Clc05G24410 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc05G24410
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	DNA repair REX1-B protein
Location	ClcChr05: 32387081 .. 32389377 (+)
RNA-Seq Expression	Clc05G24410
Synteny	Clc05G24410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGATTTTAAGAAGAAGCTCTCTCTGGATGAACAAATGGAGGAAGACCAAAGAACCGATACTACCGATTCCTCCGATTCCTCCAACACTCTCAGTTTGCTCCGCAAGTTTCTTGAAATCCAGCAGCGTAGAGCGGAAGCTTATGCCAAGCTTAAAAGGTACCATTGATTTTTGTTTTCGTTTTCGTTTTCGTTTTCGTTTTCGTTTGAAATCTTGATCGTTGTTTTCGAAAACAAATGAAGAATCCGATGGTTAAAGTTATATGTATGTGTACAACTTCGTTATAGTTTTCTTTCATACCGCAGGATTTTGTCCTAAACCTTGTTTAAGGAACATTTTCTTTCATAGTGATTCCATACGGATCGATGATTAGAAAATACTAAACGAATTTGTGTTATTCTTAGTCCTAAACGAGCTTAGCGACAAAGTTACGAGTGTGTTTTTGCTAATAGTTTATACAAGTCGGATGGAATTTTGTTAATTCGCAGGGGGTTCGATGAGTATATGACTTCAGGAAGGGAGATATCTTACCAACAGCTATGCAGTGAGATCACTATGGAATTCAGTAATTGCTCCAAACAAGTTCGTTACACAATTTTCACAGCAGGTCGTTTAGGCGTATTATTCTTTGAGCTTCCTTGTGAGATTTTCCTTTTTGGACTCTATTTTGTTGTAGGTTATTGACATTGAATCGAACTTCCGGAGTCCAGATCATAACAGGCTTGAGCTAGCCAACCTTCTTAGATCTGTTCAAGAACAAGAAAAGCAGAAATTGCACCTGGTATATGCCACGTCCAGAAAGTTCTCTAGAAAGTTTTGGATTTATTTTGTTGCAGCATCCTTTCCTCATCTGCATAGATTAAGTTTGGAGAGTAGTATAATTTTAAACTTAAAAACCATTCCGTGCTTTCATACAATCCCAACTAGTCAGTTAAACTTGTAATTCTAAAAATTAGTAGGATTGATCAGTATATCATATATGCTTTGGAAAATAAGCAATAAATGTTATCACGTTAAGACAATCCTCAAGGCGTAAGGTACAAAGGACCTCTGAATCATTGTTCAGAAGCAGAAACTCTGCCTATTGGTAAAATCTAGATTATGTAAAGCATCACTCCAAAGTCGAACCTCTCCTTAATTCTAGTGACTTGAAGTAAGATGACCACTTGGTTCACATTTTCTGGATTCTAGATTTTGTCTTTAAGTATCATTTCTTTTTGACAGTTGAATGGTTTATCTTCTGTATGTACTCCAGTGAAGATTATTAATAGAAATATTGAGATAACCCTTTGCATCAATGGATATATGACCTCGATGCTTACAACAATACGCTTGATTCCTAGTCTCTCTAATCTCTATTTTATTTGTGGATTCCTTAACTGTGCCTGTCATGTCTTAACAAGAAAGTCACCTCAACTGGATTTGAGTGATCGCTCTTCAATATTCTTCAATGATGCACCGGTTTTCCTTTTAACTCTATATCTGAGGAACAAAATGATTCTACTATGTTATCCACTGCTCATCGGATGATCATTTTCTGTTTTTAAAAAGCAGCAGTAGTGGAACTTTTCTAGATTTGGAATGGCACCTTGATTTCTCTTTTTTCCTTTTTCCACTTAACTGCAGAACTCAATGTTGTAAATTTTCAGTTAACTACCTAAGATCTTCAGTAGTGGTATGTAGCTTATCTTTGAATGCTTGCACACTTGTCTATAGCCACAAGTTTGAAGAAATCTTGGCAATGAATGTGCTTTTGTTCGACATAAAGTTTAGTAGTCAAGTGATCTTGGATTATTTCTATTATTTCTTTAAAGACAGCTCAAATTCAGTTATTGAAGAAGGCTGGTCGCCCATCAGAGCGCTTGGTGAGCCATGAGAATTGCAGATTCAATGCACCTCGAGAGCACGAGTGTGTGCATGTCCATGAGATAACTGAGGCTTCTGGTACTGAGGAAGCAGAAGCAGATGCCGATTATGACAATGCTCTAAAGGAAGCAATCAAAGGTGTGCAGGATGCTGTGACGACCATAATTGAGCACATGGAGGAAGTGAGATATGAGATTGCAGCTCTTGAAGATAAGTAATCTCGTGACATATATATGATATCTAGAATATCTTGCTCTGCAATTGAATTGCTTACTGAAATACCTATAAATGAAGCAAATCAAGAAAGAATTGACAAAACAAATCAAAGTCTAATTCATTTCATTTCATCTCTATAAAGGTCATTTTCCAGAGTTGCTACAGAGAATAATTTTTTATTTGACTGAATCATATAAACTGAAAGATATTTC

