTAATTTTCTGCCACTTTTCTGCTCTCTGCTTCAGCATGCAGGCAACTATAGAGCGTTACCGAAAGCATGCAAAAACCAAGGATGCCCAGGATCCTCCATCTGTTAATAATGTTGTACAGGTTTTTTTCTTTCATTATCATCCCACTTTTTTTTTATTTTTTATATTTAATTAGAAACATATAATCCTCCTAATAATGTTGCATCAAGTAAAACCCATTAGTAAAGGCTAGAGACAACAAACCCACCAACATACCACCACAATGATATAATGATCATTCATAATTTTTGTGGCTTTGTTTTTGTTCAAACAAAAGTCTCATACTATTGGAAATAGTTGTCCTCATTTATATACTACAATATTTCGACCACCAAAGTCTCCTCAAATAGTCTTAACCAGGCCAACTTCTCTTCACACATTCTAAGGTGTGATATTGTCCATTTTGGACATAATCCTTGTGGCTTTGTTTTTTGTTCCACCCAAAAGGTCTCACACCATTGGAGATAGTTGTCTCTCACTTATATATCATGGATCTTCACCTTACCTAGCCAATGTAAGATTTTGGTCTCACTCCAAAAGCAAAGATTATGGCCAAGTATGAATGTTCTCGTCGGTGTTGTTTTTTTCAATTGTGTTTATTTAGTTGAATGGGCCTCTATGTACTTTGCCAATGTGCTTATGTTTTTTCTCGGGAGCTTGATTTTGCAGGTTTCCATGGATTAAGTGTGACGCGAATTACAGAGTTCAAACTTTGCAATATCATTTCTTCTACCGATTAGTATGTTAGAAGAGAAAAATGCGTAAATGACACAAGTGTGGAGAAAGTGATAATTTTATTCTACTAAACATGACTTTATATAGATTTATAGAAAATAATCATAGAATCTCAATGGTTAAGAAATCATAAATATTACTTAATGCTCATAACTTCTAACATAAATAAAACTCTCAAAGAACTCAAAAGTCACTAAGGTTACAAAACACCAAAAGTAACAAATAAAGTCTAATAACTCCCACCCCCCCCCCCCTTCCCGATTTGTTACCCCTAGTAAACTCTTCAGTTTGATGAAACTATCCAACTTGAGAGGTTTTGTGACAATGTCCACCGCTTGGTCTTGTGACTTGATATATTTGAGTTCCCTTCTTTCTTCGTAATGCAATCTCGAATGTAGTGAAATCGGGTATCAATGTGTTTGCTCCTTCCATGAAATATCAGATTTTTTACTAAGGAAATTGCCGATTTATTGTCAACAAAAATCTCCATTGGATCTTTCATTTGAAACTTCAACTCCTTCATTAAGTTTCTTAGTCAAATTGCATGACATACATATGAAGTTGTCGCGACGTACTCCGCCTAGCATGTTAATAATGTGACTATGGGTTGTTTCTTTGACATCCATGTGAACATCGTTCCACCAATAAAAAACACAAACCCCGTAGTGCTCTTCTGGTCATCCAAATCACTACTCCAATCACTATCACAATAACCAATAATATCAAAATTGCTAGAAGAGATATAAGAAAGACTATACCCAACCGTCCCTTTGATGTAGTGAAGTATCCTCTGCCATTTTACAATGCATTGTTGTTAGATCCTCCATAAATTGACAAATAATTCCAACCGAGTAAGAATATTCGGTCTTGCGCATGTCAAGTATTTAAACTTCCAACCAAGCTTTTGAAATATGCGGAATCTACCTTCTCTCCTCCATTTTGCTTGGTGATTTTGACTCCACATTCCATTGGTTTTCTAACCGGATTAGCATCATCCATATTGAACCTTTTGAGCATTTCTCTAGCATAGCCCTCTTGGGATATAAAAATTTCATCTTCACCTCGTTTGACCTTGATCCCAAGATAATAACTCATGAAACCAATGTCCATCATTTCAAACTCCTTTGTCATCTTCCTTTTAAACTCATCAAACATGCAAGGATTGTTTCCGATAAATACCAAATCGTCAACATACAAACAAATGATTAGTATGCTCCTTACATTCTGATGTATAGGGCATGCTCATAAGGACATTTCATATACTTCTCTCTAAAATACTTGTCAATCCTCGAATTTCATACTCATCGTGTTTGCTTCAAGCTCTGAAGAGTCTTCTTCAATAATTACCTTCCCATTCAAAGAATTGTGAAGGCAATAACCTTTGAACTTGCATCATAGCCGATGAATTTGAGTTTCTCGCTTCGATCATCAAGCTTGGTCCTTTTTTATTTCGACACATGAGCATATGCAATACTTCCAAACACCTTAAAGTAACCAATTTCGGGCTTTCTTCCATTCCATCCTTCTTCAGGTATCTTGTCAAGCACACTTTTGGTTAGTGCTCGATTTGTTAAATAGACCGCACAAGCTACAGCCTCCGCCCAAAATTCCCTCGACATCTTTTTCGTCTTTAACATGCTTCTTTCCATGTTCAAGATTATTCGATTCTTCCTTTCCGCCACGCCATTTTGTTGTGGTGTCTATGGCATTGTTAATAGATGTAGAATGCATTTTTCATTACAAAACTGTTTGAACTCATTTGATATGAATTCACCACCTCTATCGATTCTCATGGCCTTGATTGTAAGGTTGCTTTCATTCTCCATATGCGCCTAATTCTTTTCAACATCTCAAATACTTATGATTTTTCCTTCAAAAAGTACACCCTTGTTTTTCTAGAAAACTCATTAATAAAGAGAAGGAAGTACTTAATTTTACCATGAGACACTGATTTTATCACTCCACACACATTGGCATGGATGAGTTCTAGAGGCTTATTGGCTCTTGTCATAGACTCATTTGGAAAACTACTATGATGATGTTTTCCAAGTAGACACCCTTCACATACTTGGCTCAGCTTGTGAATGTGTGGCAAACCCCGCACCATCTTCTTTTTCGACAAGTCTTCTAGACTTCCAAAATTGAGGTCCCTGAACTGTAGATTTCAATAGCTAAGAAACATCCTCATCACACACCTTCAAGTATTTTGGAACATCGTACATATATTTAAAGGGAACATTTTTTTCATGATTATCTCTTAAATACAAACACTTGTTTTTCATTTGAACTACAAAACCTTTCTCTAACAATTGTCCTACACTTAATATATTGCATTTTTATATTGGGAATGTAATAAACATTTGTAATATATTGATTTTCTCTATTCTTTAAGCAAATGAGAATTTTACCTATTCTTTTGATGGTAGCCAAAGAATTGTCTCCAAAGGCAATATTGCCTTTTTCCATCTCATTCAACTCTACAAACATCTCGTAGTTCCCACGCATGTGATTTGAAGCTCTGTTGTCAAAATATCACTTGCTATAATCTTGAATCTCTTCTTCTCTGTTTGAAACCATGAATAAGGTCACATTCTCCTCTACATAATTGGACTGCCCTTGATGGGCTCTGGATGTGCCGGTGGTTGACTAGTCATGTTGCTTCCGATCAATCGACTCTCATTCAAACAAGTAACACTCATTCGCAAAATGTCCATATTTATTACAATTATAACATTTTACCTGAGATTTATTTCTCTCGGACCTTCCATCATGTCTTCCATGACCTCGACCTCCTCTTCCTCTTGAGCATTCATTTGAGTTTTGAAAAACGTCGATGTTAATTTCACCTCTTCCACCATGGCCTCGACCACCACGACCTCTTCCACGTCCACGATTATTTTCCTCCTTGATTTGAGTTGGCGAAGTTGTTCAATGGTCTCCGTTTACTCCATCTTTCTTTTTTTTCTCCTCATACATTTGTAATTAGCCTATAAATTGTTTAATCGTCGTGGTCTCAAGATCTTTTGTCTCCTCGATTTTCATGGCGATGATCTCAAACTTAGTATTTAGGCACTGTAGAACCTTTTCCATGACATGAACATTGGTGATTTCTTCATCGTTCCGTCTCCTTCATATGTGATGATTGTTGACAATAGCAATTACTTTTGTGTGATATTCTGCTATCACCTCCATCTCCTTCATATGTGATGATTCAAATTCACCACGTACTATTTTCACACGATCGGCTCCTCTATGAGTCAATTAAAGTTTGTCCCATACCTCCTTTGACGTCTTGGCATTGCAAATGGTCTCAAATGTGTCTTCGTTCACTAATTGGTACAAGATGTAGAGGGTCTTCTTGTCCTTCTTTCTTGTCCCTTTCGCACATCTCTTTGCACTTGATCGGCTCCAACTTCTGCCTCTTGGAAACCATTGTCCACGATCTCCCACATGTCTTGCGCTCCTAGTAACACTTTTATCTTGATGCTCCAATTGTCATATTTGAGCAATAAGCATCGGTAGTTGAAGCGAACTCATCACACCATTGGGCATTTTTCTCTCAAATTTATTGCAAACTCTGATACCACTTTGTTAGAAGAAAAAACGGCATGGATGACACAAGTGTGGAGAAAGTGATAATTCCATTCAACTAAACATGTCTTTATATAGACTTACAAAACATAATCATAAAATCTCAATGGTTAGGAAATCGTAAATATTACTGAATGCTCATAACTTCTAACACAAATAAAACTCCTAGATAACTCAAAAACCACTAAGGTTACAAAACACCCGAAGTCACAAATAAAGTTTAATGCTAAAATCTTTCATTTTCTCATTATTAATGAAACCTTTCATTTTCTCAACATAATATCCTTAATCCGTTTGTTGAGGTCTTAGGCTAATTTTTGTGTGCTCATAATTCGATTGATAAACTATAAAGATTAGTGCCATATTTGAGAAAAGTCAGAATCACATTTTTCATGTTCAATATCATTCAAGGGAATGTAGATGTAGTGATTTTTCAGATTTGAAAATGATTTTGAAATGGTTAAAATTACTTTTGTCGTGTTTAAAATTACTTCAAAACACATGTTTAATCATTTAAATTACATCTTAAACGCATTTTTCATATTATTAGAATTGATTTTGAATGATTAAAAGTATTTTATGAGTGATTTTGAAAATGACAATGATTTTGTCCATTTTAGAATTGAGTGGAGTGTTTGTCCCTAGTTTCGATGTTTTCAAGTGACTTATTATATTTTTGTTTGTTTCTAAAGAGAGTATGAATATAACCTGTTGCTGAAGTTCATGATTTAATTCGATGAAACTAAGGTTAAAATGAAGTATGTAGGTAAGTACATTTTTATGATACACATTGAATAATGTTTGCAGTTGGAGCATCTGAATCATGAAGAAGCAGCTAGCCTGATGAAGAAAATAGAGCAACTTGAAGTTTCAAAACGGTTAGAAAGGGGTTTACTTCTTTTTGTTATTGGTTATATATTGTAATGGAAGAATATGGGCTTGTCTTAAATATATTGATTTGAATGATATAGTAATAATATAAATTACAGGAAAATGTTGGGAGAAGATCTGGGATCTTGCTCCATGGATGAACTTCAACAACTTGAAAATCAGTTGGAGAAAAGTGTTTGCAAAATTAGAGCCAGAAAGGTTTTTTTATTCAGTCCCCTCTCTTTAGATATCTCTCTATTCATTTAATACTCTCTCTTAAACCACGTGTTGATTTTTCAGATTGAAGTGTTTGAAGAACAGATTAAACAACTAAGGCAAAAGGTGAAAAGATTCAGTTTAACTACTTTTCTTTATTTTTAAGGATTTTTATGGGGAAGAATTTTTTTTTTTTTTTTTTTTTTTCTTTTCATGATGGATGGTGCATTGTAATAAGCAATATGGTTGAAATGCAATGCAGGAGAAAGTCTTGCAAGATGAAAATGCTAAGCTACTTCAAAAGGTAAACTAATTTCTTAATTCATTTATGTGAATGATAAAAATTACTATTCAACTTTTAACGTAGAAATCTGTTAGAATTTTAGCTAAAAATTGGAACTCCAACATATTCTAAGTCATTGTCACACTCTTCAAGTCTTAATTTCCATCAAAAACAGATTTTTTTTTCTACTTCAAAGTTAGTTTTGAAACATTTACACGAACAATCAAACATAATTTCTAACTAATTCTTAAAAACTAGGAAAAAAAATTAATTTTATCCTTATATTCGCTATATACTTTAATAAACTTTAAAATAAGTCTTATATATACACACACAGAAGATTTAACAATAAGTAAGGTGTATGAAAAACATGAAACTAAATTTAGACATTAAAAAATATGCATTTGGAAATAAAACAAGTTTTAATCCACGTTTTATTAATATTATAGTAAACATAAAAAAGTAAAAATTGGTTTAAAAGAAAATAATTTATGTATGAGAAGAATTATTGTAAGTTTTGATTAAATATGACAGTGGGAAAGTGAGGGAGATGGAGGAGTAAATAATGAAGGAGAAAGAGGAGAGAAATTGTTAAACTATGCAGAAAGTAGCAGCCCAAGTTCTGAGGTGGAGACGGAATTGTTCATTGGGCCACCCGAAGCAAGGCCCAGAAGATTTCTTTCCCTTCACTGA

