Clc06G00150 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc06G00150
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	LysM domain-containing protein
Location	ClcChr06: 150743 .. 151051 (+)
RNA-Seq Expression	Clc06G00150
Synteny	Clc06G00150

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGATACATCTCAGGCTGGTGTCTCCCATGGCTTCTTGCTACTCTGTTTTCATAATAAGTGTGATGGTGGTGATCATAGTGGTGGCCTCTGCAGAAGCAGAATCCAAGCCTTGCGACGACATCTACATCGTCAAAGAAGGCGAGACACTGCACACAATCAGCGCCAAGTGCAACGATCCTTTCATTGTTGACCACAATCCACAGATTCAAGACTCAGATGATGTTTTCCCAGGACTCCTCATCCAAATTACCCCTACTCCCATCAACTCCAGGAAGTTACTTTTCAGCTATCTACCCCCAATATAA

mRNA sequence

ATGATGATACATCTCAGGCTGGTGTCTCCCATGGCTTCTTGCTACTCTGTTTTCATAATAAGTGTGATGGTGGTGATCATAGTGGTGGCCTCTGCAGAAGCAGAATCCAAGCCTTGCGACGACATCTACATCGTCAAAGAAGGCGAGACACTGCACACAATCAGCGCCAAGTGCAACGATCCTTTCATTGTTGACCACAATCCACAGATTCAAGACTCAGATGATGTTTTCCCAGGACTCCTCATCCAAATTACCCCTACTCCCATCAACTCCAGGAAGTTACTTTTCAGCTATCTACCCCCAATATAA

Coding sequence (CDS)

ATGATGATACATCTCAGGCTGGTGTCTCCCATGGCTTCTTGCTACTCTGTTTTCATAATAAGTGTGATGGTGGTGATCATAGTGGTGGCCTCTGCAGAAGCAGAATCCAAGCCTTGCGACGACATCTACATCGTCAAAGAAGGCGAGACACTGCACACAATCAGCGCCAAGTGCAACGATCCTTTCATTGTTGACCACAATCCACAGATTCAAGACTCAGATGATGTTTTCCCAGGACTCCTCATCCAAATTACCCCTACTCCCATCAACTCCAGGAAGTTACTTTTCAGCTATCTACCCCCAATATAA

Protein sequence

MMIHLRLVSPMASCYSVFIISVMVVIIVVASAEAESKPCDDIYIVKEGETLHTISAKCNDPFIVDHNPQIQDSDDVFPGLLIQITPTPINSRKLLFSYLPPI

Homology

[Close]

BLAST of Clc06G00150 vs. NCBI nr
Match: KGN46208.1 (hypothetical protein Csa_005039 [Cucumis sativus])

HSP 1 Score: 131.0 bits (328), Expect = 6.0e-27
Identity = 70/85 (82.35%), Postives = 77/85 (90.59%), Query Frame = 0


Query: 11 MASCYSVFIISVMVVIIVVASAEAESKPCDDIYIVKEGETLHTISAKCNDPFIVDHNPQI 70
          MAS +SVF ++VM +IIVVAS  AES+PCDDIY+VKEGETLHTISAKC DPFIVD+NP I
Sbjct: 1  MASYFSVF-VTVMALIIVVAS--AESRPCDDIYVVKEGETLHTISAKCGDPFIVDNNPHI 60

Query: 71 QDSDDVFPGLLIQITPTPINSRKLL 96
          QDSDDVFPGLLIQITPT INSRKLL
Sbjct: 61 QDSDDVFPGLLIQITPTLINSRKLL 82

[Close]

BLAST of Clc06G00150 vs. NCBI nr
Match: KAA0040027.1 (hypothetical protein E6C27_scaffold122G003130 [Cucumis melo var. makuwa] >TYK24474.1 hypothetical protein E5676_scaffold266G00150 [Cucumis melo var. makuwa])

HSP 1 Score: 129.4 bits (324), Expect = 1.8e-26
Identity = 70/85 (82.35%), Postives = 77/85 (90.59%), Query Frame = 0


Query: 11 MASCYSVFIISVMVVIIVVASAEAESKPCDDIYIVKEGETLHTISAKCNDPFIVDHNPQI 70
          MAS +SVF I+VM +I+VVAS  AESKPC+DIY+VKEGETLHTISAKC DPFIVD+NP I
Sbjct: 1  MASYFSVF-ITVMALIMVVAS--AESKPCNDIYVVKEGETLHTISAKCRDPFIVDNNPHI 60

