Clc05G27770 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc05G27770
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	axial regulator YABBY 4
Location	ClcChr05: 34946141 .. 34947211 (-)
RNA-Seq Expression	Clc05G27770
Synteny	Clc05G27770

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACCATCTCTTTGAACTGCCTGAAAAGATTTGTTATGTGCAATGTGGAATTTGTACCACCATTTTGTTGGTAAGTTGGTGTTCTTTTCATTGTTATTCAGCTTCAATTCTCAAGTGAATGATTCTACATGTTTCTTGTTTTGGTCTTTACTTTCGTCCCGAAATGCAGGTCAGTGTGCCGTGCGGCAGCTTATCGATGGCGGTGACTGTGACGTGTGGCCACTGCTCGAGCCTCCTTTCTGTTAACATGATGAAAGCCACTCTGGTTCCTCTTCATTTTCTGTCTTCTTTATCTCGCAATGTGGTATTTGGAGATTTTTTTTTCCACTTTCTCTTCATGAATTCTGATTTAATAATACTCATTATTTCATGTGTTGTTAAAGTTAATTTTTTCCCCTTCTTGTCTAATGTCATTTCAGCCCAAAGAAGCTTGTAGAGAAATGAATTCAGGGAAGTTCTCTGACAGTTTCAAAAGACCAAACTTGAAATTTTCTGAGTATGAAGTTGAAGAAGGCTTGATTCCTGCCACACCTCCTTTTGTAAACAAACGTAAGATCAACATTGGCAAACAATTATACTTGCAACAATAAAATGAACAAATCTGAAAATTTCTATCTTAGTAATATCTTTTCCATTGAATGATCATTTGAAGCTCCTGAGAAGAGACAACGTGCCCCATCAGCATACAACTGTTTCATCAAGTAAGATATCAACGTTTCATACGTTTTGCTAATCTTATCATGAATTTGGGATGGCTTTTTATAAGAATAGTACTTTTGAATGAAAGTACTTCAAGAAGCACTTTTAAGATTGTAGAGAAACATTTTTCAATCTAATATGTTTGTGTTTGGGACAGGGATGAAATCAGAAGGCTCAAAGCTCACAATCCGGAAATGACTCACAAGGAGGCCTTTAGAACAGCTGCAAAGAATGTAAGCAACAGTCTCCAGTCAACTTAATTATGATCAGATTAGGAGCAATTATGTTTTCGTAATCCAAAACCGGTTTTGATTTTTTTCAGTGGGCAAATTTCCCTCCAATCCAAGAAAAAGAAGACACAGAGAACTGA

mRNA sequence

ATGAACCATCTCTTTGAACTGCCTGAAAAGATTTGTTATGTGCAATGTGGAATTTGTACCACCATTTTGTTGGTCAGTGTGCCGTGCGGCAGCTTATCGATGGCGGTGACTGTGACGTGTGGCCACTGCTCGAGCCTCCTTTCTGTTAACATGATGAAAGCCACTCTGGTTCCTCTTCATTTTCTGTCTTCTTTATCTCGCAATGTGCCCAAAGAAGCTTGTAGAGAAATGAATTCAGGGAAGTTCTCTGACAGTTTCAAAAGACCAAACTTGAAATTTTCTGAGTATGAAGTTGAAGAAGGCTTGATTCCTGCCACACCTCCTTTTGTAAACAAACCTCCTGAGAAGAGACAACGTGCCCCATCAGCATACAACTGTTTCATCAAGGATGAAATCAGAAGGCTCAAAGCTCACAATCCGGAAATGACTCACAAGGAGGCCTTTAGAACAGCTGCAAAGAATTGGGCAAATTTCCCTCCAATCCAAGAAAAAGAAGACACAGAGAACTGA

Coding sequence (CDS)

ATGAACCATCTCTTTGAACTGCCTGAAAAGATTTGTTATGTGCAATGTGGAATTTGTACCACCATTTTGTTGGTCAGTGTGCCGTGCGGCAGCTTATCGATGGCGGTGACTGTGACGTGTGGCCACTGCTCGAGCCTCCTTTCTGTTAACATGATGAAAGCCACTCTGGTTCCTCTTCATTTTCTGTCTTCTTTATCTCGCAATGTGCCCAAAGAAGCTTGTAGAGAAATGAATTCAGGGAAGTTCTCTGACAGTTTCAAAAGACCAAACTTGAAATTTTCTGAGTATGAAGTTGAAGAAGGCTTGATTCCTGCCACACCTCCTTTTGTAAACAAACCTCCTGAGAAGAGACAACGTGCCCCATCAGCATACAACTGTTTCATCAAGGATGAAATCAGAAGGCTCAAAGCTCACAATCCGGAAATGACTCACAAGGAGGCCTTTAGAACAGCTGCAAAGAATTGGGCAAATTTCCCTCCAATCCAAGAAAAAGAAGACACAGAGAACTGA

Protein sequence

MNHLFELPEKICYVQCGICTTILLVSVPCGSLSMAVTVTCGHCSSLLSVNMMKATLVPLHFLSSLSRNVPKEACREMNSGKFSDSFKRPNLKFSEYEVEEGLIPATPPFVNKPPEKRQRAPSAYNCFIKDEIRRLKAHNPEMTHKEAFRTAAKNWANFPPIQEKEDTEN