mRNA sequence

ATGGTGAGAGGAAAGACGCAGATGAGGCTAATAGAGAACGCCACAAGCCGACAAGTCACCTTCTCCAAGAGGCGAAATGGTTTGATGAAAAAAGCTTTTGAGCTATCAGTTCTCTGTGATGCTGAAGTTGCTCTTATTATTTTCTCCCCTAGAGGAAAGCTTTACGAATTTGCTAGCTCAAGCATGCAGGCAACTATAGAGCGTTACCGAAAGCATGCAAAAACCAAGGATGCCCAGGATCCTCCATCTGTTAATAATGTTGTACAGTTGGAGCATCTGAATCATGAAGAAGCAGCTAGCCTGATGAAGAAAATAGAGCAACTTGAAGTTTCAAAACGGAAAATGTTGGGAGAAGATCTGGGATCTTGCTCCATGGATGAACTTCAACAACTTGAAAATCAGTTGGAGAAAAGTGTTTGCAAAATTAGAGCCAGAAAGATTGAAGTGTTTGAAGAACAGATTAAACAACTAAGGCAAAAGGAGAAAGTCTTGCAAGATGAAAATGCTAAGCTACTTCAAAAGTGGGAAAGTGAGGGAGATGGAGGAGTAAATAATGAAGGAGAAAGAGGAGAGAAATTGTTAAACTATGCAGAAAGTAGCAGCCCAAGTTCTGAGGTGGAGACGGAATTGTTCATTGGGCCACCCGAAGCAAGGCCCAGAAGATTTCTTTCCCTTCACTGA