mRNA sequence

ATGGAAGATTTTAAGAAGAAGCTCTCTCTGGATGAACAAATGGAGGAAGACCAAAGAACCGATACTACCGATTCCTCCGATTCCTCCAACACTCTCAGTTTGCTCCGCAAGTTTCTTGAAATCCAGCAGCGTAGAGCGGAAGCTTATGCCAAGCTTAAAAGAATCCGATGGTTAAAGTTATATTCGGATGGAATTTTGTTAATTCGCAGGGGGTTCGATGAGTATATGACTTCAGGAAGGGAGATATCTTACCAACAGCTATGCAGTGAGATCACTATGGAATTCAGTAATTGCTCCAAACAAGTTATTGACATTGAATCGAACTTCCGGAGTCCAGATCATAACAGGCTTGAGCTAGCCAACCTTCTTAGATCTGTTCAAGAACAAGAAAAGCAGAAATTGCACCTGGTATATGCCACGTCCAGAAAGTTCTCTAGAAAGTTTTGGATTTATTTTGTTGCAGCATCCTTTCCTCATCTGCATAGATTAAGTTTGGAGAGTAATTATGTAAAGCATCACTCCAAAGTCGAACCTCTCCTTAATTCTAGTGACTTGAAAACTCAATGTTGTAAATTTTCAGTTAACTACCTAAGATCTTCAGTAGTGACAGCTCAAATTCAGTTATTGAAGAAGGCTGGTCGCCCATCAGAGCGCTTGGTGAGCCATGAGAATTGCAGATTCAATGCACCTCGAGAGCACGAGTGTGTGCATGTCCATGAGATAACTGAGGCTTCTGGTACTGAGGAAGCAGAAGCAGATGCCGATTATGACAATGCTCTAAAGGAAGCAATCAAAGGTGTGCAGGATGCTGTGACGACCATAATTGAGCACATGGAGGAAGTGAGATATGAGATTGCAGCTCTTGAAGATAAGTAATCTCGTGACATATATATGATATCTAGAATATCTTGCTCTGCAATTGAATTGCTTACTGAAATACCTATAAATGAAGCAAATCAAGAAAGAATTGACAAAACAAATCAAAGTCTAATTCATTTCATTTCATCTCTATAAAGGTCATTTTCCAGAGTTGCTACAGAGAATAATTTTTTATTTGACTGAATCATATAAACTGAAAGATATTTC

Coding sequence (CDS)

ATGGAAGATTTTAAGAAGAAGCTCTCTCTGGATGAACAAATGGAGGAAGACCAAAGAACCGATACTACCGATTCCTCCGATTCCTCCAACACTCTCAGTTTGCTCCGCAAGTTTCTTGAAATCCAGCAGCGTAGAGCGGAAGCTTATGCCAAGCTTAAAAGAATCCGATGGTTAAAGTTATATTCGGATGGAATTTTGTTAATTCGCAGGGGGTTCGATGAGTATATGACTTCAGGAAGGGAGATATCTTACCAACAGCTATGCAGTGAGATCACTATGGAATTCAGTAATTGCTCCAAACAAGTTATTGACATTGAATCGAACTTCCGGAGTCCAGATCATAACAGGCTTGAGCTAGCCAACCTTCTTAGATCTGTTCAAGAACAAGAAAAGCAGAAATTGCACCTGGTATATGCCACGTCCAGAAAGTTCTCTAGAAAGTTTTGGATTTATTTTGTTGCAGCATCCTTTCCTCATCTGCATAGATTAAGTTTGGAGAGTAATTATGTAAAGCATCACTCCAAAGTCGAACCTCTCCTTAATTCTAGTGACTTGAAAACTCAATGTTGTAAATTTTCAGTTAACTACCTAAGATCTTCAGTAGTGACAGCTCAAATTCAGTTATTGAAGAAGGCTGGTCGCCCATCAGAGCGCTTGGTGAGCCATGAGAATTGCAGATTCAATGCACCTCGAGAGCACGAGTGTGTGCATGTCCATGAGATAACTGAGGCTTCTGGTACTGAGGAAGCAGAAGCAGATGCCGATTATGACAATGCTCTAAAGGAAGCAATCAAAGGTGTGCAGGATGCTGTGACGACCATAATTGAGCACATGGAGGAAGTGAGATATGAGATTGCAGCTCTTGAAGATAAGTAA

