Clc05G27340 (gene) Watermelon (cordophanus) v2

Overview
NameClc05G27340
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Descriptionprotein PLASTID REDOX INSENSITIVE 2, chloroplastic-like isoform X1
LocationClcChr05: 34660031 .. 34662285 (+)
RNA-Seq ExpressionClc05G27340
SyntenyClc05G27340
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGCTCTACGGTTGTGCTCTGGTCTCTCCCATTGCAGTTTCTCCCGCCAAGATCACAAGCTTCAACGGTTTTCACTACCCACCATTTTCCTCTTTCCCTCCTTTCGTAAAGCCCTTCGTTAATTCTACCTTAACTTCGTCCTTCATTTACAGAGCCACTCCGATCCCCGCCAGCTATGTTTACCCTGAACCGATACCGGAATTTGCAGAAGTTGTAAGTTTTCCCGACGTAGCTTCTTTGTCTGCTCAATTCATTCTGGTTTTGCGTTATGTGGTCGCGTTGATTAATACATTTCGCTTTTTGCAGGAAACCCAGAAATTTAAGGAGCAGTTATCGAACAAACTAGCGAAGCATCACGAGACATTTGGGAACGACCTCGATTCGGTTGTGGATGTTTGCTCGAAGGTAATCATTTTATTGATTTGCAACACGATTAGATTGAAAAGACTGTAATTTCGTTATTGGGTAATTATTAGAATTTTGAATTCCTTTGTATTGGGTTGAAGAATATGTCTGAGTGGCCTACCCGTTTGAGAAAAATGTGTAAATCGAACGAGGCCATTGTTTCCTTAAAGAGTTAGTTTTATTTTAGTTGTGCTTTTTCCTTCAAGTGTTTCCATGGCGTGAGATTTATTTCCCAACATTTCAATAATTGAGACCTGAGGAAACATCGGACCTGCCTATTGAGCTACAGGACGATCACTATTTCCAAGACAGCTTCCATTAATTGCGCAGAATTTTTCTGAATGTTTGACTAGTGCTGCCATTATTGATATGCTTCTTGCATTTTTGATTTTTCAAATCAAACTTGAATGAATATTCCAATTTGAATTCAGTTGTCCGGATTTAAGTGAGCTTAACATGAACGTACTTGCAAGTTTTGAGCAGATATTTGGTGAATATTTGCATGTGGAGTACGGAGGTCCTGGGACATTATTAGTGGAGCCTTTCACTAATATGTTTATTGCTCTCAACGAGAGGAAATTACCTGGAGCGCCTTTGGCCGCTAGAACTTCTCTCCTATGGGCTCAAAACCATCTAGATCACGATTGGAAAGTTTGGAACTCAAAAGGAGGGCTCAATTGATTTGCTTCTAGTTGTTATATTTGTGAAGATCCTTGTATTTGTATCTAGATTCTGTTATCTTTGATCTTGTGTTGAAGATGATGGAGGAAAAAATGTGTGTATCATCACAAAGATACTCCAACACAGTGTCAATTTCATTGATATCTTTGTTGCTATACAATTGGCTTATTTGTTGCAATTGCAGTACATGAATCATTCTGGGGCTGTGGTTTTACACTGAATTGGTAACTTGGATACCCATTTTCAAGCTCCCTCTGAATCTTCTAGCTTTCAATAAATTGAGATGTTTATCTGCCATCAACGAGCATCTTAAATCGAACTCCTCTATGTTGTCGTATGAACCACTCTTGCTTGTTTTGATGAAAAAATGATGAAACATAAATCAGCTGGCAGCTTCAGAGATGCTCTGCAATGATGGTCTCCAAGTCTTTGACCTCGTAACGGTGGCGTTTGCTGGTGTTCTGATTCGATGTCTTTCATGTTTGACTGCCTGCAATGTTTTTTCGGAGAGATTATTGGTATGATTTTATTTCGGAAAAATCACTTCAATTTGGAAATGACCCCCCCCAGTCACAATCATATTTGACTTTTTCACTTTCTTTTGCAGTGATCAATTCTCATTCAAAAAGGAAACAAGTTGGGTTACCTGCTTGTTCTTTTCAGTATCTTCTACTTCACCGCCGGCAGATCGCTTCTCCGACGCCGTCTCTGGCTTCTCCTCCAATTCCGGCAGTGGCTTCTTAGATTTTGCATACTTTTTAGCCCGCAAAACCTTCATGACCTCTGGAAGTTCCAAACGAAACGTCAAAAGGGCTGAACTTATTATATTAAACAGAAGGAAGTGTAAAAACCTTCAAAAAGCAAAAATGGAAAAGAGGCAGCATACCCTGAGTTGTAACAAGCCGATAGGCATGGCCAAGAGCAAGAGTATCATTTGGCCGGAGAAGCTTGACACGAGTAAAACGCACCGTCTTCGGCTCCCGATTGTCTTCCTCAGATTGAGGCAAGGGAATTATAAGAGAAACATAGTGACCCGGATTAGTCCTCATAACCTCACTGGCCACCACCGGCCAATACAGCCTCTCAATCCGGCCACTTGGGTGCTGTATAACAAGAGCCGCCGCATCAACCGCCTGGCAATTCCCCATCTGAATTGTGTGTGGTAG