Coding sequence (CDS)

ATGGTGAGAGGAAAGACGCAGATGAGGCTAATAGAGAACGCCACAAGCCGACAAGTCACCTTCTCCAAGAGGCGAAATGGTTTGATGAAAAAAGCTTTTGAGCTATCAGTTCTCTGTGATGCTGAAGTTGCTCTTATTATTTTCTCCCCTAGAGGAAAGCTTTACGAATTTGCTAGCTCAAGCATGCAGGCAACTATAGAGCGTTACCGAAAGCATGCAAAAACCAAGGATGCCCAGGATCCTCCATCTGTTAATAATGTTGTACAGTTGGAGCATCTGAATCATGAAGAAGCAGCTAGCCTGATGAAGAAAATAGAGCAACTTGAAGTTTCAAAACGGAAAATGTTGGGAGAAGATCTGGGATCTTGCTCCATGGATGAACTTCAACAACTTGAAAATCAGTTGGAGAAAAGTGTTTGCAAAATTAGAGCCAGAAAGATTGAAGTGTTTGAAGAACAGATTAAACAACTAAGGCAAAAGGAGAAAGTCTTGCAAGATGAAAATGCTAAGCTACTTCAAAAGTGGGAAAGTGAGGGAGATGGAGGAGTAAATAATGAAGGAGAAAGAGGAGAGAAATTGTTAAACTATGCAGAAAGTAGCAGCCCAAGTTCTGAGGTGGAGACGGAATTGTTCATTGGGCCACCCGAAGCAAGGCCCAGAAGATTTCTTTCCCTTCACTGA

Protein sequence

MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFASSSMQATIERYRKHAKTKDAQDPPSVNNVVQLEHLNHEEAASLMKKIEQLEVSKRKMLGEDLGSCSMDELQQLENQLEKSVCKIRARKIEVFEEQIKQLRQKEKVLQDENAKLLQKWESEGDGGVNNEGERGEKLLNYAESSSPSSEVETELFIGPPEARPRRFLSLH

Homology

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BLAST of Clc06G00280 vs. NCBI nr
Match: XP_038877328.1 (MADS-box protein SOC1 isoform X2 [Benincasa hispida])

HSP 1 Score: 410.6 bits (1054), Expect = 8.7e-111
Identity = 214/226 (94.69%), Postives = 222/226 (98.23%), Query Frame = 0


Query: 1   MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFASS 60
           MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFASS
Sbjct: 1   MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFASS 60

Query: 61  SMQATIERYRKHAKTKDAQDPPSVNNVVQLEHLNHEEAASLMKKIEQLEVSKRKMLGEDL 120
           SMQ TIERYRKHAK K+A DPPSVNN+VQLEHLNHEEAASLMK IEQLEV+KRKMLGEDL
Sbjct: 61  SMQGTIERYRKHAKAKEALDPPSVNNIVQLEHLNHEEAASLMKNIEQLEVAKRKMLGEDL 120

Query: 121 GSCSMDELQQLENQLEKSVCKIRARKIEVFEEQIKQLRQKEKVLQDENAKLLQKWESEGD 180
           GSCS+DELQQLE+QLEKSVCKIRARKIEVFEEQIKQLRQKEK+LQDENAKLLQKWESEGD
Sbjct: 121 GSCSIDELQQLEHQLEKSVCKIRARKIEVFEEQIKQLRQKEKILQDENAKLLQKWESEGD 180

Query: 181 GGVNNEGERGEKLLNYAESSSPSSEVETELFIGPPEARPRRFLSLH 227
           GGVNNEGERGEK+LNYAESSSPSSEVETELFIGPPEA+PRRFLSLH
Sbjct: 181 GGVNNEGERGEKMLNYAESSSPSSEVETELFIGPPEAKPRRFLSLH 226

[Close]

BLAST of Clc06G00280 vs. NCBI nr
Match: XP_038877327.1 (MADS-box protein SOC1 isoform X1 [Benincasa hispida])

HSP 1 Score: 400.2 bits (1027), Expect = 1.2e-107
Identity = 214/242 (88.43%), Postives = 222/242 (91.74%), Query Frame = 0


Query: 1   MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFASS 60
           MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFASS
Sbjct: 1   MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFASS 60

Query: 61  SMQATIERYRKHAKTKDAQDPPSVNNVVQ----------------LEHLNHEEAASLMKK 120
           SMQ TIERYRKHAK K+A DPPSVNN+VQ                LEHLNHEEAASLMK 
Sbjct: 61  SMQGTIERYRKHAKAKEALDPPSVNNIVQLDFAGIHGLSVTRIKELEHLNHEEAASLMKN 120

Query: 121 IEQLEVSKRKMLGEDLGSCSMDELQQLENQLEKSVCKIRARKIEVFEEQIKQLRQKEKVL 180
           IEQLEV+KRKMLGEDLGSCS+DELQQLE+QLEKSVCKIRARKIEVFEEQIKQLRQKEK+L
Sbjct: 121 IEQLEVAKRKMLGEDLGSCSIDELQQLEHQLEKSVCKIRARKIEVFEEQIKQLRQKEKIL 180

Query: 181 QDENAKLLQKWESEGDGGVNNEGERGEKLLNYAESSSPSSEVETELFIGPPEARPRRFLS 227
           QDENAKLLQKWESEGDGGVNNEGERGEK+LNYAESSSPSSEVETELFIGPPEA+PRRFLS
Sbjct: 181 QDENAKLLQKWESEGDGGVNNEGERGEKMLNYAESSSPSSEVETELFIGPPEAKPRRFLS 240

[Close]

BLAST of Clc06G00280 vs. NCBI nr
Match: XP_004153376.1 (MADS-box protein SOC1 [Cucumis sativus] >XP_031743444.1 MADS-box protein SOC1 [Cucumis sativus] >KGN46229.2 hypothetical protein Csa_004838 [Cucumis sativus])

HSP 1 Score: 378.3 bits (970), Expect = 4.8e-101
Identity = 206/227 (90.75%), Postives = 215/227 (94.71%), Query Frame = 0


Query: 1   MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFASS 60
           MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFAS+
Sbjct: 1   MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFAST 60