Query: 71 QDSDDVFPGLLIQITPTPINSRKLL 96
          QDSDDVFPGLLIQITPT INSRKLL
Sbjct: 61 QDSDDVFPGLLIQITPTLINSRKLL 82

[Close]

BLAST of Clc06G00150 vs. NCBI nr
Match: XP_023006696.1 (uncharacterized protein LOC111499354 [Cucurbita maxima])

HSP 1 Score: 119.8 bits (299), Expect = 1.4e-23
Identity = 62/91 (68.13%), Postives = 76/91 (83.52%), Query Frame = 0


Query: 9   SPMA---SCYSVFIISVMVVIIVVASAEAESKPCDDIYIVKEGETLHTISAKCNDPFIVD 68
           SPMA   SCYSVFI   ++++     A A+S PCDDIY+V+EGE+LH+ISAKC+DPFIVD
Sbjct: 39  SPMASSISCYSVFIFMALMLL-----ASAQSGPCDDIYLVREGESLHSISAKCDDPFIVD 98

Query: 69  HNPQIQDSDDVFPGLLIQITPTPINSRKLLF 97
           +NPQIQDSDDVFPGLLI+ITP+ +NSRKL F
Sbjct: 99  YNPQIQDSDDVFPGLLIKITPS-LNSRKLFF 123

[Close]

BLAST of Clc06G00150 vs. NCBI nr
Match: KAG6574776.1 (hypothetical protein SDJN03_25415, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 118.6 bits (296), Expect = 3.1e-23
Identity = 62/91 (68.13%), Postives = 77/91 (84.62%), Query Frame = 0


Query: 9   SPMA---SCYSVFIISVMVVIIVVASAEAESKPCDDIYIVKEGETLHTISAKCNDPFIVD 68
           SPMA   SC SVFI+  ++++     A A+S PCDDIY+V+EGE+LH+ISAKC+DPFIVD
Sbjct: 39  SPMASSTSCCSVFILMALMLL-----ASAQSGPCDDIYLVREGESLHSISAKCDDPFIVD 98

Query: 69  HNPQIQDSDDVFPGLLIQITPTPINSRKLLF 97
           +NPQIQDSDDVFPGLLI+ITP+ +NSRKLLF
Sbjct: 99  YNPQIQDSDDVFPGLLIKITPS-LNSRKLLF 123

[Close]

BLAST of Clc06G00150 vs. NCBI nr
Match: XP_022959284.1 (uncharacterized protein LOC111460313 [Cucurbita moschata])

HSP 1 Score: 117.9 bits (294), Expect = 5.3e-23
Identity = 62/91 (68.13%), Postives = 76/91 (83.52%), Query Frame = 0


Query: 9   SPMA---SCYSVFIISVMVVIIVVASAEAESKPCDDIYIVKEGETLHTISAKCNDPFIVD 68
           SPMA   SC SVFI   ++++     A A+S PCDDIY+V+EGE+LH+ISAKC+DPFIVD
Sbjct: 39  SPMASSTSCCSVFIFMALMLL-----ASAQSGPCDDIYLVREGESLHSISAKCDDPFIVD 98

Query: 69  HNPQIQDSDDVFPGLLIQITPTPINSRKLLF 97
           +NPQIQDSDDVFPGLLI+ITP+ +NSRKLLF
Sbjct: 99  YNPQIQDSDDVFPGLLIKITPS-LNSRKLLF 123

[Close]

BLAST of Clc06G00150 vs. ExPASy TrEMBL
Match: A0A0A0K9P3 (LysM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G074605 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.9e-27
Identity = 70/85 (82.35%), Postives = 77/85 (90.59%), Query Frame = 0


Query: 11 MASCYSVFIISVMVVIIVVASAEAESKPCDDIYIVKEGETLHTISAKCNDPFIVDHNPQI 70
          MAS +SVF ++VM +IIVVAS  AES+PCDDIY+VKEGETLHTISAKC DPFIVD+NP I
Sbjct: 1  MASYFSVF-VTVMALIIVVAS--AESRPCDDIYVVKEGETLHTISAKCGDPFIVDNNPHI 60

Query: 71 QDSDDVFPGLLIQITPTPINSRKLL 96
          QDSDDVFPGLLIQITPT INSRKLL
Sbjct: 61 QDSDDVFPGLLIQITPTLINSRKLL 82

[Close]

