Clc05G24080 (gene) Watermelon (cordophanus) v2

Overview
NameClc05G24080
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Descriptiontransformer-2 protein homolog alpha-like
LocationClcChr05: 32133646 .. 32136623 (+)
RNA-Seq ExpressionClc05G24080
SyntenyClc05G24080
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCCTACTTCAATTTTCCCCACCATTTTCTTTTTCTTTATATATAAAAACCCTGCATTAGTTCCACCAACAGACAGTGAAAAAGAAAAGGGGAGAAAAATGGGAAGAAGAAGAGAAATTGTATTGATTTTGATTATTGTTTATTCATCTATGGTGGCTTCCTTTGCTTTGAGACAACTCTTCTCAATAGGTCAATTCCTCTCCTTCTATCCTTTTTTTTTTTTTCCCTTCATTTTAAAATATTCATGTCGTTTAAATAGAATTATTGTTGGATTATATATTTTTTTATCTAGCAAGATCTTTGATTAAATTTTAAAATTAGTTTTTAATCTCCTTTTAATAATTATTTAATTTTTTATTTTTGAAAATTAATTAAGTTTATAAACATTATTTTTTTTTTTGTCATTTTCTAATCATGTTTAAAAAATTCATATCAATTTTGGGAAACTAAAGAAAATAAAAAATAAAAATTCTTTACCAAAAAAAAAAAAAAGCCTATTTAACCATTTGATTTTTGAAAGTTGTGTTTGTTTTCTTGCCATTTCTTAACTATGGTTCTCATCCTTCTTGAGTGTTTTTGGATTTTTAGCCAAATTGCAAAAATAAATCAAGTTCTTAAAATATAATAACTTTACTTTTCAATACTTAGTTGGGTTTTTGAAAACAATCCTAAGAAGTGACAACCAAACAAAGAGGCTGTCAATTGTAGATATAGGTATAAGTATAGGAGCTAAATAACGATCGTTGTTGTAGTGTGGAAGATCCATTGCCTTGAAAGCAAAATTTGGCACGACCTCCGTCTAATCGCCTATGTTGGTTGCTCCCCAAAGTTACTACAACCTCCCAACTCAAACATACACCACGTTGGAGAAGGAATGAAATCAATGAATAATATGCTCAGAAAACAAAGAAGAGAGAATCTATTTTCTCAATCATTTTTTTTAATAATTCAGAGCCTTTTTGAAAGGAAGAATAAAATCTATTTTTTAAAACAAAAAGAAAACTTTTTTGAAATAAATTTTAAAACGATTTTAGAACTAATTGAGATTGAATTAATTTCAAACAATTTTTTTGTTTTCTTTTCTTTTGGTATGTTTAGTCATTTCCAACAACAAGTAGTATTTAGAAGTTTAAAAAAATGATTTTCAAATGATACCTTAAAGTTTGTGTTTAATAAGTCTTTAAATAATATTTAATTGTATCTAATAAATTCATAAACTTGCTAAATTAAAAATATGTATGATATTTAAAAGCTTTGTGACACAACAAAGTCATAATAATATTTATACTTTATTTATTGTATTATATATACAGTCACATCAGTGAAATTTTATTAATACTCTTTTTATATTTCATTGAAGCTCCAAGTACTGCAATAGAATACAAAAAATATTGACTAAACCATGGTATATGTAGGTTTGATATATGTTAAAATATTATTTTGGTTATTCTATTTTAGATTTCATTTTATTTTAGACTCCGTTTGGTAACCATTCAGTTTTTTGTCTTTGTTTTTTAAAATTAAGCCTATTTCTTCTTCATTTCTTCATTGATTTGCATATCTCTTAAGTACAATAGTTTAATTTTTTGACAAATTCCAAAAACAAAAACAAGTTTTTAAAAACTATTTTTTTTTAATTTTCAAATTTTGGATTGGCTTTTTAAACTATTAGTAAAAAGTAGATAGCATAGGAATGAATTTGAAAGTAAAAGTAGTGTATATAGATTTAATTTTAGAAAACAAAAAAAATAGTTATAAAACGGAGTTCTAGTTCTCTTAATTTCATACACTCAATTTTTAGTTCAAGTATATTTTTAATAGATCTTAAATTTAGTTAATGTAGTAAGTTTCTTGATATATTTTTTTAAAAATAAATAGTCTTTATATTTTAGCAATCCCTTCATAAATTTAGAACATTTATCCACATGGTGTTTATTTATGCATTATATTATTATTATTTAACTGACTTTAATAAAAATTAACTTTGGATGGTTAGATTATTTATTGAAAAGTGTAAAGACAAAAAATTAGAGTTGTTTTTTTTTACAAAAATATAACTAAAATGAAACTAAACTTAGTATAAATATTAAAATCGATATTTTAAATAACAATTTTATTTTTAGTTTTCTCTTGATTAAAATCATGCTTATAAACCCTAATTCTACTCATTCATTTATGATTTTCTTGCTCTATAACTTAATTTTTTTAAAACATTGTAAAAAAAATTAAGCCAAATTTAGAAATTAAATTTTTGTTAAAAATTCAATCTGAGTACAATTTAAAATAATAAAATAAATAGCGAAAATCTAACAAAGAAAAGCTTGCTAAAAAAACAAATATAATTTTCATAAAAAAAAAAATAAAAAATAAAATGATTTTCAAACTAAATCTTAGTTAACTATTTCATACATATAAATATTGATATGAAAATTGAATGTGTGTGTGTATGTATATGTATTTTGTAGATTCCAAACACCAATTAATTGGTAGAAGATACAATAATATAAGTTCAACATTATTTGATGAACGTCGACGAGGAGGCAGGGGTGTGATCCCAGGATATGTAGCCGGTGCTTCTTCACGCCGTCATGGAAAGCACAAACACAACCTTGGAAACCGTCATAATAACTACATGGAGTTTATATTGATTGGAGTTTCCATCTCTATTACAATATTGTGTAGACTTATCTAGTACTAAACACATTTTAAAACATTGGTAAAGAGTGAGTAACAAATACTTTAACCTATTTAATCACGAATTACGCTAGACTCATTGTTGATGAAATTTAAATTTTATCATAAGCAATCACTTGTATATTTAAGATTTCCATATGCTTTTTAGAAGTTGCAATATATAATTGGAGTAGTTACAAATATAGCAATCATGATCAAAATATTTGCAGATATAACACATATATAATTGAAATTGTTGCAAATATAACAATCAGGTTCAAAATATTTGCAGATATAACATAATGC

mRNA sequence

TCCTACTTCAATTTTCCCCACCATTTTCTTTTTCTTTATATATAAAAACCCTGCATTAGTTCCACCAACAGACAGTGAAAAAGAAAAGGGGAGAAAAATGGGAAGAAGAAGAGAAATTGTATTGATTTTGATTATTGTTTATTCATCTATGGTGGCTTCCTTTGCTTTGAGACAACTCTTCTCAATAGATTCCAAACACCAATTAATTGGTAGAAGATACAATAATATAAGTTCAACATTATTTGATGAACGTCGACGAGGAGGCAGGGGTGTGATCCCAGGATATGTAGCCGGTGCTTCTTCACGCCGTCATGGAAAGCACAAACACAACCTTGGAAACCGTCATAATAACTACATGGAGTTTATATTGATTGGAGTTTCCATCTCTATTACAATATTGTGTAGACTTATCTAGTACTAAACACATTTTAAAACATTGGTAAAGAGTGAGTAACAAATACTTTAACCTATTTAATCACGAATTACGCTAGACTCATTGTTGATGAAATTTAAATTTTATCATAAGCAATCACTTGTATATTTAAGATTTCCATATGCTTTTTAGAAGTTGCAATATATAATTGGAGTAGTTACAAATATAGCAATCATGATCAAAATATTTGCAGATATAACACATATATAATTGAAATTGTTGCAAATATAACAATCAGGTTCAAAATATTTGCAGATATAACATAATGC

Coding sequence (CDS)

ATGGGAAGAAGAAGAGAAATTGTATTGATTTTGATTATTGTTTATTCATCTATGGTGGCTTCCTTTGCTTTGAGACAACTCTTCTCAATAGATTCCAAACACCAATTAATTGGTAGAAGATACAATAATATAAGTTCAACATTATTTGATGAACGTCGACGAGGAGGCAGGGGTGTGATCCCAGGATATGTAGCCGGTGCTTCTTCACGCCGTCATGGAAAGCACAAACACAACCTTGGAAACCGTCATAATAACTACATGGAGTTTATATTGATTGGAGTTTCCATCTCTATTACAATATTGTGTAGACTTATCTAG

Protein sequence

MGRRREIVLILIIVYSSMVASFALRQLFSIDSKHQLIGRRYNNISSTLFDERRRGGRGVIPGYVAGASSRRHGKHKHNLGNRHNNYMEFILIGVSISITILCRLI
Homology
[Close]
BLAST of Clc05G24080 vs. NCBI nr
Match: KGN52709.2 (hypothetical protein Csa_008507 [Cucumis sativus])

HSP 1 Score: 126.3 bits (316), Expect = 1.5e-25
Identity = 71/106 (66.98%), Postives = 83/106 (78.30%), Query Frame = 0 