Query: 61  SMQATIERYRKHAKTKDAQDPPSVNNVVQLEHLNHEEAASLMKKIEQLEVSKRKMLGEDL 120
           SMQATIERYRK AK K+A DPP VNN+VQLEHLNHEEAASL+KKIEQLEVSKRKMLGEDL
Sbjct: 61  SMQATIERYRKRAKAKEALDPPFVNNIVQLEHLNHEEAASLIKKIEQLEVSKRKMLGEDL 120

Query: 121 GSCSMDELQQLENQLEKSVCKIRARKIEVFEEQIKQLRQKEKVLQDENAKLLQKWESE-G 180
           GSCS+DELQQLE+QLEKSVCKIRARKIEVFEEQIKQL+QKEKVLQDENAKLLQKWESE G
Sbjct: 121 GSCSLDELQQLEHQLEKSVCKIRARKIEVFEEQIKQLKQKEKVLQDENAKLLQKWESEGG 180

Query: 181 DGGVNNEGERGEKLLNYAESSSPSSEVETELFIGPPEARPRRFLSLH 227
           DGGVNNEG  GEK+LNYAESSSPSSEVETEL IGP    PRRFLS+H
Sbjct: 181 DGGVNNEG--GEKMLNYAESSSPSSEVETELLIGP----PRRFLSIH 221

[Close]

BLAST of Clc06G00280 vs. NCBI nr
Match: XP_008460142.1 (PREDICTED: MADS-box protein SOC1-like [Cucumis melo])

HSP 1 Score: 377.1 bits (967), Expect = 1.1e-100
Identity = 207/227 (91.19%), Postives = 214/227 (94.27%), Query Frame = 0


Query: 1   MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFASS 60
           MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFASS
Sbjct: 1   MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFASS 60

Query: 61  SMQATIERYRKHAKTKDAQDPPSVNNVVQLEHLNHEEAASLMKKIEQLEVSKRKMLGEDL 120
           SMQATIERYRK AKTK+A DPP VNN+VQLEH NHEEAASL+KKIEQLEVSKRKMLGEDL
Sbjct: 61  SMQATIERYRKRAKTKEALDPPFVNNIVQLEHFNHEEAASLIKKIEQLEVSKRKMLGEDL 120

Query: 121 GSCSMDELQQLENQLEKSVCKIRARKIEVFEEQIKQLRQKEKVLQDENAKLLQKWESE-G 180
           GSCS+DELQQLE+QLEKSV KIRARKIEVFEEQIKQLRQKEKVLQDENAKLLQKWESE G
Sbjct: 121 GSCSLDELQQLEHQLEKSVSKIRARKIEVFEEQIKQLRQKEKVLQDENAKLLQKWESEGG 180

Query: 181 DGGVNNEGERGEKLLNYAESSSPSSEVETELFIGPPEARPRRFLSLH 227
           DGGVNNEG  GEK+LNYAESSSPSSEVETEL IGP    PRRFLS+H
Sbjct: 181 DGGVNNEG--GEKMLNYAESSSPSSEVETELLIGP----PRRFLSIH 221

[Close]

BLAST of Clc06G00280 vs. NCBI nr
Match: KAG6593700.1 (MADS-box protein SOC1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 370.2 bits (949), Expect = 1.3e-98
Identity = 198/226 (87.61%), Postives = 214/226 (94.69%), Query Frame = 0


Query: 1   MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFASS 60
           MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFA+S
Sbjct: 1   MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFANS 60

Query: 61  SMQATIERYRKHAKTKDAQDPPSVNNVVQLEHLNHEEAASLMKKIEQLEVSKRKMLGEDL 120
           SMQAT+ERYRKHAKTK+A DPPSVN+ +QLEHLNHEEAA+LMKKIEQLEVSKRKMLGEDL
Sbjct: 61  SMQATLERYRKHAKTKEALDPPSVND-IQLEHLNHEEAATLMKKIEQLEVSKRKMLGEDL 120

Query: 121 GSCSMDELQQLENQLEKSVCKIRARKIEVFEEQIKQLRQKEKVLQDENAKLLQKWESEGD 180
           GSCS+DELQQ+E QLEKSVCKIRARK+EVFEEQIKQL+ KEK+L+ ENAKLL+KWESE +
Sbjct: 121 GSCSIDELQQVELQLEKSVCKIRARKVEVFEEQIKQLKHKEKLLEAENAKLLEKWESEAE 180

Query: 181 GGVNNEGERGEKLLNYAESSSPSSEVETELFIGPPEARPRRFLSLH 227
           GGV  E ERGE L+NYAESSSPSSEVETELFIGPPE RPR FLSL+
Sbjct: 181 GGV-KEVERGENLMNYAESSSPSSEVETELFIGPPETRPRTFLSLN 224

[Close]

BLAST of Clc06G00280 vs. ExPASy Swiss-Prot
Match: O64645 (MADS-box protein SOC1 OS=Arabidopsis thaliana OX=3702 GN=SOC1 PE=1 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 2.4e-63
Identity = 145/219 (66.21%), Postives = 172/219 (78.54%), Query Frame = 0


Query: 1   MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFASS 60
           MVRGKTQM+ IENATSRQVTFSKRRNGL+KKAFELSVLCDAEV+LIIFSP+GKLYEFASS
Sbjct: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPKGKLYEFASS 60

Query: 61  SMQATIERYRKHAKTKDAQDPPSVNNVVQLEHLNHEEAASLMKKIEQLEVSKRKMLGEDL 120
           +MQ TI+RY +H K + +  P S  N   ++HL + EAA++MKKIEQLE SKRK+LGE +
Sbjct: 61  NMQDTIDRYLRHTKDRVSTKPVSEEN---MQHLKY-EAANMMKKIEQLEASKRKLLGEGI 120

Query: 121 GSCSMDELQQLENQLEKSVCKIRARKIEVFEEQIKQLRQKEKVLQDENAKLLQKW---ES 180
           G+CS++ELQQ+E QLEKSV  IRARK +VF+EQI+QL+QKEK L  EN KL +KW   ES
Sbjct: 121 GTCSIEELQQIEQQLEKSVKCIRARKTQVFKEQIEQLKQKEKALAAENEKLSEKWGSHES 180

Query: 181 EGDGGVNNEGE-RGEKLLNYAESSSPSSEVETELFIGPP 216
           E     N E   RG+      E SSPSSEVET+LFIG P
Sbjct: 181 EVWSNKNQESTGRGD------EESSPSSEVETQLFIGLP 209

[Close]

BLAST of Clc06G00280 vs. ExPASy Swiss-Prot
Match: O82743 (Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana OX=3702 GN=AGL19 PE=1 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 1.2e-51
Identity = 119/219 (54.34%), Postives = 158/219 (72.15%), Query Frame = 0


Query: 1   MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFASS 60
           MVRGKT+M+ IENATSRQVTFSKRRNGL+KKAFELSVLCDAEVAL+IFSPR KLYEF+SS
Sbjct: 1   MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALVIFSPRSKLYEFSSS 60

Query: 61  SMQATIERYRKHAKTKDAQDPPSVNNVVQLEHLNHEEAASLMKKIEQLEVSKRKMLGEDL 120
           S+ ATIERY++  K        + N+         +E + L KKIEQLE+SKRK+LGE +
Sbjct: 61  SIAATIERYQRRIKEIGNNHKRNDNS-----QQARDETSGLTKKIEQLEISKRKLLGEGI 120