BLAST of Clc06G00150 vs. ExPASy TrEMBL
Match: A0A5D3DLK6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00150 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 8.5e-27
Identity = 70/85 (82.35%), Postives = 77/85 (90.59%), Query Frame = 0


Query: 11 MASCYSVFIISVMVVIIVVASAEAESKPCDDIYIVKEGETLHTISAKCNDPFIVDHNPQI 70
          MAS +SVF I+VM +I+VVAS  AESKPC+DIY+VKEGETLHTISAKC DPFIVD+NP I
Sbjct: 1  MASYFSVF-ITVMALIMVVAS--AESKPCNDIYVVKEGETLHTISAKCRDPFIVDNNPHI 60

Query: 71 QDSDDVFPGLLIQITPTPINSRKLL 96
          QDSDDVFPGLLIQITPT INSRKLL
Sbjct: 61 QDSDDVFPGLLIQITPTLINSRKLL 82

[Close]

BLAST of Clc06G00150 vs. ExPASy TrEMBL
Match: A0A6J1KYG6 (uncharacterized protein LOC111499354 OS=Cucurbita maxima OX=3661 GN=LOC111499354 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 6.7e-24
Identity = 62/91 (68.13%), Postives = 76/91 (83.52%), Query Frame = 0


Query: 9   SPMA---SCYSVFIISVMVVIIVVASAEAESKPCDDIYIVKEGETLHTISAKCNDPFIVD 68
           SPMA   SCYSVFI   ++++     A A+S PCDDIY+V+EGE+LH+ISAKC+DPFIVD
Sbjct: 39  SPMASSISCYSVFIFMALMLL-----ASAQSGPCDDIYLVREGESLHSISAKCDDPFIVD 98

Query: 69  HNPQIQDSDDVFPGLLIQITPTPINSRKLLF 97
           +NPQIQDSDDVFPGLLI+ITP+ +NSRKL F
Sbjct: 99  YNPQIQDSDDVFPGLLIKITPS-LNSRKLFF 123

[Close]

BLAST of Clc06G00150 vs. ExPASy TrEMBL
Match: A0A6J1H7L7 (uncharacterized protein LOC111460313 OS=Cucurbita moschata OX=3662 GN=LOC111460313 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 2.6e-23
Identity = 62/91 (68.13%), Postives = 76/91 (83.52%), Query Frame = 0


Query: 9   SPMA---SCYSVFIISVMVVIIVVASAEAESKPCDDIYIVKEGETLHTISAKCNDPFIVD 68
           SPMA   SC SVFI   ++++     A A+S PCDDIY+V+EGE+LH+ISAKC+DPFIVD
Sbjct: 39  SPMASSTSCCSVFIFMALMLL-----ASAQSGPCDDIYLVREGESLHSISAKCDDPFIVD 98

Query: 69  HNPQIQDSDDVFPGLLIQITPTPINSRKLLF 97
           +NPQIQDSDDVFPGLLI+ITP+ +NSRKLLF
Sbjct: 99  YNPQIQDSDDVFPGLLIKITPS-LNSRKLLF 123

[Close]

BLAST of Clc06G00150 vs. ExPASy TrEMBL
Match: A0A5A7PQV5 (Peptidoglycan-binding LysM domain-containing family protein OS=Striga asiatica OX=4170 GN=STAS_11231 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.8e-16
Identity = 43/68 (63.24%), Postives = 52/68 (76.47%), Query Frame = 0


Query: 28  VVASAEAESKPCDDIYIVKEGETLHTISAKCNDPFIVDHNPQIQDSDDVFPGLLIQITPT 87
           VV +     +PCD+IY+V EGETLHTIS KC DPFIV+HNP I D DDVFPGL+I+ITP 
Sbjct: 58  VVRAGNQLRRPCDEIYVVGEGETLHTISDKCGDPFIVEHNPHIHDPDDVFPGLVIKITPN 117

Query: 88  PINSRKLL 96
             N+R L+
Sbjct: 118 NPNTRSLI 125

[Close]

BLAST of Clc06G00150 vs. TAIR 10
Match: AT5G62150.1 (peptidoglycan-binding LysM domain-containing protein )

HSP 1 Score: 84.0 bits (206), Expect = 7.9e-17
Identity = 44/91 (48.35%), Postives = 62/91 (68.13%), Query Frame = 0