mRNA sequence

ATGGCGCTCTACGGTTGTGCTCTGGTCTCTCCCATTGCAGTTTCTCCCGCCAAGATCACAAGCTTCAACGGTTTTCACTACCCACCATTTTCCTCTTTCCCTCCTTTCGTAAAGCCCTTCGTTAATTCTACCTTAACTTCGTCCTTCATTTACAGAGCCACTCCGATCCCCGCCAGCTATGTTTACCCTGAACCGATACCGGAATTTGCAGAAGTTGAAACCCAGAAATTTAAGGAGCAGTTATCGAACAAACTAGCGAAGCATCACGAGACATTTGGGAACGACCTCGATTCGGTTGTGGATGTTTGCTCGAAGCTGGCAGCTTCAGAGATGCTCTGCAATGATGGTCTCCAAGTCTTTGACCTCGTAACGGTGGCGTTTGCTGGTGTTCTGATTCGATGTCTTTCATGTTTGACTGCCTGCAATGTTTTTTCGGAGAGATTATTGGAAACAAGTTGGGTTACCTGCTTGTTCTTTTCAGTATCTTCTACTTCACCGCCGGCAGATCGCTTCTCCGACGCCGTCTCTGGCTTCTCCTCCAATTCCGGCAGTGGCTTCTTAGATTTTGCATACTTTTTAGCCCGCAAAACCTTCATGACCTCTGGAAGTTCCAAACGAAACGTCAAAAGGGCTGAACTTATTATATTAAACAGAAGGAAGTGTAAAAACCTTCAAAAAGCAAAAATGGAAAAGAGGCAGCATACCCTGAGTTGTAACAAGCCGATAGGCATGGCCAAGAGCAAGAGTATCATTTGGCCGGAGAAGCTTGACACGAGTAAAACGCACCGTCTTCGGCTCCCGATTGTCTTCCTCAGATTGAGGCAAGGGAATTATAAGAGAAACATAGTGACCCGGATTAGTCCTCATAACCTCACTGGCCACCACCGGCCAATACAGCCTCTCAATCCGGCCACTTGGGTGCTGTATAACAAGAGCCGCCGCATCAACCGCCTGGCAATTCCCCATCTGAATTGTGTGTGGTAG

Coding sequence (CDS)