Query: 1   MGRRR-EIVLILIIVYSSMVASFALRQLFSIDSKHQLIGRRYNNISSTLFDERRRGGRGV 60
           MGRRR E+  IL+I+ SSM+ASFA  QLF+IDSK  +  R +NN   + F ERR GGRGV
Sbjct: 1   MGRRRGEMAFILVILCSSMMASFAFTQLFTIDSKQHITVREHNN---SRFVERRGGGRGV 60

Query: 61  IPGYVAGASSRRHGKHKHNLGNRHNNYMEFILIGVSISITILCRLI 106
           IP YVAGASS RHGKH H+LGNR NNY+EFI+IGVSISI +LCR I
Sbjct: 61  IPIYVAGASSGRHGKHSHSLGNRPNNYIEFIIIGVSISIALLCRFI 103

[Close]
BLAST of Clc05G24080 vs. NCBI nr
Match: XP_008446753.1 (PREDICTED: transformer-2 protein homolog alpha-like [Cucumis melo])

HSP 1 Score: 58.5 bits (140), Expect = 3.9e-05
Identity = 55/124 (44.35%), Postives = 62/124 (50.00%), Query Frame = 0 

Query: 1   MGRRR---EIVLILIIVYSSMVASFALRQLFSIDS-KHQ------LIGRRY--------- 60
           MGRRR   EI LILI++YSSMV SFA +QLF  DS KHQ        GRRY         
Sbjct: 1   MGRRRRRTEIALILILIYSSMVHSFAFKQLFVTDSIKHQESEHMEKHGRRYNIEGRHGYT 60

Query: 61  NNISSTLFDERRRGGRGVIPGYVAGASSRRHGKHKHNLGNRHNNYMEFILIGVSISITIL 106
           N I        R GGRG       G   R  G     + +R  NYM+FI   VSIS+  L
Sbjct: 61  NGIPIHDITITRGGGRG------GGGGGRGGGNGAGGIHDR--NYMKFIAAAVSISVAYL 116

[Close]
BLAST of Clc05G24080 vs. ExPASy TrEMBL
Match: A0A0A0KTE6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G613615 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.4e-21
Identity = 60/88 (68.18%), Postives = 69/88 (78.41%), Query Frame = 0 

Query: 18  MVASFALRQLFSIDSKHQLIGRRYNNISSTLFDERRRGGRGVIPGYVAGASSRRHGKHKH 77
           M+ASFA  QLF+IDSK  +  R +NN   + F ERR GGRGVIP YVAGASS RHGKH H
Sbjct: 1   MMASFAFTQLFTIDSKQHITVREHNN---SRFVERRGGGRGVIPIYVAGASSGRHGKHSH 60

Query: 78  NLGNRHNNYMEFILIGVSISITILCRLI 106
           +LGNR NNY+EFI+IGVSISI +LCR I
Sbjct: 61  SLGNRPNNYIEFIIIGVSISIALLCRFI 85

[Close]
BLAST of Clc05G24080 vs. ExPASy TrEMBL
Match: A0A1S3BFU5 (transformer-2 protein homolog alpha-like OS=Cucumis melo OX=3656 GN=LOC103489385 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.9e-05
Identity = 55/124 (44.35%), Postives = 62/124 (50.00%), Query Frame = 0 

Query: 1   MGRRR---EIVLILIIVYSSMVASFALRQLFSIDS-KHQ------LIGRRY--------- 60
           MGRRR   EI LILI++YSSMV SFA +QLF  DS KHQ        GRRY         
Sbjct: 1   MGRRRRRTEIALILILIYSSMVHSFAFKQLFVTDSIKHQESEHMEKHGRRYNIEGRHGYT 60

Query: 61  NNISSTLFDERRRGGRGVIPGYVAGASSRRHGKHKHNLGNRHNNYMEFILIGVSISITIL 106
           N I        R GGRG       G   R  G     + +R  NYM+FI   VSIS+  L
Sbjct: 61  NGIPIHDITITRGGGRG------GGGGGRGGGNGAGGIHDR--NYMKFIAAAVSISVAYL 116

The following BLAST results are available for this feature:
BLAST of Clc05G24080 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN52709.21.5e-2566.98hypothetical protein Csa_008507 [Cucumis sativus][more]
XP_008446753.13.9e-0544.35PREDICTED: transformer-2 protein homolog alpha-like [Cucumis melo][more]
BLAST of Clc05G24080 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Clc05G24080 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KTE61.4e-2168.18Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G613615 PE=4 SV=1[more]
A0A1S3BFU51.9e-0544.35transformer-2 protein homolog alpha-like OS=Cucumis melo OX=3656 GN=LOC103489385... [more]
BLAST of Clc05G24080 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc05G24080.1Clc05G24080.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0036297 interstrand cross-link repair
cellular_component GO:0005634 nucleus
molecular_function GO:0008409 5'-3' exonuclease activity
molecular_function GO:0017108 5'-flap endonuclease activity
molecular_function GO:0070336 flap-structured DNA binding