Query: 121 GSCSMDELQQLENQLEKSVCKIRARKIEVFEEQIKQLRQKEKVLQDENAKLLQKWESEGD 180
            +CS++ELQQLENQL++S+ +IRA+K ++  E+I++L+ +E+ L  EN  L +KW   G 
Sbjct: 121 DACSIEELQQLENQLDRSLSRIRAKKYQLLREEIEKLKAEERNLVKENKDLKEKWLGMGT 180

Query: 181 GGVNNEGERGEKLLNYAE-SSSPSSEVETELFIGPPEAR 219
             + +     +  L+ +E +   + EVET LFIGPPE R
Sbjct: 181 ATIAS----SQSTLSSSEVNIDDNMEVETGLFIGPPETR 210

[Close]

BLAST of Clc06G00280 vs. ExPASy Swiss-Prot
Match: Q38838 (Agamous-like MADS-box protein AGL14 OS=Arabidopsis thaliana OX=3702 GN=AGL14 PE=1 SV=2)

HSP 1 Score: 193.0 bits (489), Expect = 3.7e-48
Identity = 117/219 (53.42%), Postives = 152/219 (69.41%), Query Frame = 0


Query: 1   MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEF-AS 60
           MVRGKT+M+ IENATSRQVTFSKRRNGL+KKAFELSVLCDAEVALIIFSPRGKLYEF +S
Sbjct: 1   MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSS 60

Query: 61  SSMQATIERYRKHAKTKDAQDPPSVNNVVQLEHLNHEEAASLMKKIEQLEVSKRKMLGED 120
           SS+  T+ERY+K       QD  S +        + +E   L +KIE LE+S RKM+GE 
Sbjct: 61  SSIPKTVERYQKR-----IQDLGSNHKRNDNSQQSKDETYGLARKIEHLEISTRKMMGEG 120

Query: 121 LGSCSMDELQQLENQLEKSVCKIRARKIEVFEEQIKQLRQKEKVLQDENAKLLQKWESEG 180
           L + S++ELQQLENQL++S+ KIRA+K ++  E+ ++L++KE+ L  EN  L++K E +G
Sbjct: 121 LDASSIEELQQLENQLDRSLMKIRAKKYQLLREETEKLKEKERNLIAENKMLMEKCEMQG 180

Query: 181 DGGVNNEGERGEKLLNYAESSSPSSEVETELFIGPPEAR 219
            G +           +  +      EV T+LFIGPPE R
Sbjct: 181 RGIIGRISSSSS--TSELDIDDNEMEVVTDLFIGPPETR 212

[Close]

BLAST of Clc06G00280 vs. ExPASy Swiss-Prot
Match: Q9FIS1 (MADS-box protein AGL42 OS=Arabidopsis thaliana OX=3702 GN=AGL42 PE=1 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 3.7e-48
Identity = 112/220 (50.91%), Postives = 160/220 (72.73%), Query Frame = 0


Query: 1   MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFASS 60
           MVRGK +M+ IENATSRQVTFSKRRNGL+KKA+ELSVLCDA+++LIIFS RG+LYEF+SS
Sbjct: 1   MVRGKIEMKKIENATSRQVTFSKRRNGLLKKAYELSVLCDAQLSLIIFSQRGRLYEFSSS 60

Query: 61  SMQATIERYRKHAKTKDAQDPPSVNNVVQLEHLNHEEAASLMKKIEQLEVSKRKMLGEDL 120
            MQ TIERYRK+ K  +  +  S  ++ QL+    +EA+ ++ KIE LE  KRK+LG+ +
Sbjct: 61  DMQKTIERYRKYTKDHETSNHDSQIHLQQLK----QEASHMITKIELLEFHKRKLLGQGI 120

Query: 121 GSCSMDELQQLENQLEKSVCKIRARKIEVFEEQIKQLRQKEKVLQDENAKLLQK-----W 180
            SCS++ELQ++++QL++S+ K+R RK ++F+EQ+++L+ KEK L +EN KL QK     W
Sbjct: 121 ASCSLEELQEIDSQLQRSLGKVRERKAQLFKEQLEKLKAKEKQLLEENVKLHQKNVINPW 180

Query: 181 ESEGDGGVNNEGERGEKLLNYAESSSPSSEVETELFIGPP 216
                G   ++ +   K+++       + EVET+LFIG P
Sbjct: 181 R----GSSTDQQQEKYKVIDL------NLEVETDLFIGLP 206

[Close]

BLAST of Clc06G00280 vs. ExPASy Swiss-Prot
Match: Q9XJ60 (MADS-box transcription factor 50 OS=Oryza sativa subsp. japonica OX=39947 GN=MADS50 PE=2 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 1.2e-46
Identity = 118/221 (53.39%), Postives = 153/221 (69.23%), Query Frame = 0


Query: 1   MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFASS 60
           MVRGKTQM+ IEN TSRQVTFSKRRNGL+KKAFELSVLCDAEVALI+FSPRGKLYEFAS+
Sbjct: 1   MVRGKTQMKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFASA 60

Query: 61  SMQATIERYRKHAKTKDAQDPPSVNNVVQ--LEHLNHEEAASLMKKIEQLEVSKRKMLGE 120
           S Q TIERYR + K          N  VQ  +E +   +A  L KK+E LE  KRK+LGE
Sbjct: 61  STQKTIERYRTYTKENIG------NKTVQQDIEQVK-ADADGLAKKLEALETYKRKLLGE 120

Query: 121 DLGSCSMDELQQLENQLEKSVCKIRARKIEVFEEQIKQLRQKEKVLQDENAKLLQKWESE 180
            L  CS++EL  LE +LE+S+  IR RK ++ EEQ+ +LR+KE  L+ +N +L +K +++
Sbjct: 121 KLDECSIEELHSLEVKLERSLISIRGRKTKLLEEQVAKLREKEMKLRKDNEELREKCKNQ 180

Query: 181 ----GDGGVNNEGERGEKLLNYAESSSPSSEVETELFIGPP 216
                   V  E E  ++ +N   +++ + +VETELFIG P
Sbjct: 181 PPLSAPLTVRAEDENPDRNIN---TTNDNMDVETELFIGLP 211

[Close]

BLAST of Clc06G00280 vs. ExPASy TrEMBL
Match: A0A1S3CD40 (MADS-box protein SOC1-like OS=Cucumis melo OX=3656 GN=LOC103499042 PE=4 SV=1)

HSP 1 Score: 377.1 bits (967), Expect = 5.2e-101
Identity = 207/227 (91.19%), Postives = 214/227 (94.27%), Query Frame = 0


Query: 1   MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFASS 60
           MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFASS
Sbjct: 1   MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFASS 60

Query: 61  SMQATIERYRKHAKTKDAQDPPSVNNVVQLEHLNHEEAASLMKKIEQLEVSKRKMLGEDL 120
           SMQATIERYRK AKTK+A DPP VNN+VQLEH NHEEAASL+KKIEQLEVSKRKMLGEDL
Sbjct: 61  SMQATIERYRKRAKTKEALDPPFVNNIVQLEHFNHEEAASLIKKIEQLEVSKRKMLGEDL 120