ATGGCGCTCTACGGTTGTGCTCTGGTCTCTCCCATTGCAGTTTCTCCCGCCAAGATCACAAGCTTCAACGGTTTTCACTACCCACCATTTTCCTCTTTCCCTCCTTTCGTAAAGCCCTTCGTTAATTCTACCTTAACTTCGTCCTTCATTTACAGAGCCACTCCGATCCCCGCCAGCTATGTTTACCCTGAACCGATACCGGAATTTGCAGAAGTTGAAACCCAGAAATTTAAGGAGCAGTTATCGAACAAACTAGCGAAGCATCACGAGACATTTGGGAACGACCTCGATTCGGTTGTGGATGTTTGCTCGAAGCTGGCAGCTTCAGAGATGCTCTGCAATGATGGTCTCCAAGTCTTTGACCTCGTAACGGTGGCGTTTGCTGGTGTTCTGATTCGATGTCTTTCATGTTTGACTGCCTGCAATGTTTTTTCGGAGAGATTATTGGAAACAAGTTGGGTTACCTGCTTGTTCTTTTCAGTATCTTCTACTTCACCGCCGGCAGATCGCTTCTCCGACGCCGTCTCTGGCTTCTCCTCCAATTCCGGCAGTGGCTTCTTAGATTTTGCATACTTTTTAGCCCGCAAAACCTTCATGACCTCTGGAAGTTCCAAACGAAACGTCAAAAGGGCTGAACTTATTATATTAAACAGAAGGAAGTGTAAAAACCTTCAAAAAGCAAAAATGGAAAAGAGGCAGCATACCCTGAGTTGTAACAAGCCGATAGGCATGGCCAAGAGCAAGAGTATCATTTGGCCGGAGAAGCTTGACACGAGTAAAACGCACCGTCTTCGGCTCCCGATTGTCTTCCTCAGATTGAGGCAAGGGAATTATAAGAGAAACATAGTGACCCGGATTAGTCCTCATAACCTCACTGGCCACCACCGGCCAATACAGCCTCTCAATCCGGCCACTTGGGTGCTGTATAACAAGAGCCGCCGCATCAACCGCCTGGCAATTCCCCATCTGAATTGTGTGTGGTAG

Protein sequence

MALYGCALVSPIAVSPAKITSFNGFHYPPFSSFPPFVKPFVNSTLTSSFIYRATPIPASYVYPEPIPEFAEVETQKFKEQLSNKLAKHHETFGNDLDSVVDVCSKLAASEMLCNDGLQVFDLVTVAFAGVLIRCLSCLTACNVFSERLLETSWVTCLFFSVSSTSPPADRFSDAVSGFSSNSGSGFLDFAYFLARKTFMTSGSSKRNVKRAELIILNRRKCKNLQKAKMEKRQHTLSCNKPIGMAKSKSIIWPEKLDTSKTHRLRLPIVFLRLRQGNYKRNIVTRISPHNLTGHHRPIQPLNPATWVLYNKSRRINRLAIPHLNCVW
Homology
[Close]
BLAST of Clc05G27340 vs. NCBI nr
Match: XP_038891536.1 (protein PLASTID REDOX INSENSITIVE 2, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 186.0 bits (471), Expect = 5.1e-43
Identity = 94/106 (88.68%), Postives = 96/106 (90.57%), Query Frame = 0 

Query: 1   MALYGCALVSPIAVSPAKITSFNGFHYPPFSSFPPFVKPFVNSTLTSSFIYRATPIPASY 60
           MA YGCALV  IAVSPAKITSFNG HYP FS+FP FVKPFVN TLTSSFIYRATPIPASY
Sbjct: 1   MAPYGCALVLAIAVSPAKITSFNGLHYPIFSTFPSFVKPFVNYTLTSSFIYRATPIPASY 60

Query: 61  VYPEPIPEFAEVETQKFKEQLSNKLAKHHETFGNDLDSVVDVCSKL 107
           VYPEPIPEFAEVETQKFKEQLS KLAK  ETFGNDLDSVVDVCSK+
Sbjct: 61  VYPEPIPEFAEVETQKFKEQLSKKLAKDRETFGNDLDSVVDVCSKI 106

[Close]
BLAST of Clc05G27340 vs. NCBI nr
Match: XP_008446245.1 (PREDICTED: uncharacterized protein LOC103489034 isoform X3 [Cucumis melo])

HSP 1 Score: 177.6 bits (449), Expect = 1.8e-40
Identity = 91/106 (85.85%), Postives = 91/106 (85.85%), Query Frame = 0 

Query: 1   MALYGCALVSPIAVSPAKITSFNGFHYPPFSSFPPFVKPFVNSTLTSSFIYRATPIPASY 60
           MA YGCALVS I VSPAKITSFNG HYP FS FP FVKP VN TLTSS IYRATPI ASY
Sbjct: 1   MAPYGCALVSAIEVSPAKITSFNGLHYPTFSLFPSFVKPLVNCTLTSSVIYRATPITASY 60