Protein sequence

MEDFKKKLSLDEQMEEDQRTDTTDSSDSSNTLSLLRKFLEIQQRRAEAYAKLKRIRWLKLYSDGILLIRRGFDEYMTSGREISYQQLCSEITMEFSNCSKQVIDIESNFRSPDHNRLELANLLRSVQEQEKQKLHLVYATSRKFSRKFWIYFVAASFPHLHRLSLESNYVKHHSKVEPLLNSSDLKTQCCKFSVNYLRSSVVTAQIQLLKKAGRPSERLVSHENCRFNAPREHECVHVHEITEASGTEEAEADADYDNALKEAIKGVQDAVTTIIEHMEEVRYEIAALEDK

Homology

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BLAST of Clc05G24410 vs. NCBI nr
Match: XP_004135056.1 (uncharacterized protein LOC101210078 [Cucumis sativus] >KGN52147.1 hypothetical protein Csa_009032 [Cucumis sativus])

HSP 1 Score: 322.0 bits (824), Expect = 5.2e-84
Identity = 192/291 (65.98%), Postives = 198/291 (68.04%), Query Frame = 0


Query: 1   MEDFKKKLSLDEQMEEDQRTDTTDSSDSSNTLSLLRKFLEIQQRRAEAYAKLKRIRWLKL 60
           MEDF+KKLSLDEQMEED++T      DSSNTLSLLR+FLEIQQRRAEAY+KLK       
Sbjct: 1   MEDFEKKLSLDEQMEEDRKT------DSSNTLSLLRQFLEIQQRRAEAYSKLK------- 60

Query: 61  YSDGILLIRRGFDEYMTSGREISYQQLCSEITMEFSNCSKQVIDIESNFRSPDHNRLELA 120
                    RGFDEYMTSGREISYQQLCSEIT EFSNCSKQVIDIESNFRS DHNRLELA
Sbjct: 61  ---------RGFDEYMTSGREISYQQLCSEITTEFSNCSKQVIDIESNFRSSDHNRLELA 120

Query: 121 NLLRSVQEQEKQKLHLVYATSRKFSRKFWIYFVAASFPHLHRLSLESNYVKHHSKVEPLL 180
           N LRSVQEQEKQKLHL                                            
Sbjct: 121 NQLRSVQEQEKQKLHL-------------------------------------------- 180

Query: 181 NSSDLKTQCCKFSVNYLRSSVVTAQIQLLKKAGRPSERLVSHENCRFNAPREHECVHVHE 240
                                 TAQIQLLKKAGRPSERLVSHENCRFNAPREHECVHVHE
Sbjct: 181 ----------------------TAQIQLLKKAGRPSERLVSHENCRFNAPREHECVHVHE 203

Query: 241 ITEASGTEEAEADADYDNALKEAIKGVQDAVTTIIEHMEEVRYEIAALEDK 292
           ITEASGTEEAEADA+YDNALKEAIKGVQDAVTTI EHMEEVRYEI ALEDK
Sbjct: 241 ITEASGTEEAEADAEYDNALKEAIKGVQDAVTTINEHMEEVRYEIEALEDK 203

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BLAST of Clc05G24410 vs. NCBI nr
Match: XP_038892275.1 (uncharacterized protein LOC120081463 [Benincasa hispida])

HSP 1 Score: 320.5 bits (820), Expect = 1.5e-83
Identity = 190/291 (65.29%), Postives = 201/291 (69.07%), Query Frame = 0


Query: 1   MEDFKKKLSLDEQMEEDQRTDTTDSSDSSNTLSLLRKFLEIQQRRAEAYAKLKRIRWLKL 60
           MEDF+KKLSLDEQMEEDQR   TD+SDSSNTLSLLR+FLEIQQRRAEAYA+LK       
Sbjct: 1   MEDFEKKLSLDEQMEEDQR---TDASDSSNTLSLLREFLEIQQRRAEAYARLK------- 60

Query: 61  YSDGILLIRRGFDEYMTSGREISYQQLCSEITMEFSNCSKQVIDIESNFRSPDHNRLELA 120
                    RGFDEYMTSGREISYQQLCS+IT EFSNCSKQVIDIESNFRS DHNRLELA
Sbjct: 61  ---------RGFDEYMTSGREISYQQLCSQITTEFSNCSKQVIDIESNFRSSDHNRLELA 120

Query: 121 NLLRSVQEQEKQKLHLVYATSRKFSRKFWIYFVAASFPHLHRLSLESNYVKHHSKVEPLL 180
           NLLRSVQE+EKQKLHL                                            
Sbjct: 121 NLLRSVQEKEKQKLHL-------------------------------------------- 180

Query: 181 NSSDLKTQCCKFSVNYLRSSVVTAQIQLLKKAGRPSERLVSHENCRFNAPREHECVHVHE 240
                                 TAQIQLLKKAGRPSER+VSHENCRFNAPREHECVHVHE
Sbjct: 181 ----------------------TAQIQLLKKAGRPSERVVSHENCRFNAPREHECVHVHE 206