Query: 121 GSCSMDELQQLENQLEKSVCKIRARKIEVFEEQIKQLRQKEKVLQDENAKLLQKWESE-G 180
           GSCS+DELQQLE+QLEKSV KIRARKIEVFEEQIKQLRQKEKVLQDENAKLLQKWESE G
Sbjct: 121 GSCSLDELQQLEHQLEKSVSKIRARKIEVFEEQIKQLRQKEKVLQDENAKLLQKWESEGG 180

Query: 181 DGGVNNEGERGEKLLNYAESSSPSSEVETELFIGPPEARPRRFLSLH 227
           DGGVNNEG  GEK+LNYAESSSPSSEVETEL IGP    PRRFLS+H
Sbjct: 181 DGGVNNEG--GEKMLNYAESSSPSSEVETELLIGP----PRRFLSIH 221

[Close]

BLAST of Clc06G00280 vs. ExPASy TrEMBL
Match: A0A6J1HK51 (MADS-box protein SOC1 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111464292 PE=4 SV=1)

HSP 1 Score: 364.4 bits (934), Expect = 3.5e-97
Identity = 196/226 (86.73%), Postives = 212/226 (93.81%), Query Frame = 0


Query: 1   MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFASS 60
           MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFA+S
Sbjct: 1   MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFANS 60

Query: 61  SMQATIERYRKHAKTKDAQDPPSVNNVVQLEHLNHEEAASLMKKIEQLEVSKRKMLGEDL 120
           SMQAT+ERYRKHAKTK+A DPPSVN+ +QLEHLNHEEAA+LMKKIEQLEVSKRKMLGEDL
Sbjct: 61  SMQATLERYRKHAKTKEALDPPSVND-IQLEHLNHEEAATLMKKIEQLEVSKRKMLGEDL 120

Query: 121 GSCSMDELQQLENQLEKSVCKIRARKIEVFEEQIKQLRQKEKVLQDENAKLLQKWESEGD 180
           GSCS+DELQQ+E QLEKSVCKIRARK+EVFEEQIKQL+ KEK+L+ ENAKLL+KWESE +
Sbjct: 121 GSCSIDELQQVELQLEKSVCKIRARKVEVFEEQIKQLKHKEKLLEAENAKLLEKWESEAE 180

Query: 181 GGVNNEGERGEKLLNYAESSSPSSEVETELFIGPPEARPRRFLSLH 227
           G    E ERGE L+NYAESSSPSSEVETELFIGPPE RPR FLSL+
Sbjct: 181 G--VKEVERGENLMNYAESSSPSSEVETELFIGPPETRPRTFLSLN 223

[Close]

BLAST of Clc06G00280 vs. ExPASy TrEMBL
Match: A0A6J1KBW9 (MADS-box protein SOC1 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111494194 PE=4 SV=1)

HSP 1 Score: 361.3 bits (926), Expect = 2.9e-96
Identity = 192/226 (84.96%), Postives = 212/226 (93.81%), Query Frame = 0


Query: 1   MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFASS 60
           MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFA+S
Sbjct: 1   MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFANS 60

Query: 61  SMQATIERYRKHAKTKDAQDPPSVNNVVQLEHLNHEEAASLMKKIEQLEVSKRKMLGEDL 120
           SMQAT+ERYRKHAKTK+A +PPSV++ +QLEHLNHE AA+LMKKIEQLEVSKRKMLGEDL
Sbjct: 61  SMQATLERYRKHAKTKEALEPPSVSD-IQLEHLNHEAAATLMKKIEQLEVSKRKMLGEDL 120

Query: 121 GSCSMDELQQLENQLEKSVCKIRARKIEVFEEQIKQLRQKEKVLQDENAKLLQKWESEGD 180
           GSCS+DELQ++E+QLEKSVCKIRARK+EVFEEQIKQL+ KE +L+ ENAKLL+KWESE +
Sbjct: 121 GSCSIDELQEVEHQLEKSVCKIRARKVEVFEEQIKQLKHKENLLEAENAKLLEKWESEAE 180

Query: 181 GGVNNEGERGEKLLNYAESSSPSSEVETELFIGPPEARPRRFLSLH 227
           GGV  E ERGE L+NY ESSSPSSEVETELFIGPPE RPR FLSL+
Sbjct: 181 GGV-KEVERGENLMNYTESSSPSSEVETELFIGPPETRPRTFLSLN 224

[Close]

BLAST of Clc06G00280 vs. ExPASy TrEMBL
Match: A0A6J1HMG1 (MADS-box protein SOC1 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111464292 PE=4 SV=1)

HSP 1 Score: 355.1 bits (910), Expect = 2.1e-94
Identity = 193/226 (85.40%), Postives = 207/226 (91.59%), Query Frame = 0


Query: 1   MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFASS 60
           MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFA+S
Sbjct: 1   MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFANS 60

Query: 61  SMQATIERYRKHAKTKDAQDPPSVNNVVQLEHLNHEEAASLMKKIEQLEVSKRKMLGEDL 120
           SMQAT+ERYRKHAKTK+A DPPS      LEHLNHEEAA+LMKKIEQLEVSKRKMLGEDL
Sbjct: 61  SMQATLERYRKHAKTKEALDPPS------LEHLNHEEAATLMKKIEQLEVSKRKMLGEDL 120

Query: 121 GSCSMDELQQLENQLEKSVCKIRARKIEVFEEQIKQLRQKEKVLQDENAKLLQKWESEGD 180
           GSCS+DELQQ+E QLEKSVCKIRARK+EVFEEQIKQL+ KEK+L+ ENAKLL+KWESE +
Sbjct: 121 GSCSIDELQQVELQLEKSVCKIRARKVEVFEEQIKQLKHKEKLLEAENAKLLEKWESEAE 180

Query: 181 GGVNNEGERGEKLLNYAESSSPSSEVETELFIGPPEARPRRFLSLH 227
           G    E ERGE L+NYAESSSPSSEVETELFIGPPE RPR FLSL+
Sbjct: 181 G--VKEVERGENLMNYAESSSPSSEVETELFIGPPETRPRTFLSLN 218

[Close]

BLAST of Clc06G00280 vs. ExPASy TrEMBL
Match: A0A6J1KKV3 (MADS-box protein SOC1 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111494194 PE=4 SV=1)

HSP 1 Score: 354.0 bits (907), Expect = 4.7e-94
Identity = 190/226 (84.07%), Postives = 207/226 (91.59%), Query Frame = 0


Query: 1   MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFASS 60
           MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFA+S
Sbjct: 1   MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFANS 60

Query: 61  SMQATIERYRKHAKTKDAQDPPSVNNVVQLEHLNHEEAASLMKKIEQLEVSKRKMLGEDL 120
           SMQAT+ERYRKHAKTK+A +PPS      LEHLNHE AA+LMKKIEQLEVSKRKMLGEDL
Sbjct: 61  SMQATLERYRKHAKTKEALEPPS------LEHLNHEAAATLMKKIEQLEVSKRKMLGEDL 120