Query: 61  VYPEPIPEFAEVETQKFKEQLSNKLAKHHETFGNDLDSVVDVCSKL 107
           VYPEPIPEFAEVETQKFKEQLS KLAK  ETFGND DSVVDVCSKL
Sbjct: 61  VYPEPIPEFAEVETQKFKEQLSKKLAKDRETFGNDFDSVVDVCSKL 106

[Close]
BLAST of Clc05G27340 vs. NCBI nr
Match: XP_008446243.1 (PREDICTED: uncharacterized protein LOC103489034 isoform X1 [Cucumis melo] >KAA0034339.1 uncharacterized protein E6C27_scaffold65G003420 [Cucumis melo var. makuwa] >TYK15580.1 uncharacterized protein E5676_scaffold35G00740 [Cucumis melo var. makuwa])

HSP 1 Score: 176.8 bits (447), Expect = 3.1e-40
Identity = 90/106 (84.91%), Postives = 91/106 (85.85%), Query Frame = 0 

Query: 1   MALYGCALVSPIAVSPAKITSFNGFHYPPFSSFPPFVKPFVNSTLTSSFIYRATPIPASY 60
           MA YGCALVS I VSPAKITSFNG HYP FS FP FVKP VN TLTSS IYRATPI ASY
Sbjct: 1   MAPYGCALVSAIEVSPAKITSFNGLHYPTFSLFPSFVKPLVNCTLTSSVIYRATPITASY 60

Query: 61  VYPEPIPEFAEVETQKFKEQLSNKLAKHHETFGNDLDSVVDVCSKL 107
           VYPEPIPEFAEVETQKFKEQLS KLAK  ETFGND DSVVDVCSK+
Sbjct: 61  VYPEPIPEFAEVETQKFKEQLSKKLAKDRETFGNDFDSVVDVCSKI 106

[Close]
BLAST of Clc05G27340 vs. NCBI nr
Match: XP_008446244.1 (PREDICTED: uncharacterized protein LOC103489034 isoform X2 [Cucumis melo])

HSP 1 Score: 176.0 bits (445), Expect = 5.2e-40
Identity = 90/105 (85.71%), Postives = 90/105 (85.71%), Query Frame = 0 

Query: 1   MALYGCALVSPIAVSPAKITSFNGFHYPPFSSFPPFVKPFVNSTLTSSFIYRATPIPASY 60
           MA YGCALVS I VSPAKITSFNG HYP FS FP FVKP VN TLTSS IYRATPI ASY
Sbjct: 1   MAPYGCALVSAIEVSPAKITSFNGLHYPTFSLFPSFVKPLVNCTLTSSVIYRATPITASY 60

Query: 61  VYPEPIPEFAEVETQKFKEQLSNKLAKHHETFGNDLDSVVDVCSK 106
           VYPEPIPEFAEVETQKFKEQLS KLAK  ETFGND DSVVDVCSK
Sbjct: 61  VYPEPIPEFAEVETQKFKEQLSKKLAKDRETFGNDFDSVVDVCSK 105

[Close]
BLAST of Clc05G27340 vs. NCBI nr
Match: XP_011655644.1 (uncharacterized protein LOC101211725 isoform X2 [Cucumis sativus])

HSP 1 Score: 167.2 bits (422), Expect = 2.4e-37
Identity = 86/106 (81.13%), Postives = 87/106 (82.08%), Query Frame = 0 

Query: 1   MALYGCALVSPIAVSPAKITSFNGFHYPPFSSFPPFVKPFVNSTLTSSFIYRATPIPASY 60
           MA YG ALVS + VSPAKI  FNG HYP F  FP FVKP VN TLTSS IYRATPI ASY
Sbjct: 1   MARYGGALVSAVEVSPAKIAGFNGLHYPTFFLFPSFVKPLVNCTLTSSVIYRATPITASY 60

Query: 61  VYPEPIPEFAEVETQKFKEQLSNKLAKHHETFGNDLDSVVDVCSKL 107
           VYPEPIPEFAEVETQKFKEQLS KLAK  ETFGND DSVVDVCSKL
Sbjct: 61  VYPEPIPEFAEVETQKFKEQLSKKLAKDRETFGNDFDSVVDVCSKL 106

[Close]
BLAST of Clc05G27340 vs. ExPASy Swiss-Prot
Match: Q9XIK0 (Protein PLASTID REDOX INSENSITIVE 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PRIN2 PE=1 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.4e-06
Identity = 30/71 (42.25%), Postives = 48/71 (67.61%), Query Frame = 0 

Query: 37  VKPFVNSTLT-SSFIYRATPIPASYVYPEPIPEFAEVETQKFKEQLSNKLAKHHETFGND 96
           V+ F  S+L+   F+ RA    A Y +P+PIPEFAE ET+KF++ + NKL+K  + F + 
Sbjct: 53  VRDFSLSSLSRRGFVCRA----AEYKFPDPIPEFAEAETEKFRDHMLNKLSK-RDLFEDS 112

Query: 97  LDSVVDVCSKL 107
           +D +V VC+++
Sbjct: 113 VDEIVGVCTEI 118

[Close]
BLAST of Clc05G27340 vs. ExPASy Swiss-Prot
Match: B6UFC7 (Protein PLASTID REDOX INSENSITIVE 2, chloroplastic OS=Zea mays OX=4577 GN=PRIN2 PE=2 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 4.3e-05
Identity = 22/48 (45.83%), Postives = 36/48 (75.00%), Query Frame = 0 

Query: 60  YVYPEPIPEFAEVETQKFKEQLSNKL-AKHHETFGNDLDSVVDVCSKL 107
           Y +P+PIPEFAE ET KF+E ++ +L  K  + FG+ ++ +VDVC+++
Sbjct: 65  YKFPDPIPEFAEQETSKFREHMAWRLEQKKEDYFGDHVEEIVDVCTEI 112

[Close]
BLAST of Clc05G27340 vs. ExPASy Swiss-Prot
Match: Q6H612 (Protein PLASTID REDOX INSENSITIVE 2, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=PRIN2 PE=2 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 2.8e-04
Identity = 22/48 (45.83%), Postives = 33/48 (68.75%), Query Frame = 0 

Query: 60  YVYPEPIPEFAEVETQKFKEQLSNKL-AKHHETFGNDLDSVVDVCSKL 107
           Y +P+PIPEFA  ET KFKE +  +L  K  + FG  ++ +VDVC+++
Sbjct: 64  YKFPDPIPEFAAQETSKFKEHMMWRLEQKKDDYFGEHVEEIVDVCTEI 111

[Close]
BLAST of Clc05G27340 vs. ExPASy TrEMBL
Match: A0A1S3BF95 (uncharacterized protein LOC103489034 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103489034 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 8.7e-41
Identity = 91/106 (85.85%), Postives = 91/106 (85.85%), Query Frame = 0 

Query: 1   MALYGCALVSPIAVSPAKITSFNGFHYPPFSSFPPFVKPFVNSTLTSSFIYRATPIPASY 60
           MA YGCALVS I VSPAKITSFNG HYP FS FP FVKP VN TLTSS IYRATPI ASY
Sbjct: 1   MAPYGCALVSAIEVSPAKITSFNGLHYPTFSLFPSFVKPLVNCTLTSSVIYRATPITASY 60

Query: 61  VYPEPIPEFAEVETQKFKEQLSNKLAKHHETFGNDLDSVVDVCSKL 107
           VYPEPIPEFAEVETQKFKEQLS KLAK  ETFGND DSVVDVCSKL
Sbjct: 61  VYPEPIPEFAEVETQKFKEQLSKKLAKDRETFGNDFDSVVDVCSKL 106

[Close]
BLAST of Clc05G27340 vs. ExPASy TrEMBL
Match: A0A5A7SZ04 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G00740 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 1.5e-40
Identity = 90/106 (84.91%), Postives = 91/106 (85.85%), Query Frame = 0 

Query: 1   MALYGCALVSPIAVSPAKITSFNGFHYPPFSSFPPFVKPFVNSTLTSSFIYRATPIPASY 60
           MA YGCALVS I VSPAKITSFNG HYP FS FP FVKP VN TLTSS IYRATPI ASY
Sbjct: 1   MAPYGCALVSAIEVSPAKITSFNGLHYPTFSLFPSFVKPLVNCTLTSSVIYRATPITASY 60

Query: 61  VYPEPIPEFAEVETQKFKEQLSNKLAKHHETFGNDLDSVVDVCSKL 107
           VYPEPIPEFAEVETQKFKEQLS KLAK  ETFGND DSVVDVCSK+
Sbjct: 61  VYPEPIPEFAEVETQKFKEQLSKKLAKDRETFGNDFDSVVDVCSKI 106

[Close]
BLAST of Clc05G27340 vs. ExPASy TrEMBL
Match: A0A1S3BEK8 (uncharacterized protein LOC103489034 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103489034 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 1.5e-40
Identity = 90/106 (84.91%), Postives = 91/106 (85.85%), Query Frame = 0 

Query: 1   MALYGCALVSPIAVSPAKITSFNGFHYPPFSSFPPFVKPFVNSTLTSSFIYRATPIPASY 60
           MA YGCALVS I VSPAKITSFNG HYP FS FP FVKP VN TLTSS IYRATPI ASY
Sbjct: 1   MAPYGCALVSAIEVSPAKITSFNGLHYPTFSLFPSFVKPLVNCTLTSSVIYRATPITASY 60

Query: 61  VYPEPIPEFAEVETQKFKEQLSNKLAKHHETFGNDLDSVVDVCSKL 107
           VYPEPIPEFAEVETQKFKEQLS KLAK  ETFGND DSVVDVCSK+
Sbjct: 61  VYPEPIPEFAEVETQKFKEQLSKKLAKDRETFGNDFDSVVDVCSKI 106

[Close]
BLAST of Clc05G27340 vs. ExPASy TrEMBL
Match: A0A1S3BEL0 (uncharacterized protein LOC103489034 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103489034 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 2.5e-40
Identity = 90/105 (85.71%), Postives = 90/105 (85.71%), Query Frame = 0 

Query: 1   MALYGCALVSPIAVSPAKITSFNGFHYPPFSSFPPFVKPFVNSTLTSSFIYRATPIPASY 60
           MA YGCALVS I VSPAKITSFNG HYP FS FP FVKP VN TLTSS IYRATPI ASY
Sbjct: 1   MAPYGCALVSAIEVSPAKITSFNGLHYPTFSLFPSFVKPLVNCTLTSSVIYRATPITASY 60

Query: 61  VYPEPIPEFAEVETQKFKEQLSNKLAKHHETFGNDLDSVVDVCSK 106
           VYPEPIPEFAEVETQKFKEQLS KLAK  ETFGND DSVVDVCSK
Sbjct: 61  VYPEPIPEFAEVETQKFKEQLSKKLAKDRETFGNDFDSVVDVCSK 105

[Close]
BLAST of Clc05G27340 vs. ExPASy TrEMBL
Match: A0A6J1JDH3 (protein PLASTID REDOX INSENSITIVE 2, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111485796 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 3.3e-32
Identity = 78/106 (73.58%), Postives = 83/106 (78.30%), Query Frame = 0 

Query: 1   MALYGCALVSPIAVSPAKITSFNGFHYPPFSSFPPFVKPFVNSTLTSSFIYRATPIPASY 60
           MA Y C LVS IAVSPAK T FNG +YP FS      KPFVN TLTSS IYRATP  AS 
Sbjct: 1   MASYSCVLVSAIAVSPAKTTCFNGLNYPTFSPSSSLGKPFVNCTLTSSIIYRATPATASC 60

Query: 61  VYPEPIPEFAEVETQKFKEQLSNKLAKHHETFGNDLDSVVDVCSKL 107
           VY +PIPEFAEVET+KFKEQLS KLAK  ETFGNDLDSVV+VCSK+
Sbjct: 61  VYHDPIPEFAEVETRKFKEQLSKKLAKDRETFGNDLDSVVEVCSKI 106