Homology

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BLAST of Clc05G27770 vs. NCBI nr
Match: XP_038893210.1 (axial regulator YABBY 4 isoform X2 [Benincasa hispida])

HSP 1 Score: 314.7 bits (805), Expect = 4.9e-82
Identity = 156/167 (93.41%), Postives = 157/167 (94.01%), Query Frame = 0


Query: 1   MNHLFELPEKICYVQCGICTTILLVSVPCGSLSMAVTVTCGHCSSLLSVNMMKATLVPLH 60
           MN+LFELPEKICYVQCGICTTILLVSVPC SLS AVTVTCGHCSSLLSVNMMKA LVPLH
Sbjct: 1   MNNLFELPEKICYVQCGICTTILLVSVPCSSLSTAVTVTCGHCSSLLSVNMMKANLVPLH 60

Query: 61  FLSSLSRNVPKEACREMNSGKFSDSFKRPNLKFSEYEVEEGLIPATPPFVNKPPEKRQRA 120
           FLSSLS NVPKEACREMNSGKF DSFKR  LKFSEYEVEEGLIP TPPFVNKPPEKRQRA
Sbjct: 61  FLSSLSCNVPKEACREMNSGKFFDSFKRSKLKFSEYEVEEGLIPVTPPFVNKPPEKRQRA 120

Query: 121 PSAYNCFIKDEIRRLKAHNPEMTHKEAFRTAAKNWANFPPIQEKEDT 168
           PSAYNCFIKDEIRRLKA NPEMTHKEAFRTAAKNWANFPPI EKEDT
Sbjct: 121 PSAYNCFIKDEIRRLKAQNPEMTHKEAFRTAAKNWANFPPIHEKEDT 167

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BLAST of Clc05G27770 vs. NCBI nr
Match: XP_008446193.1 (PREDICTED: axial regulator YABBY 4 [Cucumis melo])

HSP 1 Score: 310.1 bits (793), Expect = 1.2e-80
Identity = 154/168 (91.67%), Postives = 156/168 (92.86%), Query Frame = 0


Query: 1   MNHLFELPEKICYVQCGICTTILLVSVPCGSLSMAVTVTCGHCSSLLSVNMMKATLVPLH 60
           MNHLF+LPEKICYVQCGICTTILLVSVPC SLSMAVTVTCGHCSSLLSVNMMKATLVPLH
Sbjct: 1   MNHLFDLPEKICYVQCGICTTILLVSVPCSSLSMAVTVTCGHCSSLLSVNMMKATLVPLH 60

Query: 61  FLSSLSRNVPKEACREMNSGKFSDSFKRPNLKFSEYEVEEGLIPATPPFVNKPPEKRQRA 120
           FLSSLS NVPKE  REMNSGKF DSFKR  LKFSEYEVEE LIPAT PFVNKPPEKRQRA
Sbjct: 61  FLSSLSHNVPKETYREMNSGKFFDSFKRSKLKFSEYEVEEDLIPATTPFVNKPPEKRQRA 120

Query: 121 PSAYNCFIKDEIRRLKAHNPEMTHKEAFRTAAKNWANFPPIQEKEDTE 169
           PSAYNCFIKDEIRRLK  NPEMTHKEAFRTAAKNWANFPPIQEK+D E
Sbjct: 121 PSAYNCFIKDEIRRLKTQNPEMTHKEAFRTAAKNWANFPPIQEKDDKE 168

[Close]

BLAST of Clc05G27770 vs. NCBI nr
Match: KAE8648718.1 (hypothetical protein Csa_008048, partial [Cucumis sativus])

HSP 1 Score: 308.5 bits (789), Expect = 3.5e-80
Identity = 152/168 (90.48%), Postives = 156/168 (92.86%), Query Frame = 0


Query: 1   MNHLFELPEKICYVQCGICTTILLVSVPCGSLSMAVTVTCGHCSSLLSVNMMKATLVPLH 60
           MNHLF+LPEKICYVQCGICTTILLVSVPC SLSMAVTVTCGHCSSLLSVNMMKATLVPLH
Sbjct: 20  MNHLFDLPEKICYVQCGICTTILLVSVPCSSLSMAVTVTCGHCSSLLSVNMMKATLVPLH 79

Query: 61  FLSSLSRNVPKEACREMNSGKFSDSFKRPNLKFSEYEVEEGLIPATPPFVNKPPEKRQRA 120
           FLSSLS NVPKE  REMNSGKF DSFKR NLKFSEYEVE+ LIP T PFVNKPPE+RQRA
Sbjct: 80  FLSSLSHNVPKETYREMNSGKFFDSFKRSNLKFSEYEVEDDLIPVTTPFVNKPPERRQRA 139

Query: 121 PSAYNCFIKDEIRRLKAHNPEMTHKEAFRTAAKNWANFPPIQEKEDTE 169
           PSAYNCFIKDEIRRLK  NPEMTHKEAFRTAAKNWANFPPIQEK+D E
Sbjct: 140 PSAYNCFIKDEIRRLKTQNPEMTHKEAFRTAAKNWANFPPIQEKDDKE 187

[Close]

BLAST of Clc05G27770 vs. NCBI nr
Match: XP_004135480.2 (axial regulator YABBY 4 [Cucumis sativus])

HSP 1 Score: 308.5 bits (789), Expect = 3.5e-80
Identity = 152/168 (90.48%), Postives = 156/168 (92.86%), Query Frame = 0


Query: 1   MNHLFELPEKICYVQCGICTTILLVSVPCGSLSMAVTVTCGHCSSLLSVNMMKATLVPLH 60
           MNHLF+LPEKICYVQCGICTTILLVSVPC SLSMAVTVTCGHCSSLLSVNMMKATLVPLH
Sbjct: 42  MNHLFDLPEKICYVQCGICTTILLVSVPCSSLSMAVTVTCGHCSSLLSVNMMKATLVPLH 101

Query: 61  FLSSLSRNVPKEACREMNSGKFSDSFKRPNLKFSEYEVEEGLIPATPPFVNKPPEKRQRA 120
           FLSSLS NVPKE  REMNSGKF DSFKR NLKFSEYEVE+ LIP T PFVNKPPE+RQRA
Sbjct: 102 FLSSLSHNVPKETYREMNSGKFFDSFKRSNLKFSEYEVEDDLIPVTTPFVNKPPERRQRA 161

Query: 121 PSAYNCFIKDEIRRLKAHNPEMTHKEAFRTAAKNWANFPPIQEKEDTE 169
           PSAYNCFIKDEIRRLK  NPEMTHKEAFRTAAKNWANFPPIQEK+D E
Sbjct: 162 PSAYNCFIKDEIRRLKTQNPEMTHKEAFRTAAKNWANFPPIQEKDDKE 209

[Close]

BLAST of Clc05G27770 vs. NCBI nr
Match: KAG7032292.1 (Axial regulator YABBY 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 305.1 bits (780), Expect = 3.9e-79
Identity = 151/170 (88.82%), Postives = 158/170 (92.94%), Query Frame = 0


Query: 1   MNHLFELPEKICYVQCGICTTILLVSVPCGSLSMAVTVTCGHCSSLLSVNMMKATLVPLH 60
           MNHLFELPEKICYVQCGICTTILLVSVPC SLSM VTVTCGHCSSLLSVNM++ATLVPLH
Sbjct: 1   MNHLFELPEKICYVQCGICTTILLVSVPCSSLSMEVTVTCGHCSSLLSVNMLRATLVPLH 60

Query: 61  FLSSLSRNVPKEACREMNSGKFSDSFKRPNLKFSEYEVEEGLIPATPPFVNKPPEKRQRA 120
           FLSSLSRN+PKEACREM+SGK  DSF R NLKFSEYEVEEGLIP TPP VNKPPEKRQR 
Sbjct: 61  FLSSLSRNLPKEACREMSSGKLFDSFIRSNLKFSEYEVEEGLIPVTPPSVNKPPEKRQRV 120

Query: 121 PSAYNCFIKDEIRRLKAHNPEMTHKEAFRTAAKNWANFPP-IQEKEDTEN 170
           PSAYNCFIKDEIRRLKA NP+MTHKEAFRTAAKNWANFPP IQ+KED +N
Sbjct: 121 PSAYNCFIKDEIRRLKAENPQMTHKEAFRTAAKNWANFPPTIQQKEDPQN 170

[Close]

BLAST of Clc05G27770 vs. ExPASy Swiss-Prot
Match: Q9LDT3 (Axial regulator YABBY 4 OS=Arabidopsis thaliana OX=3702 GN=YAB4 PE=1 SV=2)

HSP 1 Score: 184.5 bits (467), Expect = 1.0e-45
Identity = 101/173 (58.38%), Postives = 118/173 (68.21%), Query Frame = 0


Query: 1   MNHLFELPEKICYVQCGICTTILLVSVPCGSLSMAVTVTCGHCSSLLSVNMMKATLVPLH 60
           +NHLF+LP +IC+VQCG CTTILLVSVP  SLSM VTV CGHC+SLLSVN+MKA+ +PLH
Sbjct: 11  LNHLFDLPGQICHVQCGFCTTILLVSVPFTSLSMVVTVRCGHCTSLLSVNLMKASFIPLH 70

Query: 61  FLSSLSR--NVPKEACREMNSGKFSDSFK-------RPNLKFSEYEVEEGLIPATPPFVN 120
            L+SLS      KE       G   +++K        P    S  + E+  +      VN
Sbjct: 71  LLASLSHLDETGKEEV-AATDGVEEEAWKVNQEKENSPTTLVSSSDNEDEDVSRVYQVVN 130

Query: 121 KPPEKRQRAPSAYNCFIKDEIRRLKAHNPEMTHKEAFRTAAKNWANFPPIQEK 165
           KPPEKRQRAPSAYNCFIK+EIRRLKA NP M HKEAF  AAKNWA+FPP   K
Sbjct: 131 KPPEKRQRAPSAYNCFIKEEIRRLKAQNPSMAHKEAFSLAAKNWAHFPPAHNK 182

[Close]

BLAST of Clc05G27770 vs. ExPASy Swiss-Prot
Match: A2PZN8 (Protein YABBY 7 OS=Oryza sativa subsp. japonica OX=39947 GN=YAB7 PE=2 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 3.8e-29
Identity = 71/168 (42.26%), Postives = 101/168 (60.12%), Query Frame = 0


Query: 2   NHLFELPEKICYVQCGICTTILLVSVPCGSLSMAVTVTCGHCSSLLSVNMMKATLVPLHF 61
           +H   L E++  VQC  C T+LLVSVPC S+   V V CGHCS +LS     A  +P   
Sbjct: 7   HHCSGLRERLGCVQCSFCATVLLVSVPCSSVLRVVAVQCGHCSGILS-----AVNLPPSP 66

Query: 62  LSSLSRNVPKEACREMNSGKFSDSFKRPNLKFSEYEVEEGLIPATPPFVNKPPEKRQRAP 121
           +S+     P+E       G++SD     + +  + E ++   PA     NKPP ++QR P
Sbjct: 67  VSASIELTPQELDAGPPPGEYSDESSGDDREGRDAE-DDAPAPAAAAVANKPPGRKQRTP 126

Query: 122 SAYNCFIKDEIRRLKAHNPEMTHKEAFRTAAKNWANFPPIQEKEDTEN 170
           SAYNCF+K+EI+R+K+  P +THK+AF TAAKNWA+ P IQ+K   ++
Sbjct: 127 SAYNCFVKEEIKRIKSMEPNITHKQAFSTAAKNWAHLPRIQQKRGRDS 168

[Close]

BLAST of Clc05G27770 vs. ExPASy Swiss-Prot
Match: Q8GW46 (Axial regulator YABBY 5 OS=Arabidopsis thaliana OX=3702 GN=YAB5 PE=1 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 5.0e-29
Identity = 76/154 (49.35%), Postives = 95/154 (61.69%), Query Frame = 0


Query: 9   EKICYVQCGICTTILLVSVPCGSLSMAVTVTCGHCSSLLSVNMMKATLVPLHFLSSLSR- 68
           E++CY+ C  C  IL V+VPC SL   VTV CGHC++L SVNM  A       L SLSR 
Sbjct: 9   EQLCYIPCNFCNIILAVNVPCSSLFDIVTVRCGHCTNLWSVNMAAA-------LQSLSRP 68

Query: 69  NVPKEACREMNSGKFSDSFKRPNLKFSEYEVEEGLIPATPPFVNKPPEKRQRAPSAYNCF 128
           N           G  S S  +   + S   + E  I      VN+PPEKRQR PSAYN F
Sbjct: 69  NFQATNYAVPEYGSSSRSHTKIPSRISTRTITEQRI------VNRPPEKRQRVPSAYNQF 128

Query: 129 IKDEIRRLKAHNPEMTHKEAFRTAAKNWANFPPI 162
           IK+EI+R+KA+NP+++H+EAF TAAKNWA+FP I
Sbjct: 129 IKEEIQRIKANNPDISHREAFSTAAKNWAHFPHI 149

[Close]

BLAST of Clc05G27770 vs. ExPASy Swiss-Prot
Match: Q9XFB1 (Axial regulator YABBY 3 OS=Arabidopsis thaliana OX=3702 GN=YAB3 PE=1 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.1e-28
Identity = 80/179 (44.69%), Postives = 102/179 (56.98%), Query Frame = 0


Query: 5   FELPEKICYVQCGICTTILLVSVPCGSLSMAVTVTCGHCSSLLSVNM-MKATLVPL---- 64
           F   +++CYV C  C T+L VSVP  SL   VTV CGHCS+LLSV + M+A L+P     
Sbjct: 19  FSSTDQLCYVHCSFCDTVLAVSVPPSSLFKTVTVRCGHCSNLLSVTVSMRALLLPSVSNL 78

Query: 65  --HFLSSLSRNVPKEACREMNSGKFSDSFK-RPNLKFSEYEVEEGLIPAT---------- 124
              FL       P     EM SG  + +     +   S +   E L+ AT          
Sbjct: 79  GHSFLPPPPPPPPPNLLEEMRSGGQNINMNMMMSHHASAHHPNEHLVMATRNGRSVDHLQ 138

Query: 125 ----PPFVNKPPEKRQRAPSAYNCFIKDEIRRLKAHNPEMTHKEAFRTAAKNWANFPPI 162
               PP  N+PPEKRQR PSAYN FIK+EI+R+KA NP+++H+EAF  AAKNWA+FP I
Sbjct: 139 EMPRPPPANRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHI 197

[Close]

BLAST of Clc05G27770 vs. ExPASy Swiss-Prot
Match: Q10FZ7 (Protein YABBY 2 OS=Oryza sativa subsp. japonica OX=39947 GN=YAB2 PE=2 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.9e-28
Identity = 77/158 (48.73%), Postives = 99/158 (62.66%), Query Frame = 0


Query: 8   PEKICYVQCGICTTILLVSVPCGSLSMAVTVTCGHCSSLLSVN---MMKATLVPLHFLSS 67
           PE +CYV C  C TI  VSVP  S+   VTV CGHC+SLLSVN   +++A     H   +
Sbjct: 9   PEHVCYVHCNFCNTIFAVSVPSNSMLNIVTVRCGHCTSLLSVNLRGLVQALPAEDHLQDN 68