Query: 121 GSCSMDELQQLENQLEKSVCKIRARKIEVFEEQIKQLRQKEKVLQDENAKLLQKWESEGD 180
           GSCS+DELQ++E+QLEKSVCKIRARK+EVFEEQIKQL+ KE +L+ ENAKLL+KWESE +
Sbjct: 121 GSCSIDELQEVEHQLEKSVCKIRARKVEVFEEQIKQLKHKENLLEAENAKLLEKWESEAE 180

Query: 181 GGVNNEGERGEKLLNYAESSSPSSEVETELFIGPPEARPRRFLSLH 227
           GGV  E ERGE L+NY ESSSPSSEVETELFIGPPE RPR FLSL+
Sbjct: 181 GGV-KEVERGENLMNYTESSSPSSEVETELFIGPPETRPRTFLSLN 219

[Close]

BLAST of Clc06G00280 vs. TAIR 10
Match: AT2G45660.1 (AGAMOUS-like 20 )

HSP 1 Score: 243.4 bits (620), Expect = 1.7e-64
Identity = 145/219 (66.21%), Postives = 172/219 (78.54%), Query Frame = 0


Query: 1   MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFASS 60
           MVRGKTQM+ IENATSRQVTFSKRRNGL+KKAFELSVLCDAEV+LIIFSP+GKLYEFASS
Sbjct: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPKGKLYEFASS 60

Query: 61  SMQATIERYRKHAKTKDAQDPPSVNNVVQLEHLNHEEAASLMKKIEQLEVSKRKMLGEDL 120
           +MQ TI+RY +H K + +  P S  N   ++HL + EAA++MKKIEQLE SKRK+LGE +
Sbjct: 61  NMQDTIDRYLRHTKDRVSTKPVSEEN---MQHLKY-EAANMMKKIEQLEASKRKLLGEGI 120

Query: 121 GSCSMDELQQLENQLEKSVCKIRARKIEVFEEQIKQLRQKEKVLQDENAKLLQKW---ES 180
           G+CS++ELQQ+E QLEKSV  IRARK +VF+EQI+QL+QKEK L  EN KL +KW   ES
Sbjct: 121 GTCSIEELQQIEQQLEKSVKCIRARKTQVFKEQIEQLKQKEKALAAENEKLSEKWGSHES 180

Query: 181 EGDGGVNNEGE-RGEKLLNYAESSSPSSEVETELFIGPP 216
           E     N E   RG+      E SSPSSEVET+LFIG P
Sbjct: 181 EVWSNKNQESTGRGD------EESSPSSEVETQLFIGLP 209

[Close]

BLAST of Clc06G00280 vs. TAIR 10
Match: AT4G22950.1 (AGAMOUS-like 19 )

HSP 1 Score: 204.5 bits (519), Expect = 8.8e-53
Identity = 119/219 (54.34%), Postives = 158/219 (72.15%), Query Frame = 0


Query: 1   MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFASS 60
           MVRGKT+M+ IENATSRQVTFSKRRNGL+KKAFELSVLCDAEVAL+IFSPR KLYEF+SS
Sbjct: 1   MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALVIFSPRSKLYEFSSS 60

Query: 61  SMQATIERYRKHAKTKDAQDPPSVNNVVQLEHLNHEEAASLMKKIEQLEVSKRKMLGEDL 120
           S+ ATIERY++  K        + N+         +E + L KKIEQLE+SKRK+LGE +
Sbjct: 61  SIAATIERYQRRIKEIGNNHKRNDNS-----QQARDETSGLTKKIEQLEISKRKLLGEGI 120

Query: 121 GSCSMDELQQLENQLEKSVCKIRARKIEVFEEQIKQLRQKEKVLQDENAKLLQKWESEGD 180
            +CS++ELQQLENQL++S+ +IRA+K ++  E+I++L+ +E+ L  EN  L +KW   G 
Sbjct: 121 DACSIEELQQLENQLDRSLSRIRAKKYQLLREEIEKLKAEERNLVKENKDLKEKWLGMGT 180

Query: 181 GGVNNEGERGEKLLNYAE-SSSPSSEVETELFIGPPEAR 219
             + +     +  L+ +E +   + EVET LFIGPPE R
Sbjct: 181 ATIAS----SQSTLSSSEVNIDDNMEVETGLFIGPPETR 210

[Close]

BLAST of Clc06G00280 vs. TAIR 10
Match: AT4G11880.1 (AGAMOUS-like 14 )

HSP 1 Score: 193.0 bits (489), Expect = 2.7e-49
Identity = 117/219 (53.42%), Postives = 152/219 (69.41%), Query Frame = 0


Query: 1   MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEF-AS 60
           MVRGKT+M+ IENATSRQVTFSKRRNGL+KKAFELSVLCDAEVALIIFSPRGKLYEF +S
Sbjct: 1   MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSS 60

Query: 61  SSMQATIERYRKHAKTKDAQDPPSVNNVVQLEHLNHEEAASLMKKIEQLEVSKRKMLGED 120
           SS+  T+ERY+K       QD  S +        + +E   L +KIE LE+S RKM+GE 
Sbjct: 61  SSIPKTVERYQKR-----IQDLGSNHKRNDNSQQSKDETYGLARKIEHLEISTRKMMGEG 120

Query: 121 LGSCSMDELQQLENQLEKSVCKIRARKIEVFEEQIKQLRQKEKVLQDENAKLLQKWESEG 180
           L + S++ELQQLENQL++S+ KIRA+K ++  E+ ++L++KE+ L  EN  L++K E +G
Sbjct: 121 LDASSIEELQQLENQLDRSLMKIRAKKYQLLREETEKLKEKERNLIAENKMLMEKCEMQG 180

Query: 181 DGGVNNEGERGEKLLNYAESSSPSSEVETELFIGPPEAR 219
            G +           +  +      EV T+LFIGPPE R
Sbjct: 181 RGIIGRISSSSS--TSELDIDDNEMEVVTDLFIGPPETR 212

[Close]

BLAST of Clc06G00280 vs. TAIR 10
Match: AT5G62165.1 (AGAMOUS-like 42 )

HSP 1 Score: 193.0 bits (489), Expect = 2.7e-49
Identity = 112/220 (50.91%), Postives = 160/220 (72.73%), Query Frame = 0


Query: 1   MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFASS 60
           MVRGK +M+ IENATSRQVTFSKRRNGL+KKA+ELSVLCDA+++LIIFS RG+LYEF+SS
Sbjct: 1   MVRGKIEMKKIENATSRQVTFSKRRNGLLKKAYELSVLCDAQLSLIIFSQRGRLYEFSSS 60

Query: 61  SMQATIERYRKHAKTKDAQDPPSVNNVVQLEHLNHEEAASLMKKIEQLEVSKRKMLGEDL 120
            MQ TIERYRK+ K  +  +  S  ++ QL+    +EA+ ++ KIE LE  KRK+LG+ +
Sbjct: 61  DMQKTIERYRKYTKDHETSNHDSQIHLQQLK----QEASHMITKIELLEFHKRKLLGQGI 120

Query: 121 GSCSMDELQQLENQLEKSVCKIRARKIEVFEEQIKQLRQKEKVLQDENAKLLQK-----W 180
            SCS++ELQ++++QL++S+ K+R RK ++F+EQ+++L+ KEK L +EN KL QK     W
Sbjct: 121 ASCSLEELQEIDSQLQRSLGKVRERKAQLFKEQLEKLKAKEKQLLEENVKLHQKNVINPW 180

Query: 181 ESEGDGGVNNEGERGEKLLNYAESSSPSSEVETELFIGPP 216
                G   ++ +   K+++       + EVET+LFIG P
Sbjct: 181 R----GSSTDQQQEKYKVIDL------NLEVETDLFIGLP 206

[Close]

BLAST of Clc06G00280 vs. TAIR 10
Match: AT5G62165.2 (AGAMOUS-like 42 )

HSP 1 Score: 193.0 bits (489), Expect = 2.7e-49
Identity = 112/220 (50.91%), Postives = 160/220 (72.73%), Query Frame = 0


Query: 1   MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFASS 60
           MVRGK +M+ IENATSRQVTFSKRRNGL+KKA+ELSVLCDA+++LIIFS RG+LYEF+SS
Sbjct: 1   MVRGKIEMKKIENATSRQVTFSKRRNGLLKKAYELSVLCDAQLSLIIFSQRGRLYEFSSS 60

Query: 61  SMQATIERYRKHAKTKDAQDPPSVNNVVQLEHLNHEEAASLMKKIEQLEVSKRKMLGEDL 120
            MQ TIERYRK+ K  +  +  S  ++ QL+    +EA+ ++ KIE LE  KRK+LG+ +
Sbjct: 61  DMQKTIERYRKYTKDHETSNHDSQIHLQQLK----QEASHMITKIELLEFHKRKLLGQGI 120

Query: 121 GSCSMDELQQLENQLEKSVCKIRARKIEVFEEQIKQLRQKEKVLQDENAKLLQK-----W 180
            SCS++ELQ++++QL++S+ K+R RK ++F+EQ+++L+ KEK L +EN KL QK     W
Sbjct: 121 ASCSLEELQEIDSQLQRSLGKVRERKAQLFKEQLEKLKAKEKQLLEENVKLHQKNVINPW 180

Query: 181 ESEGDGGVNNEGERGEKLLNYAESSSPSSEVETELFIGPP 216
                G   ++ +   K+++       + EVET+LFIG P
Sbjct: 181 R----GSSTDQQQEKYKVIDL------NLEVETDLFIGLP 206

The following BLAST results are available for this feature:

BLAST of Clc06G00280 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038877328.1	8.7e-111	94.69	MADS-box protein SOC1 isoform X2 [Benincasa hispida]	[more]
XP_038877327.1	1.2e-107	88.43	MADS-box protein SOC1 isoform X1 [Benincasa hispida]	[more]
XP_004153376.1	4.8e-101	90.75	MADS-box protein SOC1 [Cucumis sativus] >XP_031743444.1 MADS-box protein SOC1 [C...	[more]
XP_008460142.1	1.1e-100	91.19	PREDICTED: MADS-box protein SOC1-like [Cucumis melo]	[more]
KAG6593700.1	1.3e-98	87.61	MADS-box protein SOC1, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Clc06G00280 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O64645	2.4e-63	66.21	MADS-box protein SOC1 OS=Arabidopsis thaliana OX=3702 GN=SOC1 PE=1 SV=1	[more]
O82743	1.2e-51	54.34	Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana OX=3702 GN=AGL19 PE=...	[more]
Q38838	3.7e-48	53.42	Agamous-like MADS-box protein AGL14 OS=Arabidopsis thaliana OX=3702 GN=AGL14 PE=...	[more]
Q9FIS1	3.7e-48	50.91	MADS-box protein AGL42 OS=Arabidopsis thaliana OX=3702 GN=AGL42 PE=1 SV=1	[more]
Q9XJ60	1.2e-46	53.39	MADS-box transcription factor 50 OS=Oryza sativa subsp. japonica OX=39947 GN=MAD...	[more]

BLAST of Clc06G00280 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CD40	5.2e-101	91.19	MADS-box protein SOC1-like OS=Cucumis melo OX=3656 GN=LOC103499042 PE=4 SV=1	[more]
A0A6J1HK51	3.5e-97	86.73	MADS-box protein SOC1 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111464292 P...	[more]
A0A6J1KBW9	2.9e-96	84.96	MADS-box protein SOC1 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111494194 PE=...	[more]
A0A6J1HMG1	2.1e-94	85.40	MADS-box protein SOC1 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111464292 P...	[more]
A0A6J1KKV3	4.7e-94	84.07	MADS-box protein SOC1 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111494194 PE=...	[more]

BLAST of Clc06G00280 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G45660.1	1.7e-64	66.21	AGAMOUS-like 20	[more]
AT4G22950.1	8.8e-53	54.34	AGAMOUS-like 19	[more]
AT4G11880.1	2.7e-49	53.42	AGAMOUS-like 14	[more]
AT5G62165.1	2.7e-49	50.91	AGAMOUS-like 42	[more]
AT5G62165.2	2.7e-49	50.91	AGAMOUS-like 42	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 98..118
None	No IPR available	COILS	Coil	Coil	coord: 128..174
None	No IPR available	PANTHER	PTHR11945	MADS BOX PROTEIN	coord: 1..216
None	No IPR available	PANTHER	PTHR11945:SF341	MADS-BOX PROTEIN SOC1	coord: 1..216
IPR002100	Transcription factor, MADS-box	PRINTS	PR00404	MADSDOMAIN	coord: 3..23 score: 59.41 coord: 23..38 score: 80.69 coord: 38..59 score: 68.47
IPR002100	Transcription factor, MADS-box	SMART	SM00432	madsneu2	coord: 1..60 e-value: 1.4E-40 score: 150.9
IPR002100	Transcription factor, MADS-box	PFAM	PF00319	SRF-TF	coord: 11..57 e-value: 9.0E-27 score: 92.4
IPR002100	Transcription factor, MADS-box	PROSITE	PS00350	MADS_BOX_1	coord: 3..57
IPR002100	Transcription factor, MADS-box	PROSITE	PS50066	MADS_BOX_2	coord: 1..61 score: 30.992022
IPR036879	Transcription factor, MADS-box superfamily	GENE3D	3.40.1810.10		coord: 14..93 e-value: 4.7E-31 score: 108.7
IPR036879	Transcription factor, MADS-box superfamily	SUPERFAMILY	55455	SRF-like	coord: 3..80
IPR002487	Transcription factor, K-box	PFAM	PF01486	K-box	coord: 95..175 e-value: 1.7E-25 score: 89.0
IPR002487	Transcription factor, K-box	PROSITE	PS51297	K_BOX	coord: 91..181 score: 15.335287
IPR033896	MADS MEF2-like	CDD	cd00265	MADS_MEF2_like	coord: 3..72 e-value: 1.96426E-43 score: 138.839

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc06G00280.2	Clc06G00280.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0000977	RNA polymerase II transcription regulatory region sequence-specific DNA binding