[Close]
BLAST of Clc05G27340 vs. TAIR 10
Match: AT1G10522.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 24 Blast hits to 24 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 55.5 bits (132), Expect = 9.6e-08
Identity = 30/71 (42.25%), Postives = 48/71 (67.61%), Query Frame = 0 

Query: 37  VKPFVNSTLT-SSFIYRATPIPASYVYPEPIPEFAEVETQKFKEQLSNKLAKHHETFGND 96
           V+ F  S+L+   F+ RA    A Y +P+PIPEFAE ET+KF++ + NKL+K  + F + 
Sbjct: 53  VRDFSLSSLSRRGFVCRA----AEYKFPDPIPEFAEAETEKFRDHMLNKLSK-RDLFEDS 112

Query: 97  LDSVVDVCSKL 107
           +D +V VC+++
Sbjct: 113 VDEIVGVCTEI 118

[Close]
BLAST of Clc05G27340 vs. TAIR 10
Match: AT1G10522.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 24 Blast hits to 24 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 55.5 bits (132), Expect = 9.6e-08
Identity = 30/71 (42.25%), Postives = 48/71 (67.61%), Query Frame = 0 

Query: 37  VKPFVNSTLT-SSFIYRATPIPASYVYPEPIPEFAEVETQKFKEQLSNKLAKHHETFGND 96
           V+ F  S+L+   F+ RA    A Y +P+PIPEFAE ET+KF++ + NKL+K  + F + 
Sbjct: 53  VRDFSLSSLSRRGFVCRA----AEYKFPDPIPEFAEAETEKFRDHMLNKLSK-RDLFEDS 112

Query: 97  LDSVVDVCSKL 107
           +D +V VC+++
Sbjct: 113 VDEIVGVCTEI 118

The following BLAST results are available for this feature:
BLAST of Clc05G27340 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038891536.15.1e-4388.68protein PLASTID REDOX INSENSITIVE 2, chloroplastic-like [Benincasa hispida][more]
XP_008446245.11.8e-4085.85PREDICTED: uncharacterized protein LOC103489034 isoform X3 [Cucumis melo][more]
XP_008446243.13.1e-4084.91PREDICTED: uncharacterized protein LOC103489034 isoform X1 [Cucumis melo] >KAA00... [more]
XP_008446244.15.2e-4085.71PREDICTED: uncharacterized protein LOC103489034 isoform X2 [Cucumis melo][more]
XP_011655644.12.4e-3781.13uncharacterized protein LOC101211725 isoform X2 [Cucumis sativus][more]
BLAST of Clc05G27340 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9XIK01.4e-0642.25Protein PLASTID REDOX INSENSITIVE 2, chloroplastic OS=Arabidopsis thaliana OX=37... [more]
B6UFC74.3e-0545.83Protein PLASTID REDOX INSENSITIVE 2, chloroplastic OS=Zea mays OX=4577 GN=PRIN2 ... [more]
Q6H6122.8e-0445.83Protein PLASTID REDOX INSENSITIVE 2, chloroplastic OS=Oryza sativa subsp. japoni... [more]
BLAST of Clc05G27340 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3BF958.7e-4185.85uncharacterized protein LOC103489034 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A5A7SZ041.5e-4084.91Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3BEK81.5e-4084.91uncharacterized protein LOC103489034 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A1S3BEL02.5e-4085.71uncharacterized protein LOC103489034 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A6J1JDH33.3e-3273.58protein PLASTID REDOX INSENSITIVE 2, chloroplastic-like isoform X1 OS=Cucurbita ... [more]
BLAST of Clc05G27340 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G10522.19.6e-0842.25unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT1G10522.29.6e-0842.25unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35987:SF3PROTEIN PLASTID REDOX INSENSITIVE 2, CHLOROPLASTIC-LIKEcoord: 1..107
IPR039349Protein PLASTID REDOX INSENSITIVE 2PANTHERPTHR35987PROTEIN PLASTID REDOX INSENSITIVE 2, CHLOROPLASTIC-RELATEDcoord: 1..107

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc05G27340.2Clc05G27340.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010468 regulation of gene expression