Query: 12  ASCYSVFIISVMVVIIV--------VASAEAESKPCDDIYIVKEGETLHTISAKCNDPFI 71
           A C +V ++S+++++ V        +  ++  +KPC++IYIV EGETLHTI  KC DPFI
Sbjct: 13  AWCSAVVLLSLILLLSVRENNASNSIRGSQFSTKPCEEIYIVGEGETLHTIGDKCGDPFI 72

Query: 72  VDHNPQIQDSDDVFPGLLIQITPTPINSRKL 95
           V+ NP I D DDVFPGL+++I P   N RKL
Sbjct: 73  VERNPHIHDPDDVFPGLVLKIAPFYFN-RKL 102

[Close]

BLAST of Clc06G00150 vs. TAIR 10
Match: AT3G52790.1 (peptidoglycan-binding LysM domain-containing protein )

HSP 1 Score: 79.0 bits (193), Expect = 2.5e-15
Identity = 35/49 (71.43%), Postives = 41/49 (83.67%), Query Frame = 0


Query: 39  CDDIYIVKEGETLHTISAKCNDPFIVDHNPQIQDSDDVFPGLLIQITPT 88
           CD+IY VKEGETL TIS KC DP+IV+ NP I D DD+FPGLLI+ITP+
Sbjct: 60  CDEIYEVKEGETLQTISEKCGDPYIVEGNPHIHDHDDLFPGLLIRITPS 108

[Close]

BLAST of Clc06G00150 vs. TAIR 10
Match: AT4G25433.1 (peptidoglycan-binding LysM domain-containing protein )

HSP 1 Score: 77.4 bits (189), Expect = 7.4e-15
Identity = 31/48 (64.58%), Postives = 41/48 (85.42%), Query Frame = 0


Query: 37  KPCDDIYIVKEGETLHTISAKCNDPFIVDHNPQIQDSDDVFPGLLIQI 85
           +PC+++Y+V EG+TLH+IS KC DPFIV+ NP I D DDVFPGLLI++
Sbjct: 57  RPCEELYVVGEGDTLHSISEKCGDPFIVERNPHIHDPDDVFPGLLIKL 104

The following BLAST results are available for this feature:

BLAST of Clc06G00150 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN46208.1	6.0e-27	82.35	hypothetical protein Csa_005039 [Cucumis sativus]	[more]
KAA0040027.1	1.8e-26	82.35	hypothetical protein E6C27_scaffold122G003130 [Cucumis melo var. makuwa] >TYK244...	[more]
XP_023006696.1	1.4e-23	68.13	uncharacterized protein LOC111499354 [Cucurbita maxima]	[more]
KAG6574776.1	3.1e-23	68.13	hypothetical protein SDJN03_25415, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022959284.1	5.3e-23	68.13	uncharacterized protein LOC111460313 [Cucurbita moschata]	[more]

BLAST of Clc06G00150 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc06G00150 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K9P3	2.9e-27	82.35	LysM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G074605 PE=4 S...	[more]
A0A5D3DLK6	8.5e-27	82.35	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1KYG6	6.7e-24	68.13	uncharacterized protein LOC111499354 OS=Cucurbita maxima OX=3661 GN=LOC111499354...	[more]
A0A6J1H7L7	2.6e-23	68.13	uncharacterized protein LOC111460313 OS=Cucurbita moschata OX=3662 GN=LOC1114603...	[more]
A0A5A7PQV5	1.8e-16	63.24	Peptidoglycan-binding LysM domain-containing family protein OS=Striga asiatica O...	[more]

BLAST of Clc06G00150 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G62150.1	7.9e-17	48.35	peptidoglycan-binding LysM domain-containing protein	[more]
AT3G52790.1	2.5e-15	71.43	peptidoglycan-binding LysM domain-containing protein	[more]
AT4G25433.1	7.4e-15	64.58	peptidoglycan-binding LysM domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036779	LysM domain superfamily	GENE3D	3.10.350.10	LysM domain	coord: 31..93 e-value: 2.3E-7 score: 32.2
None	No IPR available	PANTHER	PTHR33648	EMBRYO SAC 1	coord: 13..87
None	No IPR available	PANTHER	PTHR33648:SF15	EMBRYO SAC 1	coord: 13..87
IPR018392	LysM domain	CDD	cd00118	LysM	coord: 42..84 e-value: 7.48753E-5 score: 35.1537

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc06G00150.2	Clc06G00150.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane