Clc05G24880 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GCATAATCGGCGCTTTTTAGTAGCATCCACAGAAACCAAAAAACGTGTCACAAAATTAAAACTAATTTTTTTTGAAAAAAATAAATAAATAAATGAAAAAAGAAAATGAAAGCAAAGCCCTGAAACGAAAATTAAAAAGCCCACCTCTCAAACCCGGAGTCTCCTTTTGTATATAATCTGGCGTTTTCCGGCGGTATTCCGTTTGCGCAACCTAAGTATTATGAAGAATTTCACCAACCAATGGACCCTCAAAAATTTCTCTGAGTTTTCCATATTTTCTCCCCCGATATTGTTTTAGCCCAACCGATCTGATCTCAGCCCCTCCATTCTCTGTCGGCGAGGTTATGGTTTGTGCCGATTCCGAACAAACACCACTAAACTCCATGGCGATGGGACTCGAGAGATCGAAGCCGCTTCACAATTTCACCCTCCCCTTCTTGAAGTGGGGAAATCAGAGGTATCTCCGTTGTATGAAATTAGACTCCGATGCCCCTCACACCGACGACGACGACGACCTTCCACCGCCAGTCGATCGCCGCCCATCTCCCGCTCTCCGGTGGAACTGCCGGAAGTTTAACACGGACAGGCCGGCGTTGTTTAAGGATTCCGCTAAGAGACTTAGGGCTTCTAAGTCCAAGATCCACGATAATTACGATGGCGATGAAGATATAGCGGCGGTGAGAGAGAAACTCATGATTGATCTAAAAACCGCTGCCGATAGAATGAAGGTTGCATTCTGGAGAGATGGAGTGGTCGACGATGACGATGAGGATGACGACGATATGACTACCCCGGAGAAAAAAATTCCGGCGGCGCCGCCGGCGGCGTCGGTGCCGGCGCCGGCACCGGAGAAGGAGTTAAGACCGTGGAGTTTGAGGGTGAGGAAGGCGGCGTCGAAGGCTCCGATTGATACAATTCCCGAAGGTAAAGGCGGTGGTGGTAAAGTGTTGAAGATCGAGAAGAGGTCGGAGAAAAAGGCGATTCGAAATTCTCCGTTGAGAAGCGGTGACGGCGGCGGTAGCGTGAAGTCGTCAGGGCGGCGATTGGTAACGGAGAAGAAGGAAAGGGAGAAATTCTCGGTATCACTTTCCAAAAAGGAGATCGAAGAGGATTTCATGGCTATGATTGAACGTAGGCCGCCGCGAAGGCCCAAAAAGAGGCCCAGAATTGTACAAAATCAAATGGATGTAGGGTTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGTTTTTTTTTTAACCTTTTTAATCTTCTCTGAAATTGGGTTTTCAACTCTTCCTCCCTCCCCATTGCAGACGCTTTTCCCCGGATTATGGTTGTCGGAGATCACCGCCGATCTCTACGAGGTGCCGGAAATCCAAGAAAACGGAAAGGTATTTTCCCGGCGGTCGCCCTGTTTTTTTTCGTACGGATAACAAATCTGATTGAATGAAATCCCCTCCATATTCGATCTAGCTTCGTTTAAATAACCCCCCATCTGAAATCAATTCGTATGATCGGAATCTTATGTTATGTTGTTGAAACTTAATCACACATTTTGTGGGAATTGATTATGCAGAGATAGTAACCGGACCCCAATCGCCTTAGAAGTTAGACAACCGGCCGGCAACTTGCGACGCTGCTAAGCTAAATCCATGGATGAGGACGTACAACGAAGCTCCATCTTCTGGAATCGAGAAATAATTGCACATTGATATCCAGTAGATTTGTGTGTTGTGTGTTTTTGATTCCATGGCTCTGAGAACGCTAATTCTTGTGTATTAATTATAATTACATTTCATTCTTGTGTGTTTTGCTGAATAAAGAATAATGTTTTTAGTGGAAAAAGAAAAAAAAAGAAAAAAGAAAAAGAAGAAGAAAGAATGCACAAATTGATTTGTTGGTTTCTGTGATTATAGATCCAAAATGAATCCTAAATTCATAAAGATATGAATGATTTGTGTTTGTTGGGGTTGAAGAAAGTGCAGAGCGGTGGTTTAATTCATAGATATATATATATATATATAATATTTGTTTAATAGCTTAATGGTAGAATAGGTGCCAGTTGGTATTGAATTCCTCCGCCGTGGCGTTTTGGCCTTGCTTCTTTCATAGACAAGTTTACATGTGGACAAAATCTATTATATTTTTATCAATTATTTTTTCTCTCTAAATTTCCCATTCTTAATGGGAGAATGAGTTGCTTTGATTTGTTTCAGAAATTTTCATTTTTACATTTTTCTAAA GCATAATCGGCGCTTTTTAGTAGCATCCACAGAAACCAAAAAACGTGTCACAAAATTAAAACTAATTTTTTTTGAAAAAAATAAATAAATAAATGAAAAAAGAAAATGAAAGCAAAGCCCTGAAACGAAAATTAAAAAGCCCACCTCTCAAACCCGGAGTCTCCTTTTGTATATAATCTGGCGTTTTCCGGCGGTATTCCGTTTGCGCAACCTAAGTATTATGAAGAATTTCACCAACCAATGGACCCTCAAAAATTTCTCTGAGTTTTCCATATTTTCTCCCCCGATATTGTTTTAGCCCAACCGATCTGATCTCAGCCCCTCCATTCTCTGTCGGCGAGGTTATGGTTTGTGCCGATTCCGAACAAACACCACTAAACTCCATGGCGATGGGACTCGAGAGATCGAAGCCGCTTCACAATTTCACCCTCCCCTTCTTGAAGTGGGGAAATCAGAGGTATCTCCGTTGTATGAAATTAGACTCCGATGCCCCTCACACCGACGACGACGACGACCTTCCACCGCCAGTCGATCGCCGCCCATCTCCCGCTCTCCGGTGGAACTGCCGGAAGTTTAACACGGACAGGCCGGCGTTGTTTAAGGATTCCGCTAAGAGACTTAGGGCTTCTAAGTCCAAGATCCACGATAATTACGATGGCGATGAAGATATAGCGGCGGTGAGAGAGAAACTCATGATTGATCTAAAAACCGCTGCCGATAGAATGAAGGTTGCATTCTGGAGAGATGGAGTGGTCGACGATGACGATGAGGATGACGACGATATGACTACCCCGGAGAAAAAAATTCCGGCGGCGCCGCCGGCGGCGTCGGTGCCGGCGCCGGCACCGGAGAAGGAGTTAAGACCGTGGAGTTTGAGGGTGAGGAAGGCGGCGTCGAAGGCTCCGATTGATACAATTCCCGAAGGTAAAGGCGGTGGTGGTAAAGTGTTGAAGATCGAGAAGAGGTCGGAGAAAAAGGCGATTCGAAATTCTCCGTTGAGAAGCGGTGACGGCGGCGGTAGCGTGAAGTCGTCAGGGCGGCGATTGGTAACGGAGAAGAAGGAAAGGGAGAAATTCTCGGTATCACTTTCCAAAAAGGAGATCGAAGAGGATTTCATGGCTATGATTGAACGTAGGCCGCCGCGAAGGCCCAAAAAGAGGCCCAGAATTGTACAAAATCAAATGGATACGCTTTTCCCCGGATTATGGTTGTCGGAGATCACCGCCGATCTCTACGAGGTGCCGGAAATCCAAGAAAACGGAAAGCTTCGTTTAAATAACCCCCCATCTGAAATCAATTCAGATAGTAACCGGACCCCAATCGCCTTAGAAGTTAGACAACCGGCCGGCAACTTGCGACGCTGCTAAGCTAAATCCATGGATGAGGACGTACAACGAAGCTCCATCTTCTGGAATCGAGAAATAATTGCACATTGATATCCAGTAGATTTGTGTGTTGTGTGTTTTTGATTCCATGGCTCTGAGAACGCTAATTCTTGTGTATTAATTATAATTACATTTCATTCTTGTGTGTTTTGCTGAATAAAGAATAATGTTTTTAGTGGAAAAAGAAAAAAAAAGAAAAAAGAAAAAGAAGAAGAAAGAATGCACAAATTGATTTGTTGGTTTCTGTGATTATAGATCCAAAATGAATCCTAAATTCATAAAGATATGAATGATTTGTGTTTGTTGGGGTTGAAGAAAGTGCAGAGCGGTGGTTTAATTCATAGATATATATATATATATATAATATTTGTTTAATAGCTTAATGGTAGAATAGGTGCCAGTTGGTATTGAATTCCTCCGCCGTGGCGTTTTGGCCTTGCTTCTTTCATAGACAAGTTTACATGTGGACAAAATCTATTATATTTTTATCAATTATTTTTTCTCTCTAAATTTCCCATTCTTAATGGGAGAATGAGTTGCTTTGATTTGTTTCAGAAATTTTCATTTTTACATTTTTCTAAA ATGGTTTGTGCCGATTCCGAACAAACACCACTAAACTCCATGGCGATGGGACTCGAGAGATCGAAGCCGCTTCACAATTTCACCCTCCCCTTCTTGAAGTGGGGAAATCAGAGGTATCTCCGTTGTATGAAATTAGACTCCGATGCCCCTCACACCGACGACGACGACGACCTTCCACCGCCAGTCGATCGCCGCCCATCTCCCGCTCTCCGGTGGAACTGCCGGAAGTTTAACACGGACAGGCCGGCGTTGTTTAAGGATTCCGCTAAGAGACTTAGGGCTTCTAAGTCCAAGATCCACGATAATTACGATGGCGATGAAGATATAGCGGCGGTGAGAGAGAAACTCATGATTGATCTAAAAACCGCTGCCGATAGAATGAAGGTTGCATTCTGGAGAGATGGAGTGGTCGACGATGACGATGAGGATGACGACGATATGACTACCCCGGAGAAAAAAATTCCGGCGGCGCCGCCGGCGGCGTCGGTGCCGGCGCCGGCACCGGAGAAGGAGTTAAGACCGTGGAGTTTGAGGGTGAGGAAGGCGGCGTCGAAGGCTCCGATTGATACAATTCCCGAAGGTAAAGGCGGTGGTGGTAAAGTGTTGAAGATCGAGAAGAGGTCGGAGAAAAAGGCGATTCGAAATTCTCCGTTGAGAAGCGGTGACGGCGGCGGTAGCGTGAAGTCGTCAGGGCGGCGATTGGTAACGGAGAAGAAGGAAAGGGAGAAATTCTCGGTATCACTTTCCAAAAAGGAGATCGAAGAGGATTTCATGGCTATGATTGAACGTAGGCCGCCGCGAAGGCCCAAAAAGAGGCCCAGAATTGTACAAAATCAAATGGATACGCTTTTCCCCGGATTATGGTTGTCGGAGATCACCGCCGATCTCTACGAGGTGCCGGAAATCCAAGAAAACGGAAAGCTTCGTTTAAATAACCCCCCATCTGAAATCAATTCAGATAGTAACCGGACCCCAATCGCCTTAGAAGTTAGACAACCGGCCGGCAACTTGCGACGCTGCTAA MVCADSEQTPLNSMAMGLERSKPLHNFTLPFLKWGNQRYLRCMKLDSDAPHTDDDDDLPPPVDRRPSPALRWNCRKFNTDRPALFKDSAKRLRASKSKIHDNYDGDEDIAAVREKLMIDLKTAADRMKVAFWRDGVVDDDDEDDDDMTTPEKKIPAAPPAASVPAPAPEKELRPWSLRVRKAASKAPIDTIPEGKGGGGKVLKIEKRSEKKAIRNSPLRSGDGGGSVKSSGRRLVTEKKEREKFSVSLSKKEIEEDFMAMIERRPPRRPKKRPRIVQNQMDTLFPGLWLSEITADLYEVPEIQENGKLRLNNPPSEINSDSNRTPIALEVRQPAGNLRRC Homology
BLAST of Clc05G24880 vs. NCBI nr
Match: XP_038891330.1 (uncharacterized protein LOC120080775 [Benincasa hispida]) HSP 1 Score: 573.9 bits (1478), Expect = 9.0e-160 Identity = 293/308 (95.13%), Postives = 298/308 (96.75%), Query Frame = 0
BLAST of Clc05G24880 vs. NCBI nr
Match: KAA0034568.1 (acyl-acyl carrier protein thioesterase ATL3 [Cucumis melo var. makuwa]) HSP 1 Score: 569.3 bits (1466), Expect = 2.2e-158 Identity = 291/315 (92.38%), Postives = 298/315 (94.60%), Query Frame = 0
BLAST of Clc05G24880 vs. NCBI nr
Match: TYK09120.1 (acyl-acyl carrier protein thioesterase ATL3 [Cucumis melo var. makuwa]) HSP 1 Score: 569.3 bits (1466), Expect = 2.2e-158 Identity = 291/315 (92.38%), Postives = 298/315 (94.60%), Query Frame = 0
BLAST of Clc05G24880 vs. NCBI nr
Match: XP_008446612.1 (PREDICTED: uncharacterized protein LOC103489295 [Cucumis melo]) HSP 1 Score: 567.8 bits (1462), Expect = 6.4e-158 Identity = 289/309 (93.53%), Postives = 295/309 (95.47%), Query Frame = 0
BLAST of Clc05G24880 vs. NCBI nr
Match: KAE8648792.1 (hypothetical protein Csa_009266 [Cucumis sativus]) HSP 1 Score: 558.9 bits (1439), Expect = 3.0e-155 Identity = 294/338 (86.98%), Postives = 305/338 (90.24%), Query Frame = 0
BLAST of Clc05G24880 vs. ExPASy TrEMBL
Match: A0A5A7SVA0 (Acyl-acyl carrier protein thioesterase ATL3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G005840 PE=4 SV=1) HSP 1 Score: 569.3 bits (1466), Expect = 1.1e-158 Identity = 291/315 (92.38%), Postives = 298/315 (94.60%), Query Frame = 0
BLAST of Clc05G24880 vs. ExPASy TrEMBL
Match: A0A5D3CCR4 (Acyl-acyl carrier protein thioesterase ATL3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G001110 PE=4 SV=1) HSP 1 Score: 569.3 bits (1466), Expect = 1.1e-158 Identity = 291/315 (92.38%), Postives = 298/315 (94.60%), Query Frame = 0
BLAST of Clc05G24880 vs. ExPASy TrEMBL
Match: A0A1S3BFG7 (uncharacterized protein LOC103489295 OS=Cucumis melo OX=3656 GN=LOC103489295 PE=4 SV=1) HSP 1 Score: 567.8 bits (1462), Expect = 3.1e-158 Identity = 289/309 (93.53%), Postives = 295/309 (95.47%), Query Frame = 0
BLAST of Clc05G24880 vs. ExPASy TrEMBL
Match: A0A0A0KT80 (4HBT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G609800 PE=4 SV=1) HSP 1 Score: 558.9 bits (1439), Expect = 1.4e-155 Identity = 294/338 (86.98%), Postives = 305/338 (90.24%), Query Frame = 0
BLAST of Clc05G24880 vs. ExPASy TrEMBL
Match: A0A6J1GYM5 (uncharacterized protein LOC111458463 OS=Cucurbita moschata OX=3662 GN=LOC111458463 PE=4 SV=1) HSP 1 Score: 490.7 bits (1262), Expect = 4.8e-135 Identity = 259/309 (83.82%), Postives = 277/309 (89.64%), Query Frame = 0
BLAST of Clc05G24880 vs. TAIR 10
Match: AT1G25370.1 (Protein of unknown function (DUF1639) ) HSP 1 Score: 136.3 bits (342), Expect = 4.4e-32 Identity = 111/291 (38.14%), Postives = 155/291 (53.26%), Query Frame = 0
BLAST of Clc05G24880 vs. TAIR 10
Match: AT3G18295.1 (Protein of unknown function (DUF1639) ) HSP 1 Score: 132.5 bits (332), Expect = 6.4e-31 Identity = 108/289 (37.37%), Postives = 145/289 (50.17%), Query Frame = 0
BLAST of Clc05G24880 vs. TAIR 10
Match: AT1G68340.1 (Protein of unknown function (DUF1639) ) HSP 1 Score: 127.1 bits (318), Expect = 2.7e-29 Identity = 106/291 (36.43%), Postives = 146/291 (50.17%), Query Frame = 0
BLAST of Clc05G24880 vs. TAIR 10
Match: AT1G48770.1 (Protein of unknown function (DUF1639) ) HSP 1 Score: 94.0 bits (232), Expect = 2.5e-19 Identity = 84/281 (29.89%), Postives = 115/281 (40.93%), Query Frame = 0
BLAST of Clc05G24880 vs. TAIR 10
Match: AT3G60410.1 (Protein of unknown function (DUF1639) ) HSP 1 Score: 73.6 bits (179), Expect = 3.5e-13 Identity = 87/297 (29.29%), Postives = 128/297 (43.10%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
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