Query: 68  LSRNVPKEACREMNSGKFSDS-FKRPNLKFSEYEVEEGLIPATPPFVNKPPEKRQRAPSA 127
           L  +    + RE  S   S S + R  + FS+ + E  L         +PPEKRQR PSA
Sbjct: 69  LKMH--NMSFRENYSEYGSSSRYGRVPMMFSKNDTEHMLHV-------RPPEKRQRVPSA 128

Query: 128 YNCFIKDEIRRLKAHNPEMTHKEAFRTAAKNWANFPPI 162
           YN FIK+EIRR+KA+NP+++H+EAF TAAKNWA+FP I
Sbjct: 129 YNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHFPNI 157

[Close]

BLAST of Clc05G27770 vs. ExPASy TrEMBL
Match: A0A1S3BDZ8 (axial regulator YABBY 4 OS=Cucumis melo OX=3656 GN=LOC103488996 PE=3 SV=1)

HSP 1 Score: 310.1 bits (793), Expect = 5.8e-81
Identity = 154/168 (91.67%), Postives = 156/168 (92.86%), Query Frame = 0


Query: 1   MNHLFELPEKICYVQCGICTTILLVSVPCGSLSMAVTVTCGHCSSLLSVNMMKATLVPLH 60
           MNHLF+LPEKICYVQCGICTTILLVSVPC SLSMAVTVTCGHCSSLLSVNMMKATLVPLH
Sbjct: 1   MNHLFDLPEKICYVQCGICTTILLVSVPCSSLSMAVTVTCGHCSSLLSVNMMKATLVPLH 60

Query: 61  FLSSLSRNVPKEACREMNSGKFSDSFKRPNLKFSEYEVEEGLIPATPPFVNKPPEKRQRA 120
           FLSSLS NVPKE  REMNSGKF DSFKR  LKFSEYEVEE LIPAT PFVNKPPEKRQRA
Sbjct: 61  FLSSLSHNVPKETYREMNSGKFFDSFKRSKLKFSEYEVEEDLIPATTPFVNKPPEKRQRA 120

Query: 121 PSAYNCFIKDEIRRLKAHNPEMTHKEAFRTAAKNWANFPPIQEKEDTE 169
           PSAYNCFIKDEIRRLK  NPEMTHKEAFRTAAKNWANFPPIQEK+D E
Sbjct: 121 PSAYNCFIKDEIRRLKTQNPEMTHKEAFRTAAKNWANFPPIQEKDDKE 168

[Close]

BLAST of Clc05G27770 vs. ExPASy TrEMBL
Match: A0A0A0KTN4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G600930 PE=3 SV=1)

HSP 1 Score: 308.5 bits (789), Expect = 1.7e-80
Identity = 152/168 (90.48%), Postives = 156/168 (92.86%), Query Frame = 0


Query: 1   MNHLFELPEKICYVQCGICTTILLVSVPCGSLSMAVTVTCGHCSSLLSVNMMKATLVPLH 60
           MNHLF+LPEKICYVQCGICTTILLVSVPC SLSMAVTVTCGHCSSLLSVNMMKATLVPLH
Sbjct: 1   MNHLFDLPEKICYVQCGICTTILLVSVPCSSLSMAVTVTCGHCSSLLSVNMMKATLVPLH 60

Query: 61  FLSSLSRNVPKEACREMNSGKFSDSFKRPNLKFSEYEVEEGLIPATPPFVNKPPEKRQRA 120
           FLSSLS NVPKE  REMNSGKF DSFKR NLKFSEYEVE+ LIP T PFVNKPPE+RQRA
Sbjct: 61  FLSSLSHNVPKETYREMNSGKFFDSFKRSNLKFSEYEVEDDLIPVTTPFVNKPPERRQRA 120

Query: 121 PSAYNCFIKDEIRRLKAHNPEMTHKEAFRTAAKNWANFPPIQEKEDTE 169
           PSAYNCFIKDEIRRLK  NPEMTHKEAFRTAAKNWANFPPIQEK+D E
Sbjct: 121 PSAYNCFIKDEIRRLKTQNPEMTHKEAFRTAAKNWANFPPIQEKDDKE 168

[Close]

BLAST of Clc05G27770 vs. ExPASy TrEMBL
Match: A0A6J1JEX5 (axial regulator YABBY 4 isoform X4 OS=Cucurbita maxima OX=3661 GN=LOC111483786 PE=3 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 5.4e-79
Identity = 150/170 (88.24%), Postives = 157/170 (92.35%), Query Frame = 0


Query: 1   MNHLFELPEKICYVQCGICTTILLVSVPCGSLSMAVTVTCGHCSSLLSVNMMKATLVPLH 60
           MNHLFELPEKICYVQCGICTTILLVSVPC SLSM VTVTCGHCSSLLSVNM++ATLVPLH
Sbjct: 1   MNHLFELPEKICYVQCGICTTILLVSVPCSSLSMEVTVTCGHCSSLLSVNMLRATLVPLH 60

Query: 61  FLSSLSRNVPKEACREMNSGKFSDSFKRPNLKFSEYEVEEGLIPATPPFVNKPPEKRQRA 120
           FLSSLSRN+PKE CREM+SGK  DSF R NLKFSEYEVEEGLIP TPP VNKPPEKRQR 
Sbjct: 61  FLSSLSRNLPKETCREMSSGKLFDSFIRSNLKFSEYEVEEGLIPVTPPSVNKPPEKRQRV 120

Query: 121 PSAYNCFIKDEIRRLKAHNPEMTHKEAFRTAAKNWANFPP-IQEKEDTEN 170
           PSAYNCFIKDEIRRLKA NP+MTHKEAFRTAAKNWANFPP IQ+KED +N
Sbjct: 121 PSAYNCFIKDEIRRLKAENPQMTHKEAFRTAAKNWANFPPTIQQKEDPQN 170

[Close]

BLAST of Clc05G27770 vs. ExPASy TrEMBL
Match: A0A6J1JCH4 (axial regulator YABBY 4 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111483786 PE=3 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 5.4e-79
Identity = 150/170 (88.24%), Postives = 157/170 (92.35%), Query Frame = 0


Query: 1   MNHLFELPEKICYVQCGICTTILLVSVPCGSLSMAVTVTCGHCSSLLSVNMMKATLVPLH 60
           MNHLFELPEKICYVQCGICTTILLVSVPC SLSM VTVTCGHCSSLLSVNM++ATLVPLH
Sbjct: 1   MNHLFELPEKICYVQCGICTTILLVSVPCSSLSMEVTVTCGHCSSLLSVNMLRATLVPLH 60

Query: 61  FLSSLSRNVPKEACREMNSGKFSDSFKRPNLKFSEYEVEEGLIPATPPFVNKPPEKRQRA 120
           FLSSLSRN+PKE CREM+SGK  DSF R NLKFSEYEVEEGLIP TPP VNKPPEKRQR 
Sbjct: 61  FLSSLSRNLPKETCREMSSGKLFDSFIRSNLKFSEYEVEEGLIPVTPPSVNKPPEKRQRV 120

Query: 121 PSAYNCFIKDEIRRLKAHNPEMTHKEAFRTAAKNWANFPP-IQEKEDTEN 170
           PSAYNCFIKDEIRRLKA NP+MTHKEAFRTAAKNWANFPP IQ+KED +N
Sbjct: 121 PSAYNCFIKDEIRRLKAENPQMTHKEAFRTAAKNWANFPPTIQQKEDPQN 170

[Close]

BLAST of Clc05G27770 vs. ExPASy TrEMBL
Match: A0A6J1J630 (axial regulator YABBY 4 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111483786 PE=3 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 5.4e-79
Identity = 150/170 (88.24%), Postives = 157/170 (92.35%), Query Frame = 0


Query: 1   MNHLFELPEKICYVQCGICTTILLVSVPCGSLSMAVTVTCGHCSSLLSVNMMKATLVPLH 60
           MNHLFELPEKICYVQCGICTTILLVSVPC SLSM VTVTCGHCSSLLSVNM++ATLVPLH
Sbjct: 1   MNHLFELPEKICYVQCGICTTILLVSVPCSSLSMEVTVTCGHCSSLLSVNMLRATLVPLH 60

Query: 61  FLSSLSRNVPKEACREMNSGKFSDSFKRPNLKFSEYEVEEGLIPATPPFVNKPPEKRQRA 120
           FLSSLSRN+PKE CREM+SGK  DSF R NLKFSEYEVEEGLIP TPP VNKPPEKRQR 
Sbjct: 61  FLSSLSRNLPKETCREMSSGKLFDSFIRSNLKFSEYEVEEGLIPVTPPSVNKPPEKRQRV 120

Query: 121 PSAYNCFIKDEIRRLKAHNPEMTHKEAFRTAAKNWANFPP-IQEKEDTEN 170
           PSAYNCFIKDEIRRLKA NP+MTHKEAFRTAAKNWANFPP IQ+KED +N
Sbjct: 121 PSAYNCFIKDEIRRLKAENPQMTHKEAFRTAAKNWANFPPTIQQKEDPQN 170

[Close]

BLAST of Clc05G27770 vs. TAIR 10
Match: AT1G23420.1 (Plant-specific transcription factor YABBY family protein )

HSP 1 Score: 184.5 bits (467), Expect = 7.1e-47
Identity = 101/173 (58.38%), Postives = 118/173 (68.21%), Query Frame = 0


Query: 1   MNHLFELPEKICYVQCGICTTILLVSVPCGSLSMAVTVTCGHCSSLLSVNMMKATLVPLH 60
           +NHLF+LP +IC+VQCG CTTILLVSVP  SLSM VTV CGHC+SLLSVN+MKA+ +PLH
Sbjct: 11  LNHLFDLPGQICHVQCGFCTTILLVSVPFTSLSMVVTVRCGHCTSLLSVNLMKASFIPLH 70

Query: 61  FLSSLSR--NVPKEACREMNSGKFSDSFK-------RPNLKFSEYEVEEGLIPATPPFVN 120
            L+SLS      KE       G   +++K        P    S  + E+  +      VN
Sbjct: 71  LLASLSHLDETGKEEV-AATDGVEEEAWKVNQEKENSPTTLVSSSDNEDEDVSRVYQVVN 130

Query: 121 KPPEKRQRAPSAYNCFIKDEIRRLKAHNPEMTHKEAFRTAAKNWANFPPIQEK 165
           KPPEKRQRAPSAYNCFIK+EIRRLKA NP M HKEAF  AAKNWA+FPP   K
Sbjct: 131 KPPEKRQRAPSAYNCFIKEEIRRLKAQNPSMAHKEAFSLAAKNWAHFPPAHNK 182

[Close]

BLAST of Clc05G27770 vs. TAIR 10
Match: AT2G26580.1 (plant-specific transcription factor YABBY family protein )

HSP 1 Score: 129.0 bits (323), Expect = 3.5e-30
Identity = 76/154 (49.35%), Postives = 95/154 (61.69%), Query Frame = 0


Query: 9   EKICYVQCGICTTILLVSVPCGSLSMAVTVTCGHCSSLLSVNMMKATLVPLHFLSSLSR- 68
           E++CY+ C  C  IL V+VPC SL   VTV CGHC++L SVNM  A       L SLSR 
Sbjct: 9   EQLCYIPCNFCNIILAVNVPCSSLFDIVTVRCGHCTNLWSVNMAAA-------LQSLSRP 68

Query: 69  NVPKEACREMNSGKFSDSFKRPNLKFSEYEVEEGLIPATPPFVNKPPEKRQRAPSAYNCF 128
           N           G  S S  +   + S   + E  I      VN+PPEKRQR PSAYN F
Sbjct: 69  NFQATNYAVPEYGSSSRSHTKIPSRISTRTITEQRI------VNRPPEKRQRVPSAYNQF 128

Query: 129 IKDEIRRLKAHNPEMTHKEAFRTAAKNWANFPPI 162
           IK+EI+R+KA+NP+++H+EAF TAAKNWA+FP I
Sbjct: 129 IKEEIQRIKANNPDISHREAFSTAAKNWAHFPHI 149

[Close]

BLAST of Clc05G27770 vs. TAIR 10
Match: AT2G26580.2 (plant-specific transcription factor YABBY family protein )

HSP 1 Score: 129.0 bits (323), Expect = 3.5e-30
Identity = 76/154 (49.35%), Postives = 95/154 (61.69%), Query Frame = 0


Query: 9   EKICYVQCGICTTILLVSVPCGSLSMAVTVTCGHCSSLLSVNMMKATLVPLHFLSSLSR- 68
           E++CY+ C  C  IL V+VPC SL   VTV CGHC++L SVNM  A       L SLSR 
Sbjct: 9   EQLCYIPCNFCNIILAVNVPCSSLFDIVTVRCGHCTNLWSVNMAAA-------LQSLSRP 68

Query: 69  NVPKEACREMNSGKFSDSFKRPNLKFSEYEVEEGLIPATPPFVNKPPEKRQRAPSAYNCF 128
           N           G  S S  +   + S   + E  I      VN+PPEKRQR PSAYN F
Sbjct: 69  NFQATNYAVPEYGSSSRSHTKIPSRISTRTITEQRI------VNRPPEKRQRVPSAYNQF 128

Query: 129 IKDEIRRLKAHNPEMTHKEAFRTAAKNWANFPPI 162
           IK+EI+R+KA+NP+++H+EAF TAAKNWA+FP I
Sbjct: 129 IKEEIQRIKANNPDISHREAFSTAAKNWAHFPHI 149

[Close]

BLAST of Clc05G27770 vs. TAIR 10
Match: AT4G00180.1 (Plant-specific transcription factor YABBY family protein )

HSP 1 Score: 127.9 bits (320), Expect = 7.9e-30
Identity = 80/179 (44.69%), Postives = 102/179 (56.98%), Query Frame = 0


Query: 5   FELPEKICYVQCGICTTILLVSVPCGSLSMAVTVTCGHCSSLLSVNM-MKATLVPL---- 64
           F   +++CYV C  C T+L VSVP  SL   VTV CGHCS+LLSV + M+A L+P     
Sbjct: 19  FSSTDQLCYVHCSFCDTVLAVSVPPSSLFKTVTVRCGHCSNLLSVTVSMRALLLPSVSNL 78

Query: 65  --HFLSSLSRNVPKEACREMNSGKFSDSFK-RPNLKFSEYEVEEGLIPAT---------- 124
              FL       P     EM SG  + +     +   S +   E L+ AT          
Sbjct: 79  GHSFLPPPPPPPPPNLLEEMRSGGQNINMNMMMSHHASAHHPNEHLVMATRNGRSVDHLQ 138

Query: 125 ----PPFVNKPPEKRQRAPSAYNCFIKDEIRRLKAHNPEMTHKEAFRTAAKNWANFPPI 162
               PP  N+PPEKRQR PSAYN FIK+EI+R+KA NP+++H+EAF  AAKNWA+FP I
Sbjct: 139 EMPRPPPANRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHI 197

[Close]

BLAST of Clc05G27770 vs. TAIR 10
Match: AT1G08465.1 (Plant-specific transcription factor YABBY family protein )

HSP 1 Score: 125.6 bits (314), Expect = 3.9e-29
Identity = 78/157 (49.68%), Postives = 97/157 (61.78%), Query Frame = 0


Query: 9   EKICYVQCGICTTILLVSVPCGSLSMAVTVTCGHCSSLLSVNMMKATLVPLHFLSSLSRN 68
           E++CYV C  CTTIL VSVP  SL   VTV CGHC++LLS+N+     V LH  S+   +
Sbjct: 8   ERVCYVHCSFCTTILAVSVPYASLFTLVTVRCGHCTNLLSLNIG----VSLHQTSAPPIH 67

Query: 69  VPKEACREMNSG----KFSDSFKRPNLKFSEYEVEEGLIPATPPFVNKPPEKRQRAPSAY 128
              +  R+  +     K   S  R     SE    E   P  PP   +PPEKRQR PSAY
Sbjct: 68  QDLQPHRQHTTSLVTRKDCASSSRSTNNLSENIDREA--PRMPPI--RPPEKRQRVPSAY 127

Query: 129 NCFIKDEIRRLKAHNPEMTHKEAFRTAAKNWANFPPI 162
           N FIK+EI+R+KA NPE++H+EAF TAAKNWA+FP I
Sbjct: 128 NRFIKEEIQRIKACNPEISHREAFSTAAKNWAHFPHI 156

The following BLAST results are available for this feature:

BLAST of Clc05G27770 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038893210.1	4.9e-82	93.41	axial regulator YABBY 4 isoform X2 [Benincasa hispida]	[more]
XP_008446193.1	1.2e-80	91.67	PREDICTED: axial regulator YABBY 4 [Cucumis melo]	[more]
KAE8648718.1	3.5e-80	90.48	hypothetical protein Csa_008048, partial [Cucumis sativus]	[more]
XP_004135480.2	3.5e-80	90.48	axial regulator YABBY 4 [Cucumis sativus]	[more]
KAG7032292.1	3.9e-79	88.82	Axial regulator YABBY 4, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Clc05G27770 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LDT3	1.0e-45	58.38	Axial regulator YABBY 4 OS=Arabidopsis thaliana OX=3702 GN=YAB4 PE=1 SV=2	[more]
A2PZN8	3.8e-29	42.26	Protein YABBY 7 OS=Oryza sativa subsp. japonica OX=39947 GN=YAB7 PE=2 SV=1	[more]
Q8GW46	5.0e-29	49.35	Axial regulator YABBY 5 OS=Arabidopsis thaliana OX=3702 GN=YAB5 PE=1 SV=1	[more]
Q9XFB1	1.1e-28	44.69	Axial regulator YABBY 3 OS=Arabidopsis thaliana OX=3702 GN=YAB3 PE=1 SV=1	[more]
Q10FZ7	1.9e-28	48.73	Protein YABBY 2 OS=Oryza sativa subsp. japonica OX=39947 GN=YAB2 PE=2 SV=1	[more]

BLAST of Clc05G27770 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BDZ8	5.8e-81	91.67	axial regulator YABBY 4 OS=Cucumis melo OX=3656 GN=LOC103488996 PE=3 SV=1	[more]
A0A0A0KTN4	1.7e-80	90.48	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G600930 PE=3 SV=1	[more]
A0A6J1JEX5	5.4e-79	88.24	axial regulator YABBY 4 isoform X4 OS=Cucurbita maxima OX=3661 GN=LOC111483786 P...	[more]
A0A6J1JCH4	5.4e-79	88.24	axial regulator YABBY 4 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111483786 P...	[more]
A0A6J1J630	5.4e-79	88.24	axial regulator YABBY 4 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111483786 P...	[more]

BLAST of Clc05G27770 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G23420.1	7.1e-47	58.38	Plant-specific transcription factor YABBY family protein	[more]
AT2G26580.1	3.5e-30	49.35	plant-specific transcription factor YABBY family protein	[more]
AT2G26580.2	3.5e-30	49.35	plant-specific transcription factor YABBY family protein	[more]
AT4G00180.1	7.9e-30	44.69	Plant-specific transcription factor YABBY family protein	[more]
AT1G08465.1	3.9e-29	49.68	Plant-specific transcription factor YABBY family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036910	High mobility group box domain superfamily	GENE3D	1.10.30.10	High mobility group box domain	coord: 109..169 e-value: 3.1E-8 score: 35.8
IPR036910	High mobility group box domain superfamily	SUPERFAMILY	47095	HMG-box	coord: 104..160
IPR006780	YABBY protein	PFAM	PF04690	YABBY	coord: 8..162 e-value: 5.1E-58 score: 196.3
IPR006780	YABBY protein	PANTHER	PTHR31675	PROTEIN YABBY 6-RELATED	coord: 1..167
None	No IPR available	PANTHER	PTHR31675:SF8	AXIAL REGULATOR YABBY 4	coord: 1..167
None	No IPR available	CDD	cd00084	HMG-box	coord: 119..165 e-value: 2.2577E-4 score: 36.0576
IPR009071	High mobility group box domain	PROSITE	PS50118	HMG_BOX_2	coord: 117..169 score: 8.708683

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc05G27770.2	Clc05G27770.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007275	multicellular organism development