Query: 241 ITEASGTEEAEADADYDNALKEAIKGVQDAVTTIIEHMEEVRYEIAALEDK 292
           +T ASGTEEAEA+A+YDNALKEAIKGVQD VTTI E+MEEVRYEIAALEDK
Sbjct: 241 MTGASGTEEAEAEAEYDNALKEAIKGVQDTVTTINEYMEEVRYEIAALEDK 206

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BLAST of Clc05G24410 vs. NCBI nr
Match: XP_008446706.1 (PREDICTED: uncharacterized protein LOC103489347 [Cucumis melo] >KAA0034618.1 uncharacterized protein E6C27_scaffold65G006350 [Cucumis melo var. makuwa] >TYK09169.1 uncharacterized protein E5676_scaffold475G001610 [Cucumis melo var. makuwa])

HSP 1 Score: 318.2 bits (814), Expect = 7.6e-83
Identity = 190/291 (65.29%), Postives = 197/291 (67.70%), Query Frame = 0


Query: 1   MEDFKKKLSLDEQMEEDQRTDTTDSSDSSNTLSLLRKFLEIQQRRAEAYAKLKRIRWLKL 60
           MEDF+KKLSLDEQMEED+ T      DSSNTLSLLR+FLEIQQRRAEAY+KLK       
Sbjct: 1   MEDFEKKLSLDEQMEEDRGT------DSSNTLSLLRQFLEIQQRRAEAYSKLK------- 60

Query: 61  YSDGILLIRRGFDEYMTSGREISYQQLCSEITMEFSNCSKQVIDIESNFRSPDHNRLELA 120
                    RGFDEYMTSGREISYQQLCSEIT EFSNCSKQVIDIESNFR+ DHNRLELA
Sbjct: 61  ---------RGFDEYMTSGREISYQQLCSEITTEFSNCSKQVIDIESNFRNSDHNRLELA 120

Query: 121 NLLRSVQEQEKQKLHLVYATSRKFSRKFWIYFVAASFPHLHRLSLESNYVKHHSKVEPLL 180
           NLLRSVQEQEKQKLHL                                            
Sbjct: 121 NLLRSVQEQEKQKLHL-------------------------------------------- 180

Query: 181 NSSDLKTQCCKFSVNYLRSSVVTAQIQLLKKAGRPSERLVSHENCRFNAPREHECVHVHE 240
                                 TAQIQLLKKAGRPSERLVSHENCR NAPREHECVHVHE
Sbjct: 181 ----------------------TAQIQLLKKAGRPSERLVSHENCRINAPREHECVHVHE 203

Query: 241 ITEASGTEEAEADADYDNALKEAIKGVQDAVTTIIEHMEEVRYEIAALEDK 292
           ITEASGTEEAEADA+YDNALKEAIKGVQDAVTTI +HMEEVRYEI ALEDK
Sbjct: 241 ITEASGTEEAEADAEYDNALKEAIKGVQDAVTTINDHMEEVRYEIEALEDK 203

[Close]

BLAST of Clc05G24410 vs. NCBI nr
Match: XP_023541138.1 (uncharacterized protein C19orf60 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 315.1 bits (806), Expect = 6.4e-82
Identity = 189/291 (64.95%), Postives = 197/291 (67.70%), Query Frame = 0


Query: 1   MEDFKKKLSLDEQMEEDQRTDTTDSSDSSNTLSLLRKFLEIQQRRAEAYAKLKRIRWLKL 60
           MEDF KKLSL EQMEED RT + DSS SSNTL+LLRKFLEIQQRRAEAYA+LK       
Sbjct: 1   MEDFDKKLSLAEQMEEDGRT-SGDSSGSSNTLTLLRKFLEIQQRRAEAYARLK------- 60

Query: 61  YSDGILLIRRGFDEYMTSGREISYQQLCSEITMEFSNCSKQVIDIESNFRSPDHNRLELA 120
                    RGFDEYMTSGREISYQQLC EIT EFSNCSKQVIDIESNF SPDH+R+ELA
Sbjct: 61  ---------RGFDEYMTSGREISYQQLCGEITAEFSNCSKQVIDIESNFCSPDHDRIELA 120

Query: 121 NLLRSVQEQEKQKLHLVYATSRKFSRKFWIYFVAASFPHLHRLSLESNYVKHHSKVEPLL 180
           +LLRSVQEQEKQKLHL                                            
Sbjct: 121 SLLRSVQEQEKQKLHL-------------------------------------------- 180

Query: 181 NSSDLKTQCCKFSVNYLRSSVVTAQIQLLKKAGRPSERLVSHENCRFNAPREHECVHVHE 240
                                 TAQIQLLKKAGRPSERLVSHENCRF  PREHEC+HVHE
Sbjct: 181 ----------------------TAQIQLLKKAGRPSERLVSHENCRFKTPREHECLHVHE 208

Query: 241 ITEASGTEEAEADADYDNALKEAIKGVQDAVTTIIEHMEEVRYEIAALEDK 292
           ITEASGTEEAEADA+YDNALKEAIKGVQDAVTTI EHMEEVRYEIAALEDK
Sbjct: 241 ITEASGTEEAEADAEYDNALKEAIKGVQDAVTTINEHMEEVRYEIAALEDK 208

[Close]

BLAST of Clc05G24410 vs. NCBI nr
Match: XP_022945518.1 (uncharacterized protein C19orf60 homolog [Cucurbita moschata] >XP_022968603.1 uncharacterized protein C19orf60 homolog [Cucurbita maxima] >KAG6573912.1 Required for excision 1-B domain-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 314.7 bits (805), Expect = 8.4e-82
Identity = 189/291 (64.95%), Postives = 197/291 (67.70%), Query Frame = 0


Query: 1   MEDFKKKLSLDEQMEEDQRTDTTDSSDSSNTLSLLRKFLEIQQRRAEAYAKLKRIRWLKL 60
           MEDF KKLSL EQMEED RT + DSS SSNTL+LLRKFLEIQQRRAEAYA+LK       
Sbjct: 1   MEDFDKKLSLAEQMEEDGRT-SGDSSGSSNTLTLLRKFLEIQQRRAEAYARLK------- 60

Query: 61  YSDGILLIRRGFDEYMTSGREISYQQLCSEITMEFSNCSKQVIDIESNFRSPDHNRLELA 120
                    RGFDEYMTSGREISYQQLC EIT EFSNCSKQVIDIESNF SPDH+R+ELA
Sbjct: 61  ---------RGFDEYMTSGREISYQQLCGEITAEFSNCSKQVIDIESNFCSPDHDRIELA 120

Query: 121 NLLRSVQEQEKQKLHLVYATSRKFSRKFWIYFVAASFPHLHRLSLESNYVKHHSKVEPLL 180
           +LLRSVQEQEKQKLHL                                            
Sbjct: 121 SLLRSVQEQEKQKLHL-------------------------------------------- 180

Query: 181 NSSDLKTQCCKFSVNYLRSSVVTAQIQLLKKAGRPSERLVSHENCRFNAPREHECVHVHE 240
                                 TAQIQLLKKAGRPSERLVSHENCRF  PREHECVHVHE
Sbjct: 181 ----------------------TAQIQLLKKAGRPSERLVSHENCRFKTPREHECVHVHE 208

Query: 241 ITEASGTEEAEADADYDNALKEAIKGVQDAVTTIIEHMEEVRYEIAALEDK 292
           ITEASGTEEAEADA+YDNALKEAIKGVQ+AVTTI EHMEEVRYEIAALEDK
Sbjct: 241 ITEASGTEEAEADAEYDNALKEAIKGVQEAVTTINEHMEEVRYEIAALEDK 208

[Close]

BLAST of Clc05G24410 vs. ExPASy TrEMBL
Match: A0A0A0KUN3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G612270 PE=4 SV=1)

HSP 1 Score: 322.0 bits (824), Expect = 2.5e-84
Identity = 192/291 (65.98%), Postives = 198/291 (68.04%), Query Frame = 0


Query: 1   MEDFKKKLSLDEQMEEDQRTDTTDSSDSSNTLSLLRKFLEIQQRRAEAYAKLKRIRWLKL 60
           MEDF+KKLSLDEQMEED++T      DSSNTLSLLR+FLEIQQRRAEAY+KLK       
Sbjct: 1   MEDFEKKLSLDEQMEEDRKT------DSSNTLSLLRQFLEIQQRRAEAYSKLK------- 60

Query: 61  YSDGILLIRRGFDEYMTSGREISYQQLCSEITMEFSNCSKQVIDIESNFRSPDHNRLELA 120
                    RGFDEYMTSGREISYQQLCSEIT EFSNCSKQVIDIESNFRS DHNRLELA
Sbjct: 61  ---------RGFDEYMTSGREISYQQLCSEITTEFSNCSKQVIDIESNFRSSDHNRLELA 120

Query: 121 NLLRSVQEQEKQKLHLVYATSRKFSRKFWIYFVAASFPHLHRLSLESNYVKHHSKVEPLL 180
           N LRSVQEQEKQKLHL                                            
Sbjct: 121 NQLRSVQEQEKQKLHL-------------------------------------------- 180

Query: 181 NSSDLKTQCCKFSVNYLRSSVVTAQIQLLKKAGRPSERLVSHENCRFNAPREHECVHVHE 240
                                 TAQIQLLKKAGRPSERLVSHENCRFNAPREHECVHVHE
Sbjct: 181 ----------------------TAQIQLLKKAGRPSERLVSHENCRFNAPREHECVHVHE 203

Query: 241 ITEASGTEEAEADADYDNALKEAIKGVQDAVTTIIEHMEEVRYEIAALEDK 292
           ITEASGTEEAEADA+YDNALKEAIKGVQDAVTTI EHMEEVRYEI ALEDK
Sbjct: 241 ITEASGTEEAEADAEYDNALKEAIKGVQDAVTTINEHMEEVRYEIEALEDK 203

[Close]

BLAST of Clc05G24410 vs. ExPASy TrEMBL
Match: A0A5D3CFT2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G001610 PE=4 SV=1)

HSP 1 Score: 318.2 bits (814), Expect = 3.7e-83
Identity = 190/291 (65.29%), Postives = 197/291 (67.70%), Query Frame = 0


Query: 1   MEDFKKKLSLDEQMEEDQRTDTTDSSDSSNTLSLLRKFLEIQQRRAEAYAKLKRIRWLKL 60
           MEDF+KKLSLDEQMEED+ T      DSSNTLSLLR+FLEIQQRRAEAY+KLK       
Sbjct: 1   MEDFEKKLSLDEQMEEDRGT------DSSNTLSLLRQFLEIQQRRAEAYSKLK------- 60

Query: 61  YSDGILLIRRGFDEYMTSGREISYQQLCSEITMEFSNCSKQVIDIESNFRSPDHNRLELA 120
                    RGFDEYMTSGREISYQQLCSEIT EFSNCSKQVIDIESNFR+ DHNRLELA
Sbjct: 61  ---------RGFDEYMTSGREISYQQLCSEITTEFSNCSKQVIDIESNFRNSDHNRLELA 120

Query: 121 NLLRSVQEQEKQKLHLVYATSRKFSRKFWIYFVAASFPHLHRLSLESNYVKHHSKVEPLL 180
           NLLRSVQEQEKQKLHL                                            
Sbjct: 121 NLLRSVQEQEKQKLHL-------------------------------------------- 180

Query: 181 NSSDLKTQCCKFSVNYLRSSVVTAQIQLLKKAGRPSERLVSHENCRFNAPREHECVHVHE 240
                                 TAQIQLLKKAGRPSERLVSHENCR NAPREHECVHVHE
Sbjct: 181 ----------------------TAQIQLLKKAGRPSERLVSHENCRINAPREHECVHVHE 203

Query: 241 ITEASGTEEAEADADYDNALKEAIKGVQDAVTTIIEHMEEVRYEIAALEDK 292
           ITEASGTEEAEADA+YDNALKEAIKGVQDAVTTI +HMEEVRYEI ALEDK
Sbjct: 241 ITEASGTEEAEADAEYDNALKEAIKGVQDAVTTINDHMEEVRYEIEALEDK 203

[Close]

BLAST of Clc05G24410 vs. ExPASy TrEMBL
Match: A0A1S3BGI9 (uncharacterized protein LOC103489347 OS=Cucumis melo OX=3656 GN=LOC103489347 PE=4 SV=1)

HSP 1 Score: 318.2 bits (814), Expect = 3.7e-83
Identity = 190/291 (65.29%), Postives = 197/291 (67.70%), Query Frame = 0


Query: 1   MEDFKKKLSLDEQMEEDQRTDTTDSSDSSNTLSLLRKFLEIQQRRAEAYAKLKRIRWLKL 60
           MEDF+KKLSLDEQMEED+ T      DSSNTLSLLR+FLEIQQRRAEAY+KLK       
Sbjct: 1   MEDFEKKLSLDEQMEEDRGT------DSSNTLSLLRQFLEIQQRRAEAYSKLK------- 60

Query: 61  YSDGILLIRRGFDEYMTSGREISYQQLCSEITMEFSNCSKQVIDIESNFRSPDHNRLELA 120
                    RGFDEYMTSGREISYQQLCSEIT EFSNCSKQVIDIESNFR+ DHNRLELA
Sbjct: 61  ---------RGFDEYMTSGREISYQQLCSEITTEFSNCSKQVIDIESNFRNSDHNRLELA 120

Query: 121 NLLRSVQEQEKQKLHLVYATSRKFSRKFWIYFVAASFPHLHRLSLESNYVKHHSKVEPLL 180
           NLLRSVQEQEKQKLHL                                            
Sbjct: 121 NLLRSVQEQEKQKLHL-------------------------------------------- 180

Query: 181 NSSDLKTQCCKFSVNYLRSSVVTAQIQLLKKAGRPSERLVSHENCRFNAPREHECVHVHE 240
                                 TAQIQLLKKAGRPSERLVSHENCR NAPREHECVHVHE
Sbjct: 181 ----------------------TAQIQLLKKAGRPSERLVSHENCRINAPREHECVHVHE 203

Query: 241 ITEASGTEEAEADADYDNALKEAIKGVQDAVTTIIEHMEEVRYEIAALEDK 292
           ITEASGTEEAEADA+YDNALKEAIKGVQDAVTTI +HMEEVRYEI ALEDK
Sbjct: 241 ITEASGTEEAEADAEYDNALKEAIKGVQDAVTTINDHMEEVRYEIEALEDK 203

[Close]

BLAST of Clc05G24410 vs. ExPASy TrEMBL
Match: A0A6J1HYI6 (uncharacterized protein C19orf60 homolog OS=Cucurbita maxima OX=3661 GN=LOC111467775 PE=4 SV=1)

HSP 1 Score: 314.7 bits (805), Expect = 4.1e-82
Identity = 189/291 (64.95%), Postives = 197/291 (67.70%), Query Frame = 0


Query: 1   MEDFKKKLSLDEQMEEDQRTDTTDSSDSSNTLSLLRKFLEIQQRRAEAYAKLKRIRWLKL 60
           MEDF KKLSL EQMEED RT + DSS SSNTL+LLRKFLEIQQRRAEAYA+LK       
Sbjct: 1   MEDFDKKLSLAEQMEEDGRT-SGDSSGSSNTLTLLRKFLEIQQRRAEAYARLK------- 60

Query: 61  YSDGILLIRRGFDEYMTSGREISYQQLCSEITMEFSNCSKQVIDIESNFRSPDHNRLELA 120
                    RGFDEYMTSGREISYQQLC EIT EFSNCSKQVIDIESNF SPDH+R+ELA
Sbjct: 61  ---------RGFDEYMTSGREISYQQLCGEITAEFSNCSKQVIDIESNFCSPDHDRIELA 120

Query: 121 NLLRSVQEQEKQKLHLVYATSRKFSRKFWIYFVAASFPHLHRLSLESNYVKHHSKVEPLL 180
           +LLRSVQEQEKQKLHL                                            
Sbjct: 121 SLLRSVQEQEKQKLHL-------------------------------------------- 180

Query: 181 NSSDLKTQCCKFSVNYLRSSVVTAQIQLLKKAGRPSERLVSHENCRFNAPREHECVHVHE 240
                                 TAQIQLLKKAGRPSERLVSHENCRF  PREHECVHVHE
Sbjct: 181 ----------------------TAQIQLLKKAGRPSERLVSHENCRFKTPREHECVHVHE 208

Query: 241 ITEASGTEEAEADADYDNALKEAIKGVQDAVTTIIEHMEEVRYEIAALEDK 292
           ITEASGTEEAEADA+YDNALKEAIKGVQ+AVTTI EHMEEVRYEIAALEDK
Sbjct: 241 ITEASGTEEAEADAEYDNALKEAIKGVQEAVTTINEHMEEVRYEIAALEDK 208

[Close]

BLAST of Clc05G24410 vs. ExPASy TrEMBL
Match: A0A6J1G147 (uncharacterized protein C19orf60 homolog OS=Cucurbita moschata OX=3662 GN=LOC111449729 PE=4 SV=1)

HSP 1 Score: 314.7 bits (805), Expect = 4.1e-82
Identity = 189/291 (64.95%), Postives = 197/291 (67.70%), Query Frame = 0


Query: 1   MEDFKKKLSLDEQMEEDQRTDTTDSSDSSNTLSLLRKFLEIQQRRAEAYAKLKRIRWLKL 60
           MEDF KKLSL EQMEED RT + DSS SSNTL+LLRKFLEIQQRRAEAYA+LK       
Sbjct: 1   MEDFDKKLSLAEQMEEDGRT-SGDSSGSSNTLTLLRKFLEIQQRRAEAYARLK------- 60

Query: 61  YSDGILLIRRGFDEYMTSGREISYQQLCSEITMEFSNCSKQVIDIESNFRSPDHNRLELA 120
                    RGFDEYMTSGREISYQQLC EIT EFSNCSKQVIDIESNF SPDH+R+ELA
Sbjct: 61  ---------RGFDEYMTSGREISYQQLCGEITAEFSNCSKQVIDIESNFCSPDHDRIELA 120

Query: 121 NLLRSVQEQEKQKLHLVYATSRKFSRKFWIYFVAASFPHLHRLSLESNYVKHHSKVEPLL 180
           +LLRSVQEQEKQKLHL                                            
Sbjct: 121 SLLRSVQEQEKQKLHL-------------------------------------------- 180

Query: 181 NSSDLKTQCCKFSVNYLRSSVVTAQIQLLKKAGRPSERLVSHENCRFNAPREHECVHVHE 240
                                 TAQIQLLKKAGRPSERLVSHENCRF  PREHECVHVHE
Sbjct: 181 ----------------------TAQIQLLKKAGRPSERLVSHENCRFKTPREHECVHVHE 208

Query: 241 ITEASGTEEAEADADYDNALKEAIKGVQDAVTTIIEHMEEVRYEIAALEDK 292
           ITEASGTEEAEADA+YDNALKEAIKGVQ+AVTTI EHMEEVRYEIAALEDK
Sbjct: 241 ITEASGTEEAEADAEYDNALKEAIKGVQEAVTTINEHMEEVRYEIAALEDK 208

[Close]

BLAST of Clc05G24410 vs. TAIR 10
Match: AT5G04910.1 (unknown protein; Has 71 Blast hits to 71 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 17; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). )

HSP 1 Score: 210.7 bits (535), Expect = 1.6e-54
Identity = 134/299 (44.82%), Postives = 165/299 (55.18%), Query Frame = 0


Query: 2   EDFKKKLSLDEQMEED-----------QRTDTTDSSDSSNTLSLLRKFLEIQQRRAEAYA 61
           EDF+KK+SL + +  D             + T  S  +S TL LLR  LEIQQRRA+AYA
Sbjct: 4   EDFQKKVSLRDSLSGDIENECGGSGVGSTSSTVGSGVASQTLVLLRSLLEIQQRRAQAYA 63

Query: 62  KLKRIRWLKLYSDGILLIRRGFDEYMTSGREISYQQLCSEITMEFSNCSKQVIDIESNFR 121
            LK                 GF EY+ SG E  YQ+LCSEIT EFS CSKQV ++ES F 
Sbjct: 64  NLK----------------SGFSEYVESGAEALYQKLCSEITTEFSECSKQVREMESLFL 123

Query: 122 SPDHNRLELANLLRSVQEQEKQKLHLVYATSRKFSRKFWIYFVAASFPHLHRLSLESNYV 181
           +P+  R +LA LL  +Q QEKQKLHL                                  
Sbjct: 124 NPEVGRADLAKLLSDIQTQEKQKLHL---------------------------------- 183

Query: 182 KHHSKVEPLLNSSDLKTQCCKFSVNYLRSSVVTAQIQLLKKAGRPSERLVSHENCRFNAP 241
                                           T  IQ+LKKAGRPSER+++HENC+F  P
Sbjct: 184 --------------------------------TVTIQVLKKAGRPSERMLTHENCKFKKP 220

Query: 242 REHECVHVHEITEASGTEEAEADADYDNALKEAIKGVQDAVTTIIEHMEEVRYEIAALE 290
            +HECVH+HEITEA+GTEEAEADA++DNALKEAI+GVQDAVT+I E++E++RYEI ALE
Sbjct: 244 MQHECVHLHEITEAAGTEEAEADAEFDNALKEAIRGVQDAVTSINEYLEDIRYEIEALE 220

The following BLAST results are available for this feature:

BLAST of Clc05G24410 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004135056.1	5.2e-84	65.98	uncharacterized protein LOC101210078 [Cucumis sativus] >KGN52147.1 hypothetical ...	[more]
XP_038892275.1	1.5e-83	65.29	uncharacterized protein LOC120081463 [Benincasa hispida]	[more]
XP_008446706.1	7.6e-83	65.29	PREDICTED: uncharacterized protein LOC103489347 [Cucumis melo] >KAA0034618.1 unc...	[more]
XP_023541138.1	6.4e-82	64.95	uncharacterized protein C19orf60 homolog [Cucurbita pepo subsp. pepo]	[more]
XP_022945518.1	8.4e-82	64.95	uncharacterized protein C19orf60 homolog [Cucurbita moschata] >XP_022968603.1 un...	[more]

BLAST of Clc05G24410 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc05G24410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KUN3	2.5e-84	65.98	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G612270 PE=4 SV=1	[more]
A0A5D3CFT2	3.7e-83	65.29	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BGI9	3.7e-83	65.29	uncharacterized protein LOC103489347 OS=Cucumis melo OX=3656 GN=LOC103489347 PE=...	[more]
A0A6J1HYI6	4.1e-82	64.95	uncharacterized protein C19orf60 homolog OS=Cucurbita maxima OX=3661 GN=LOC11146...	[more]
A0A6J1G147	4.1e-82	64.95	uncharacterized protein C19orf60 homolog OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]

BLAST of Clc05G24410 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G04910.1	1.6e-54	44.82	unknown protein; Has 71 Blast hits to 71 proteins in 36 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR039491	Required for excision 1-B domain-containing protein	PFAM	PF14966	DNA_repr_REX1B	coord: 69..138 e-value: 1.7E-20 score: 73.4
IPR039491	Required for excision 1-B domain-containing protein	PANTHER	PTHR28309	REQUIRED FOR EXCISION 1-B DOMAIN-CONTAINING PROTEIN	coord: 25..289
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc05G24410.2	Clc05G24410.2	mRNA